BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00017097
         (268 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit fa...    66   3e-09
ref|XP_004224224.1| DNA-directed RNA polymerase III subunit [Pla...    65   4e-09
ref|XP_002286749.1| DNA directed RNA polymerase III, second larg...    65   4e-09
gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Myc...    65   6e-09
emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD...    65   6e-09

>ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
           [Cryptosporidium muris RN66] gi|209555355|gb|EEA05400.1|
           DNA-directed RNA polymerase, beta subunit family protein
           [Cryptosporidium muris RN66]
          Length = 1219

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 29/69 (42%), Positives = 50/69 (72%)
 Frame = +3

Query: 48  QIGDPSEITNSFMSEEITPMKCRLSGSTYTIPVYVDIEYVKPGGNVDLRKNQMIGKIPIM 227
           ++G P ++  + ++ ++TPM CR+   TY  P+YVD++YV+ G NV  +KN  IG+IP+M
Sbjct: 100 RVGMP-KLEENMVTIDLTPMMCRMRDITYAAPIYVDVDYVR-GNNVVRKKNVEIGRIPVM 157

Query: 228 LKSRACLLH 254
           L+S+ C+L+
Sbjct: 158 LRSKVCILY 166


>ref|XP_004224224.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi
           strain B] gi|389585547|dbj|GAB68277.1| DNA-directed RNA
           polymerase III subunit [Plasmodium cynomolgi strain B]
          Length = 1300

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 31/71 (43%), Positives = 45/71 (63%)
 Frame = +3

Query: 54  GDPSEITNSFMSEEITPMKCRLSGSTYTIPVYVDIEYVKPGGNVDLRKNQMIGKIPIMLK 233
           G PS +  + +   +TP  CR    TY+ P+YVD+EYVK G N+  + N  IG++P+ML+
Sbjct: 167 GRPS-VEENMIETSLTPQICRQRDLTYSAPIYVDVEYVK-GSNIIRKNNVEIGRLPVMLR 224

Query: 234 SRACLLHNLKE 266
           S  C+LHN  E
Sbjct: 225 SDICILHNKSE 235


>ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
           gi|220978064|gb|EED96390.1| DNA directed RNA polymerase
           III, second largest subunit [Thalassiosira pseudonana
           CCMP1335]
          Length = 1108

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/72 (40%), Positives = 48/72 (66%)
 Frame = +3

Query: 51  IGDPSEITNSFMSEEITPMKCRLSGSTYTIPVYVDIEYVKPGGNVDLRKNQMIGKIPIML 230
           +G+PS   +S+ + + TP +CRL   TY+ P+YV++ Y + G  + ++K  MIG++PIML
Sbjct: 45  VGEPSIDEDSYATTQATPFQCRLRDCTYSAPIYVNVRYTR-GRQIVVKKKVMIGRMPIML 103

Query: 231 KSRACLLHNLKE 266
           +S  CLL +  E
Sbjct: 104 RSSKCLLRDKSE 115


>gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
           populorum SO2202]
          Length = 1204

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
 Frame = +3

Query: 48  QIGDPSEITNS---FMSEEITPMKCRLSGSTYTIPVYVDIEYVKPGGNVDLRKNQMIGKI 218
           +IG PS I ++   ++  E+TP +CRL   TY+ P+YVD  Y +  GNV  + + +IG++
Sbjct: 151 RIGKPSRIEDARAGYVQTEVTPNECRLRDMTYSAPIYVDFVYPRQSGNV-RKTDVLIGRV 209

Query: 219 PIMLKSRACLLHNLKE 266
           P+ML+S  C+LH   E
Sbjct: 210 PMMLRSSKCVLHGRSE 225


>emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
           hordei]
          Length = 1169

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 30/72 (41%), Positives = 44/72 (61%)
 Frame = +3

Query: 51  IGDPSEITNSFMSEEITPMKCRLSGSTYTIPVYVDIEYVKPGGNVDLRKNQMIGKIPIML 230
           +G+P       +   ITP +CRL   TY+  ++V+IEY + GG +  RKN  IG+IP+ML
Sbjct: 105 VGEPRRYDGDALQRPITPQECRLRDITYSAHIFVNIEYTR-GGKIIRRKNVAIGRIPVML 163

Query: 231 KSRACLLHNLKE 266
           +S  C+L N  E
Sbjct: 164 RSNKCVLSNKSE 175