BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00017570
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD20832.1| sigma factor [Spinacia oleracea]                       62   4e-08
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...    58   9e-07
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...    58   9e-07
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]    58   9e-07
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...    57   2e-06

>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 26/43 (60%), Positives = 35/43 (81%)
 Frame = +1

Query: 1   HCMSLQEIGRLYSVSKEWIRKIERTALTKLRDQETLHSLNHYL 129
           HCMSL E+G+++ VSKEWIRK+E+ ALTKLR ++   +L HYL
Sbjct: 504 HCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYL 546


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 24/40 (60%), Positives = 35/40 (87%)
 Frame = +1

Query: 10  SLQEIGRLYSVSKEWIRKIERTALTKLRDQETLHSLNHYL 129
           SL+EIG+L  +SKEW+RKIE+ A+TKL+++ET+  L+HYL
Sbjct: 519 SLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL 558


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 10  SLQEIGRLYSVSKEWIRKIERTALTKLRDQETLHSLNHYL 129
           SL+EIGR ++VSKEWIRK+E+TAL  LRD+E   +L HY+
Sbjct: 520 SLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 559


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 10  SLQEIGRLYSVSKEWIRKIERTALTKLRDQETLHSLNHYL 129
           SL+EIGR ++VSKEWIRK+E+TAL  LRD+E   +L HY+
Sbjct: 570 SLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYV 609


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = +1

Query: 10  SLQEIGRLYSVSKEWIRKIERTALTKLRDQETLHSLNHYL 129
           SL+EIG+L+ VSKEWIRKIER A+ KLRDQ     L +YL
Sbjct: 530 SLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569