BLASTX nr result

ID: Cnidium21_contig00017624 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00017624
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530136.1| 60S ribosomal protein L18a, plant, putative ...   102   4e-20
ref|XP_003543169.1| PREDICTED: 60S ribosomal protein L18a-1-like...    99   4e-19
ref|XP_003546755.1| PREDICTED: 60S ribosomal protein L18a-1-like...    96   4e-18
ref|XP_002298923.1| predicted protein [Populus trichocarpa] gi|1...    96   4e-18
gb|ADR71269.1| 60S ribosomal protein L18aA [Hevea brasiliensis]        92   4e-17

>ref|XP_002530136.1| 60S ribosomal protein L18a, plant, putative [Ricinus communis]
           gi|223530361|gb|EEF32252.1| 60S ribosomal protein L18a,
           plant, putative [Ricinus communis]
          Length = 166

 Score =  102 bits (253), Expect = 4e-20
 Identities = 50/79 (63%), Positives = 55/79 (69%), Gaps = 8/79 (10%)
 Frame = +2

Query: 158 QYHQQHDEEQ----PPLQYGTFQGVANYPQPQP----AMGFPHPVPPPEHSAQPHYYAHG 313
           QYH QH ++     PP QYGTFQGVANYP P P     +GFP PVPPP  S +P  Y HG
Sbjct: 20  QYHHQHPQQSQPPPPPPQYGTFQGVANYPPPHPPQHPVIGFPQPVPPPGAS-EPPAYPHG 78

Query: 314 YQAVPGYAVVEGRPIRERR 370
           YQ VPGYAV EGRP+RERR
Sbjct: 79  YQTVPGYAVAEGRPVRERR 97


>ref|XP_003543169.1| PREDICTED: 60S ribosomal protein L18a-1-like [Glycine max]
          Length = 160

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 51/78 (65%), Positives = 54/78 (69%), Gaps = 9/78 (11%)
 Frame = +2

Query: 164 HQQHDEEQPP----LQYGTFQGVANYP--QPQPAMGFPHPVPPP---EHSAQPHYYAHGY 316
           H  H   QP      QYGTFQGVANYP  QP PA+GFPHPVPPP   + SA P  Y  GY
Sbjct: 14  HHNHPPPQPQPFPAAQYGTFQGVANYPPPQPHPAIGFPHPVPPPGAVDSSAPPPPYYPGY 73

Query: 317 QAVPGYAVVEGRPIRERR 370
           QAVPGYAV EGRP+RERR
Sbjct: 74  QAVPGYAVAEGRPVRERR 91


>ref|XP_003546755.1| PREDICTED: 60S ribosomal protein L18a-1-like [Glycine max]
          Length = 161

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/66 (71%), Positives = 50/66 (75%), Gaps = 6/66 (9%)
 Frame = +2

Query: 188 PPLQYGTFQGVANYP---QPQPAMGFPHPVPPP---EHSAQPHYYAHGYQAVPGYAVVEG 349
           P  QYGTFQGVANYP   QP PA+GFPHPVPPP   + SA P  Y  GYQAVPGYAV EG
Sbjct: 26  PAAQYGTFQGVANYPPPPQPHPAIGFPHPVPPPGAADSSAPPPPYYPGYQAVPGYAVAEG 85

Query: 350 RPIRER 367
           RP+RER
Sbjct: 86  RPVRER 91


>ref|XP_002298923.1| predicted protein [Populus trichocarpa] gi|118486768|gb|ABK95219.1|
           unknown [Populus trichocarpa]
           gi|222846181|gb|EEE83728.1| predicted protein [Populus
           trichocarpa]
          Length = 156

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/89 (52%), Positives = 60/89 (67%), Gaps = 7/89 (7%)
 Frame = +2

Query: 125 LKKMSEEKGVGQYHQQHDEEQPPL-----QYGTFQGVANYPQPQPA--MGFPHPVPPPEH 283
           +    + +GV   H+ H+++ PP      QYGTFQGVANYP P  +  +GFP PVPPP  
Sbjct: 1   MSDQEKNRGVVVDHRHHEDQPPPPPPPQPQYGTFQGVANYPPPSQSHVIGFPQPVPPPGI 60

Query: 284 SAQPHYYAHGYQAVPGYAVVEGRPIRERR 370
           +A+P  YA GYQ VPGYAV EGRP+R+RR
Sbjct: 61  TAEP--YAQGYQTVPGYAVAEGRPVRQRR 87


>gb|ADR71269.1| 60S ribosomal protein L18aA [Hevea brasiliensis]
          Length = 151

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 47/75 (62%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
 Frame = +2

Query: 164 HQQHDEEQPPLQYGTFQGVANYPQP--QPAMGFPHPVPPP----EHSAQPHYYAHGYQAV 325
           HQ H       QYGTFQGVANYP P  QP +GFP PVPPP      S  P YYA+ YQ V
Sbjct: 16  HQHH-------QYGTFQGVANYPPPHHQPVIGFPQPVPPPGATEPSSPLPPYYAYAYQTV 68

Query: 326 PGYAVVEGRPIRERR 370
           PGYAV EGRP+RERR
Sbjct: 69  PGYAVAEGRPVRERR 83


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