BLASTX nr result
ID: Cnidium21_contig00017728
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00017728
(1656 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis... 56 2e-16
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 47 1e-15
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 65 3e-15
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 64 4e-15
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 64 2e-14
>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana]
Length = 1489
Score = 56.2 bits (134), Expect(4) = 2e-16
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = -3
Query: 352 GMQEILL*KGIRHETYCAYILLQNAKVERKHTHVLKAARTLIF*SDIDFNHWGKCV---I 182
G EI+ G+ H CAY QN+ VERKH H+L AR L+F S+I +W CV +
Sbjct: 708 GFTEIVKEHGMLHHFSCAYTPQQNSVVERKHQHILNVARALLFQSNIPMQYWSDCVTTAV 767
Query: 181 FLYHQQTSYL 152
FL ++ S L
Sbjct: 768 FLINRLPSPL 777
Score = 40.8 bits (94), Expect(4) = 2e-16
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Frame = -2
Query: 710 DDITWHLRLGHAPRFILKHIPFLNCTKFTRSFSTSVIFMPSLSDSHAKLPFELLHTDILG 531
D WH RLGH +L+ + L S PF+L+H DI G
Sbjct: 598 DGHLWHQRLGHPSSVVLQKLKRLAYISHNNLASN---------------PFDLVHLDIWG 642
Query: 530 PY-----EKYRYFLTLV---TQG*FVFISYKENLTP*ILSAFLNYVSNKFS 402
P+ E +RYFLT+V T+ +V++ + + F+ VS +F+
Sbjct: 643 PFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFN 693
Score = 29.3 bits (64), Expect(4) = 2e-16
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 168 NRLPISVLKFKTPYEVLCVEAPSFDELKVSDC 73
NRLP +L K+PYE++ + P + LK C
Sbjct: 771 NRLPSPLLNNKSPYELILNKQPDYSLLKNFGC 802
Score = 25.8 bits (55), Expect(4) = 2e-16
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 88 QGFRLLKLIDKSTFI*RDVIFNETIFP 8
+G+++L L S + R+V+F E +FP
Sbjct: 833 KGYKVLDLESHSVTVSRNVVFKEHVFP 859
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 47.0 bits (110), Expect(4) = 1e-15
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = -3
Query: 328 KGIRHETYCAYILLQNAKVERKHTHVLKAARTLIF*SDIDFNHWGKCVI 182
KGI C QN+ VERKH H+L AR+L F S I ++WG C++
Sbjct: 546 KGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCIL 594
Score = 39.7 bits (91), Expect(4) = 1e-15
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 24/130 (18%)
Frame = -2
Query: 722 SATVDDIT----WHLRLGHAPRFILKHIPFLNCTKFTRSFSTSVIF-----------MPS 588
S TV +T WH RLGH + K P + F + + + +P
Sbjct: 395 SITVASVTSHDLWHKRLGHPS--VQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKHLPF 452
Query: 587 LSDSH-AKLPFELLHTDILGPY-----EKYRYFLTLV---TQG*FVFISYKENLTP*ILS 435
+S ++ + PF+L+H D GP+ + YRYFLT+V ++ +V++ ++ ++
Sbjct: 453 VSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIP 512
Query: 434 AFLNYVSNKF 405
F+ V N+F
Sbjct: 513 TFVTMVENQF 522
Score = 36.2 bits (82), Expect(4) = 1e-15
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 168 NRLPISVLKFKTPYEVLCVEAPSFDELKVSDC 73
NRLP +L+ K P+EVL P++D +KV C
Sbjct: 601 NRLPAPILEDKCPFEVLTKTVPTYDHIKVFGC 632
Score = 26.6 bits (57), Expect(4) = 1e-15
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 88 QGFRLLKLIDKSTFI*RDVIFNETIFP 8
+G++LL L S + R V+F+E +FP
Sbjct: 663 KGYKLLDLETHSIIVSRHVVFHEELFP 689
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 64.7 bits (156), Expect(2) = 3e-15
Identities = 50/151 (33%), Positives = 64/151 (42%), Gaps = 37/151 (24%)
Frame = -3
Query: 349 MQEILL*KGIRHETYCAYILLQNAKVERKHTHVLKAARTLIF*SDIDFNHWGKCVI---- 182
M+E L KGI HET C QN +VERKH H+L AR L F S + WG+C++
Sbjct: 424 MREYFLHKGITHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAY 483
Query: 181 -----------------FLYHQQTSYLSFKV*DPL---------------RSSMC*STIF 98
LY +Y +V L RS C +
Sbjct: 484 LINRTPSMLLQGKSPYEMLYKTAPNYSHLRVFGSLCYAHNQNHKGDKFVARSRRCVFVGY 543
Query: 97 **AQ-GFRLLKLIDKSTFI*RDVIFNETIFP 8
Q G+RL L ++ F+ RDVIF ET FP
Sbjct: 544 PHGQKGWRLFDLEEQKFFVSRDVIFQETEFP 574
Score = 44.7 bits (104), Expect(2) = 3e-15
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Frame = -2
Query: 698 WHLRLGHA--------PRFIL---KHIPFLNCTKFTRSFSTSVIFMPSLSDSHAKLPFEL 552
WH RLGHA PR +L K I C R+ T F LSD+ + F+L
Sbjct: 292 WHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTF--PLSDNRSMDSFQL 349
Query: 551 LHTDILGPYEK-----YRYFLTLV---TQG*FVFISYKENLTP*ILSAFLNYVSNKF 405
+H D+ GPY RYFLT+V ++G +V++ ++ T L F+ V +F
Sbjct: 350 IHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQF 406
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 64.3 bits (155), Expect(2) = 4e-15
Identities = 50/151 (33%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Frame = -3
Query: 349 MQEILL*KGIRHETYCAYILLQNAKVERKHTHVLKAARTLIF*SDIDFNHWGKCVI---- 182
M+E L KGI HET C QN +VERKH H+L AR L F S + WG+C++
Sbjct: 648 MREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAY 707
Query: 181 -----------------FLYHQQTSYLSFKV*DPL---------------RSSMC*STIF 98
LY Y +V L RS C +
Sbjct: 708 LINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGY 767
Query: 97 **AQ-GFRLLKLIDKSTFI*RDVIFNETIFP 8
Q G+RL L ++ F+ RDVIF ET FP
Sbjct: 768 PHGQKGWRLFDLEEQKFFVSRDVIFQETEFP 798
Score = 44.7 bits (104), Expect(2) = 4e-15
Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Frame = -2
Query: 698 WHLRLGHA--------PRFIL---KHIPFLNCTKFTRSFSTSVIFMPSLSDSHAKLPFEL 552
WH RLGHA PR +L K I C R+ T F LSD+ + F+L
Sbjct: 516 WHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTF--PLSDNRSMDSFQL 573
Query: 551 LHTDILGPYEK-----YRYFLTLV---TQG*FVFISYKENLTP*ILSAFLNYVSNKF 405
+H D+ GPY RYFLT+V ++G +V++ ++ T L F+ V +F
Sbjct: 574 IHCDVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQF 630
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 64.3 bits (155), Expect(2) = 2e-14
Identities = 50/151 (33%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Frame = -3
Query: 349 MQEILL*KGIRHETYCAYILLQNAKVERKHTHVLKAARTLIF*SDIDFNHWGKCVI---- 182
M+E L KGI HET C QN +VERKH H+L AR L F S + WG+C++
Sbjct: 424 MREYFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAY 483
Query: 181 -----------------FLYHQQTSYLSFKV*DPL---------------RSSMC*STIF 98
LY Y +V L RS C +
Sbjct: 484 LINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGY 543
Query: 97 **AQ-GFRLLKLIDKSTFI*RDVIFNETIFP 8
Q G+RL L ++ F+ RDVIF ET FP
Sbjct: 544 PHGQKGWRLFDLEEQKFFVSRDVIFQETEFP 574
Score = 42.7 bits (99), Expect(2) = 2e-14
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Frame = -2
Query: 698 WHLRLGHA--------PRFIL---KHIPFLNCTKFTRSFSTSVIFMPSLSDSHAKLPFEL 552
WH RLGHA PR +L K I C R+ T F L D+ + F+L
Sbjct: 292 WHRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTF--PLRDNRSMDSFQL 349
Query: 551 LHTDILGPYEK-----YRYFLTLV---TQG*FVFISYKENLTP*ILSAFLNYVSNKF 405
+H D+ GPY RYFLT+V ++G +V++ ++ T L F+ V +F
Sbjct: 350 IHCDVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQF 406