BLASTX nr result

ID: Cnidium21_contig00016639 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00016639
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|2...   294   6e-78
ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|2...   294   6e-78
ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonu...   293   1e-77
ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex s...   293   1e-77
ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...   293   1e-77

>ref|XP_002323264.1| predicted protein [Populus trichocarpa] gi|222867894|gb|EEF05025.1|
           predicted protein [Populus trichocarpa]
          Length = 482

 Score =  294 bits (752), Expect = 6e-78
 Identities = 143/157 (91%), Positives = 153/157 (97%)
 Frame = -1

Query: 473 IVCIDRATRLVKSQQGAGKEYVCIARLHSGVSDVAKVARALESLTGAVFQRPPLISAVKR 294
           IVCIDRATRLVKSQQGAGKEYVCIARLH  ++DV KVARALE+LTGAVFQRPPLISAVKR
Sbjct: 120 IVCIDRATRLVKSQQGAGKEYVCIARLHDKIADVTKVARALETLTGAVFQRPPLISAVKR 179

Query: 293 QLRIRTIYESKMLEFDAEKNLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 114
           QLRIRTIYESK+LE+DA+K+LVVFWISCEAGTYVRTMCVHLGLILGVG HMQELRRVRSG
Sbjct: 180 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGHMQELRRVRSG 239

Query: 113 IMGEKDNMVTMHDVMDAQWVFDNFRDESYLRRVIMPL 3
           I+GEKDNMVTMHDVMDAQWV+DN+RDESYLRRVIMPL
Sbjct: 240 ILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPL 276


>ref|XP_002308911.1| predicted protein [Populus trichocarpa] gi|222854887|gb|EEE92434.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score =  294 bits (752), Expect = 6e-78
 Identities = 144/157 (91%), Positives = 153/157 (97%)
 Frame = -1

Query: 473 IVCIDRATRLVKSQQGAGKEYVCIARLHSGVSDVAKVARALESLTGAVFQRPPLISAVKR 294
           IVCIDRATRLVKSQQGAGKEYVCIARLH  V DVAKVARALE+LTGAVFQRPPLISAVKR
Sbjct: 132 IVCIDRATRLVKSQQGAGKEYVCIARLHDKVPDVAKVARALETLTGAVFQRPPLISAVKR 191

Query: 293 QLRIRTIYESKMLEFDAEKNLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 114
           QLRIRTIYESK+LE+DA+++LVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG
Sbjct: 192 QLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 251

Query: 113 IMGEKDNMVTMHDVMDAQWVFDNFRDESYLRRVIMPL 3
           I+GEKDNMVTMHDVMDAQWV+DN+RDESYLRR IMPL
Sbjct: 252 ILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRAIMPL 288


>ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
           subunit 4-like [Cucumis sativus]
          Length = 566

 Score =  293 bits (749), Expect = 1e-77
 Identities = 142/157 (90%), Positives = 153/157 (97%)
 Frame = -1

Query: 473 IVCIDRATRLVKSQQGAGKEYVCIARLHSGVSDVAKVARALESLTGAVFQRPPLISAVKR 294
           IVCIDRATRLVKSQQGAGKEYVC+ARLHS V DV+KVARALE+LTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 293 QLRIRTIYESKMLEFDAEKNLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 114
           QLRIRTIYESK+LE+DA+K+LVVFWISCEAGTYVRT+CVHLGLILGVG HMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 113 IMGEKDNMVTMHDVMDAQWVFDNFRDESYLRRVIMPL 3
           I+GEKDNMVTMHDVMDAQW +DNF+DESYLRRVIMPL
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPL 277


>ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
           [Cucumis sativus]
          Length = 564

 Score =  293 bits (749), Expect = 1e-77
 Identities = 142/157 (90%), Positives = 153/157 (97%)
 Frame = -1

Query: 473 IVCIDRATRLVKSQQGAGKEYVCIARLHSGVSDVAKVARALESLTGAVFQRPPLISAVKR 294
           IVCIDRATRLVKSQQGAGKEYVC+ARLHS V DV+KVARALE+LTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 293 QLRIRTIYESKMLEFDAEKNLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 114
           QLRIRTIYESK+LE+DA+K+LVVFWISCEAGTYVRT+CVHLGLILGVG HMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 113 IMGEKDNMVTMHDVMDAQWVFDNFRDESYLRRVIMPL 3
           I+GEKDNMVTMHDVMDAQW +DNF+DESYLRRVIMPL
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPL 277


>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
           vinifera]
          Length = 586

 Score =  293 bits (749), Expect = 1e-77
 Identities = 142/157 (90%), Positives = 153/157 (97%)
 Frame = -1

Query: 473 IVCIDRATRLVKSQQGAGKEYVCIARLHSGVSDVAKVARALESLTGAVFQRPPLISAVKR 294
           IVCIDRATRLVKSQQGAGKEYVC+ARLHS V DVAKVARALE+LTGAVFQRPPLISAVKR
Sbjct: 136 IVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKR 195

Query: 293 QLRIRTIYESKMLEFDAEKNLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSG 114
           QLRIRTIYESK+LE+D +++LVVFWISCEAGTYVRT+CVHLGLILGVG HMQELRRVRSG
Sbjct: 196 QLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 255

Query: 113 IMGEKDNMVTMHDVMDAQWVFDNFRDESYLRRVIMPL 3
           I+GEKDNMVTMHDVMDAQWV+DN+RDESYLRRVIMPL
Sbjct: 256 ILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPL 292


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