BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00017084
         (679 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX92783.1| retrotransposon protein, putative, Ty3-gypsy sub-...    65   2e-08
gb|AAM00949.1|AC021892_13 Putative retroelement [Oryza sativa Ja...    61   2e-07
gb|AAN04936.1| Putative retroelement [Oryza sativa Japonica Group]     61   2e-07
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                60   3e-07
gb|ABA98116.1| retrotransposon protein, putative, Ty3-gypsy subc...    60   4e-07

>gb|AAX92783.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550530|gb|ABA93327.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1288

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 39/162 (24%), Positives = 76/162 (46%)
 Frame = -2

Query: 672 MRLVGHDETTICQMFEVYLKDSAQGWYRTLLLNSIDSYDQLRTKFLKHFDYN*RTIRITA 493
           +R  G D   +     V L DSA+ W   L   +I S+ +LR  F+ +F           
Sbjct: 325 IRAAGGDSKAMANYLPVALVDSARSWLHGLPRGTIGSWAELRDHFIANFQSTFERPGAQF 384

Query: 492 SLVNIREKGKKSMAKYMKHFKQECEKVSSLNDSQAMGFFYGGLDGKQSCKLLSSFYKFPP 313
            L N+ +K  +S+  Y++ F ++C K+S ++D   +  F  G+  +    L+  F + PP
Sbjct: 385 DLYNVIQKSGESLRDYIRRFSEQCNKISDISDDVIIAAFTKGIRHED---LVGKFGRKPP 441

Query: 312 *SLNDMYSRAENISAKKRKLLTHLTKVIIEA*RQFTREEEGL 187
            ++  M+ +A ++   K  L    ++  + + R+  R + G+
Sbjct: 442 KTVKQMFKKATSMPKPKMSLPRPSSRAPLRSRRKIRRLQGGV 483


>gb|AAM00949.1|AC021892_13 Putative retroelement [Oryza sativa Japonica Group]
           gi|31431082|gb|AAP52913.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1945

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 36/148 (24%), Positives = 71/148 (47%)
 Frame = -2

Query: 672 MRLVGHDETTICQMFEVYLKDSAQGWYRTLLLNSIDSYDQLRTKFLKHFDYN*RTIRITA 493
           +R  G D   +     V L DSA+ W   L   +I S+ +LR  F+ +F           
Sbjct: 459 IRAAGGDSKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQY 518

Query: 492 SLVNIREKGKKSMAKYMKHFKQECEKVSSLNDSQAMGFFYGGLDGKQSCKLLSSFYKFPP 313
            L N+ +K  +S+  Y++ F ++  K+S + D   +  F  G+  ++   L+  F + PP
Sbjct: 519 DLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEE---LVGKFGRKPP 575

Query: 312 *SLNDMYSRAENISAKKRKLLTHLTKVI 229
            ++  M+ +A + S+++R  +    K++
Sbjct: 576 RTVKLMFEKANDHSSRQRSRVNTFDKIM 603


>gb|AAN04936.1| Putative retroelement [Oryza sativa Japonica Group]
          Length = 1479

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 36/148 (24%), Positives = 71/148 (47%)
 Frame = -2

Query: 672 MRLVGHDETTICQMFEVYLKDSAQGWYRTLLLNSIDSYDQLRTKFLKHFDYN*RTIRITA 493
           +R  G D   +     V L DSA+ W   L   +I S+ +LR  F+ +F           
Sbjct: 459 IRAAGGDSKAMANYLPVALADSARSWLHGLPRGTIGSWAELRDHFIANFQGTFERPGTQY 518

Query: 492 SLVNIREKGKKSMAKYMKHFKQECEKVSSLNDSQAMGFFYGGLDGKQSCKLLSSFYKFPP 313
            L N+ +K  +S+  Y++ F ++  K+S + D   +  F  G+  ++   L+  F + PP
Sbjct: 519 DLYNVIQKSGESLRDYIRRFSEQRNKISDITDDVIIAAFTKGIRHEE---LVGKFGRKPP 575

Query: 312 *SLNDMYSRAENISAKKRKLLTHLTKVI 229
            ++  M+ +A + S+++R  +    K++
Sbjct: 576 RTVKLMFEKANDHSSRQRSRVNTFDKIM 603


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 36/131 (27%), Positives = 64/131 (48%)
 Frame = -2

Query: 675 QMRLVGHDETTICQMFEVYLKDSAQGWYRTLLLNSIDSYDQLRTKFLKHFDYN*RTIRIT 496
           QM L   D T  C++F   L++   GW+  L  NSI S+D L  KF   +  +      +
Sbjct: 249 QMTLYTTDRTVWCKVFPTSLREGPLGWFSDLPPNSIASFDALELKFTTQYATSRPHRTSS 308

Query: 495 ASLVNIREKGKKSMAKYMKHFKQECEKVSSLNDSQAMGFFYGGLDGKQSCKLLSSFYKFP 316
            SL+N++++  +S+  +M  F + C  + +LN   AM      +      +   S  K P
Sbjct: 309 MSLLNVKQERGESLRTFMNRFSKVCMNIRNLNPEIAMHHLVSAI---LPGRFTESLIKRP 365

Query: 315 P*SLNDMYSRA 283
           P +++++ +RA
Sbjct: 366 PCNMDELRTRA 376


>gb|ABA98116.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 640

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 40/142 (28%), Positives = 66/142 (46%)
 Frame = -2

Query: 672 MRLVGHDETTICQMFEVYLKDSAQGWYRTLLLNSIDSYDQLRTKFLKHFDYN*RTIRITA 493
           +R  G D   +     V L DSA+ W   L   +I S+ +LR  F+ +F           
Sbjct: 350 IRAAGGDSKAMVNYLPVALADSARSWLHGLPRGTIGSWTELRDHFIANFQGTFERPGTHF 409

Query: 492 SLVNIREKGKKSMAKYMKHFKQECEKVSSLNDSQAMGFFYGGLDGKQSCKLLSSFYKFPP 313
            L NI +K  +S+  Y++HF +E  K+S + D   +  F  G+  +    L+  F + PP
Sbjct: 410 DLYNIIQKSGESLRDYIRHFSKERNKISDITDDVIIAAFTKGIRHED---LVGKFGRKPP 466

Query: 312 *SLNDMYSRAENISAKKRKLLT 247
            ++  M+ +A N  AK    +T
Sbjct: 467 KTVKQMFEKA-NEYAKAEDAIT 487