BLASTX nr result
ID: Cnidium21_contig00016627
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00016627
(914 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,... 333 3e-89
ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi... 323 3e-86
emb|CBI25851.3| unnamed protein product [Vitis vinifera] 323 3e-86
ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2... 317 2e-84
gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsu... 284 2e-74
>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 518
Score = 333 bits (854), Expect = 3e-89
Identities = 163/272 (59%), Positives = 206/272 (75%)
Frame = -2
Query: 913 LFCDKGDMDEAGRLMREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHGCLP 734
LFCDKGDMD A +LM EMS LYPDM+TYV++ KGF + RLEEAC L + MR HGC+P
Sbjct: 172 LFCDKGDMDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVP 231
Query: 733 NRVMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALG 554
N V+YSTL+DG+CRFG +E+AL+LLG MEKEGG+ PNV+TYTSVIQ CE G++++A
Sbjct: 232 NVVVYSTLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFA 291
Query: 553 ILDRMVVNGSAPNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLM 374
+LDRM G APNRVT STL+ LC++G + E YKLIDRVV G VSS +CYS +VV L+
Sbjct: 292 VLDRMEACGCAPNRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSPIVVCLI 351
Query: 373 RIEKFPEAEKVFRSMLATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGCRLTID 194
RI+K EAEK+FR + + V PD LA SL+IK+LC ++LDGY L+ EIEK+G TID
Sbjct: 352 RIKKVEEAEKLFRRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKIGSLSTID 411
Query: 193 SDIYSILLAGLCQDGHLLESANLVGVMVEKDV 98
SD YS+LL GLCQ G+ LE+A L ++EK +
Sbjct: 412 SDTYSVLLVGLCQQGYSLEAAKLARSLIEKRI 443
Score = 89.7 bits (221), Expect = 8e-16
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 3/233 (1%)
Frame = -2
Query: 799 EGDRLEEACGLFRVMRDHGCLPNRVMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPN 620
EG EA + R M++ + Y+ ++ C GD++ A +L+GEM + P+
Sbjct: 140 EGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQKLMGEM--SFNDLYPD 197
Query: 619 VITYTSVIQSYCENGKSVEALGILDRMVVNGSAPNRVTASTLINGLCLEGRVNEVYKLID 440
++TY S+I+ +C+ G+ EA ++ M +G PN V STL++G+C G V +L+
Sbjct: 198 MVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGICRFGSVERALELLG 257
Query: 439 RVVGEGFVSSTECYSALVVSLMRIEKFPEAEKVFRSMLATSVHPDSLASSLLIKKLCSRG 260
+ EG +C +P+ L + +I+ LC +G
Sbjct: 258 GMEKEG----GDC-----------------------------NPNVLTYTSVIQGLCEKG 284
Query: 259 KILDGYHLYIEIEKLGC---RLTIDSDIYSILLAGLCQDGHLLESANLVGVMV 110
+ +D + + +E GC R+T+ S LL LC DGHL E+ L+ +V
Sbjct: 285 RTMDAFAVLDRMEACGCAPNRVTV-----STLLKRLCMDGHLEEAYKLIDRVV 332
>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
[Vitis vinifera]
Length = 638
Score = 323 bits (828), Expect = 3e-86
Identities = 165/287 (57%), Positives = 204/287 (71%), Gaps = 7/287 (2%)
Frame = -2
Query: 913 LFCDKGDMDEAGRLMREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHGCLP 734
LFC+KGDMD A LM+EM ++ LYP+MITYV M KGF RLE+AC LF+VM+ HGC P
Sbjct: 169 LFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSP 228
Query: 733 NRVMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALG 554
N V+Y+ +LDGVCRFG LE+AL+LLGEMEKE G+ PNV+TYTS+IQS CE GK +EAL
Sbjct: 229 NVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALE 288
Query: 553 ILDRMVVNGSAPNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLM 374
ILDRM G APNRVT S L+ G C EGRV E +KLID+VV G VS ECYS+L+VSL+
Sbjct: 289 ILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLV 348
Query: 373 RIEKFPEAEKVFRSMLATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGCRLTID 194
+ EAEK+FR MLA +V PD LA LIK LC G++LDG+HL+ E E + +D
Sbjct: 349 GNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLD 408
Query: 193 SDIYSILLAGLCQDGHLLESANLVGVMVEKDV-------DSLTEERK 74
SDIYSILL GL Q H +E+ L +MV++ + DS+ E K
Sbjct: 409 SDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLK 455
Score = 75.1 bits (183), Expect = 2e-11
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 5/195 (2%)
Frame = -2
Query: 679 EKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALGILDRMVVNGSAPNRVTAS 500
++AL +L +M + + + + Y SVI+ +CE G A G++ M + PN +T
Sbjct: 142 DEALWILKKMAEFN--IRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYV 199
Query: 499 TLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRIEKFPEAEKVFRSMLAT 320
T+I G C GR+ + KL + G G + Y+ ++ + R A ++ M
Sbjct: 200 TMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKE 259
Query: 319 S--VHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGC---RLTIDSDIYSILLAGLCQ 155
S P+ + + +I+ C +GK+++ + + GC R+T+ SIL+ G C
Sbjct: 260 SGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTV-----SILMKGFCA 314
Query: 154 DGHLLESANLVGVMV 110
+G + E+ L+ +V
Sbjct: 315 EGRVEEAFKLIDKVV 329
>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 323 bits (828), Expect = 3e-86
Identities = 165/287 (57%), Positives = 204/287 (71%), Gaps = 7/287 (2%)
Frame = -2
Query: 913 LFCDKGDMDEAGRLMREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHGCLP 734
LFC+KGDMD A LM+EM ++ LYP+MITYV M KGF RLE+AC LF+VM+ HGC P
Sbjct: 175 LFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSP 234
Query: 733 NRVMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALG 554
N V+Y+ +LDGVCRFG LE+AL+LLGEMEKE G+ PNV+TYTS+IQS CE GK +EAL
Sbjct: 235 NVVVYTVILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALE 294
Query: 553 ILDRMVVNGSAPNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLM 374
ILDRM G APNRVT S L+ G C EGRV E +KLID+VV G VS ECYS+L+VSL+
Sbjct: 295 ILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLV 354
Query: 373 RIEKFPEAEKVFRSMLATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGCRLTID 194
+ EAEK+FR MLA +V PD LA LIK LC G++LDG+HL+ E E + +D
Sbjct: 355 GNKNLQEAEKLFRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLD 414
Query: 193 SDIYSILLAGLCQDGHLLESANLVGVMVEKDV-------DSLTEERK 74
SDIYSILL GL Q H +E+ L +MV++ + DS+ E K
Sbjct: 415 SDIYSILLVGLSQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLK 461
Score = 75.1 bits (183), Expect = 2e-11
Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 5/195 (2%)
Frame = -2
Query: 679 EKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALGILDRMVVNGSAPNRVTAS 500
++AL +L +M + + + + Y SVI+ +CE G A G++ M + PN +T
Sbjct: 148 DEALWILKKMAEFN--IRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLYPNMITYV 205
Query: 499 TLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRIEKFPEAEKVFRSMLAT 320
T+I G C GR+ + KL + G G + Y+ ++ + R A ++ M
Sbjct: 206 TMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKE 265
Query: 319 S--VHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGC---RLTIDSDIYSILLAGLCQ 155
S P+ + + +I+ C +GK+++ + + GC R+T+ SIL+ G C
Sbjct: 266 SGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTV-----SILMKGFCA 320
Query: 154 DGHLLESANLVGVMV 110
+G + E+ L+ +V
Sbjct: 321 EGRVEEAFKLIDKVV 335
>ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 317 bits (813), Expect = 2e-84
Identities = 156/270 (57%), Positives = 201/270 (74%)
Frame = -2
Query: 907 CDKGDMDEAGRLMREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHGCLPNR 728
C+KGD+D A +LM EM ++ LYPDMITYV+M KGF + RLEEA LF VM HGC PN
Sbjct: 176 CEKGDVDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNV 235
Query: 727 VMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALGIL 548
V YS LLDG+CRFG +E+A +LL EMEK+G PNVITYTSVIQS+CE G++ +AL +L
Sbjct: 236 VAYSALLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVL 295
Query: 547 DRMVVNGSAPNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRI 368
+ M V G APNRVTAS ING+C G++ +VY I+R+V G VS +CYS+LVV L++I
Sbjct: 296 ELMEVRGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKI 355
Query: 367 EKFPEAEKVFRSMLATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGCRLTIDSD 188
+K EAEK FR L++ + PDSLA S++I+++CS ++LDG+ LY E+EK GC +ID D
Sbjct: 356 KKVEEAEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDID 415
Query: 187 IYSILLAGLCQDGHLLESANLVGVMVEKDV 98
IYSILLAGLCQ GH E+A L M+EK +
Sbjct: 416 IYSILLAGLCQQGHSAEAARLARSMLEKRI 445
Score = 60.5 bits (145), Expect = 5e-07
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 6/199 (3%)
Frame = -2
Query: 700 VCRFGDL-EKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALGILDRMVVNGS 524
+C+ G L ++AL +L +M + +P+ Y VI+S CE G A ++ M +
Sbjct: 139 LCKAGGLADEALMVLKKMPEFN--IRPDTTAYNVVIRSLCEKGDVDMAKKLMGEMGLIDL 196
Query: 523 APNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRIEKFPEAEK 344
P+ +T ++I G C GR+ E + L + G + YSAL+ + R A +
Sbjct: 197 YPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDGICRFGIVERAFE 256
Query: 343 VFRSM--LATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGC---RLTIDSDIYS 179
+ M P+ + + +I+ C +G+ D + +E GC R+T S
Sbjct: 257 LLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEVRGCAPNRVTA-----S 311
Query: 178 ILLAGLCQDGHLLESANLV 122
+ G+C +G L + N +
Sbjct: 312 AWINGICTNGQLQDVYNFI 330
>gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463014|gb|ACP39959.1| pentatricopeptide repeat
protein [Gossypium hirsutum]
Length = 288
Score = 284 bits (727), Expect = 2e-74
Identities = 137/258 (53%), Positives = 186/258 (72%)
Frame = -2
Query: 871 MREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHGCLPNRVMYSTLLDGVCR 692
M+E+ ++ LYPDM+TY AM KGF RLEEAC LF+ M+ G PN V YS LL+G+C+
Sbjct: 1 MKEIGLIDLYPDMMTYFAMIKGFCNAGRLEEACELFQAMKGQGFSPNAVTYSVLLEGICK 60
Query: 691 FGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEALGILDRMVVNGSAPNR 512
+ EKAL+LLGEMEK GG PNVITYTS+I+S+CE G+++EAL ILDRM PNR
Sbjct: 61 YRSTEKALELLGEMEKAGGNCSPNVITYTSMIKSFCEKGQTIEALRILDRMEACQCVPNR 120
Query: 511 VTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRIEKFPEAEKVFRS 332
+T TLI GLC +G V E YKLIDRV G G VS+++CYS+LV++L+RI + EAEK+FR
Sbjct: 121 ITVITLITGLCTKGHVEEAYKLIDRVAGRG-VSNSDCYSSLVLALIRINRLNEAEKLFRK 179
Query: 331 MLATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGCRLTIDSDIYSILLAGLCQD 152
ML + P +A S +I+++C G++LDG+ LY EIE++ +ID+DIYSILL GLC+
Sbjct: 180 MLVSGAKPSGIACSTMIREICHEGRVLDGFCLYNEIERMQYISSIDTDIYSILLVGLCRQ 239
Query: 151 GHLLESANLVGVMVEKDV 98
H +E+ L +M+ + +
Sbjct: 240 SHSVEAVKLARLMLRRRI 257
Score = 92.0 bits (227), Expect = 2e-16
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 38/251 (15%)
Frame = -2
Query: 910 FCDKGDMDEAGRLMREMSVVGLYPDMITYVAMTKGFVEGDRLEEACGLFRVMRDHG--CL 737
FC+ G ++EA L + M G P+ +TY + +G + E+A L M G C
Sbjct: 23 FCNAGRLEEACELFQAMKGQGFSPNAVTYSVLLEGICKYRSTEKALELLGEMEKAGGNCS 82
Query: 736 PNRVMYSTLLDGVCRFGDLEKALQLLGEMEKEGGESKPNVITYTSVIQSYCENGKSVEAL 557
PN + Y++++ C G +AL++L M E + PN IT ++I C G EA
Sbjct: 83 PNVITYTSMIKSFCEKGQTIEALRILDRM--EACQCVPNRITVITLITGLCTKGHVEEAY 140
Query: 556 GILDR----------------------------------MVVNGSAPNRVTASTLINGLC 479
++DR M+V+G+ P+ + ST+I +C
Sbjct: 141 KLIDRVAGRGVSNSDCYSSLVLALIRINRLNEAEKLFRKMLVSGAKPSGIACSTMIREIC 200
Query: 478 LEGRVNEVYKLIDRVVGEGFVSS--TECYSALVVSLMRIEKFPEAEKVFRSMLATSVHPD 305
EGRV + + L + + ++SS T+ YS L+V L R EA K+ R ML + +
Sbjct: 201 HEGRVLDGFCLYNEIERMQYISSIDTDIYSILLVGLCRQSHSVEAVKLARLMLRRRIRLE 260
Query: 304 SLASSLLIKKL 272
+ +IK L
Sbjct: 261 APYVDEIIKHL 271
Score = 57.4 bits (137), Expect = 5e-06
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Frame = -2
Query: 520 PNRVTASTLINGLCLEGRVNEVYKLIDRVVGEGFVSSTECYSALVVSLMRIEKFPEAEKV 341
P+ +T +I G C GR+ E +L + G+GF + YS L+ + + +A ++
Sbjct: 11 PDMMTYFAMIKGFCNAGRLEEACELFQAMKGQGFSPNAVTYSVLLEGICKYRSTEKALEL 70
Query: 340 FRSM--LATSVHPDSLASSLLIKKLCSRGKILDGYHLYIEIEKLGC---RLTIDSDIYSI 176
M + P+ + + +IK C +G+ ++ + +E C R+T+ +
Sbjct: 71 LGEMEKAGGNCSPNVITYTSMIKSFCEKGQTIEALRILDRMEACQCVPNRITVIT----- 125
Query: 175 LLAGLCQDGHLLESANLVGVMVEKDVDS 92
L+ GLC GH+ E+ L+ + + V +
Sbjct: 126 LITGLCTKGHVEEAYKLIDRVAGRGVSN 153