BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00016468
         (1471 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   814   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   809   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   803   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   802   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   799   0.0  

>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  814 bits (2102), Expect = 0.0
 Identities = 397/494 (80%), Positives = 437/494 (88%), Gaps = 4/494 (0%)
 Frame = -1

Query: 1471 AWGIKYLTMKNSGDAPKRYSHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 1292
            AWGIK+L     G    +Y+HCELDMSFLLGLS G+ PF NHDHARR LYQ+QKHS QAI
Sbjct: 696  AWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 755

Query: 1291 GFSTTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSK----MLPKPEFYNGQCAIV 1124
            GF TTN +IRVDT ++QLYYPQRPLFRT+ S+CLGK  +++    ++PKPE YNGQ AIV
Sbjct: 756  GFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIV 815

Query: 1123 AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDAINFGKIP 944
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+NKE   K++K +D +NFGKIP
Sbjct: 816  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIP 875

Query: 943  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 764
            SKIGRVDSLD+DGFPFIGANLQ+GDIVIG+ AESG D S+KLKHTE+GMVQKV+LSSNDE
Sbjct: 876  SKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDE 935

Query: 763  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPS 584
            GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTR+GIVPDIVINPH+FPS
Sbjct: 936  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPS 995

Query: 583  RQTPGQXXXXXXXXXXXXXXXERYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 404
            RQTPGQ                +YATPFST+SV+AITNQLHRAGFSRWGNERVYNGRTGE
Sbjct: 996  RQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGE 1055

Query: 403  MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 224
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1056 MVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1115

Query: 223  AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSCEDIVK 44
            AHGASANLHERLFTLSD SQMHIC+KCK+ ANVIQR V GGRKIRGPYCR C+S ++IVK
Sbjct: 1116 AHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVK 1175

Query: 43   VSVPYGAKLLCQEL 2
            V+VPYGAKLLCQEL
Sbjct: 1176 VNVPYGAKLLCQEL 1189


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  809 bits (2090), Expect = 0.0
 Identities = 390/494 (78%), Positives = 438/494 (88%), Gaps = 4/494 (0%)
 Frame = -1

Query: 1471 AWGIKYLTMKNSGDAPKRYSHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 1292
            AWGI YL M+N   A  +Y+HCELDMSFLLGLSA + PF NHDHARR LYQS+KHS QA+
Sbjct: 512  AWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAM 571

Query: 1291 GFSTTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAE----NSKMLPKPEFYNGQCAIV 1124
            GF+TTN +IRVDTNT+QLYYPQRPLFRTM+S+CLGK      ++ ++P+ E++NGQCAIV
Sbjct: 572  GFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIV 631

Query: 1123 AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDAINFGKIP 944
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKADV+NKE+  KK K ED++NFGK+ 
Sbjct: 632  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESVGKKPKFEDSVNFGKVQ 691

Query: 943  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 764
            SKIGRVDSLD+DGFPFIGANLQ GDIV+G+ AESG D S+KLKHTE+GMVQKV+LS+NDE
Sbjct: 692  SKIGRVDSLDDDGFPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDE 751

Query: 763  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPS 584
            GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIV+NPHAFPS
Sbjct: 752  GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAFPS 811

Query: 583  RQTPGQXXXXXXXXXXXXXXXERYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 404
            RQTPGQ               ++YATPFST+SVDA+T+QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 812  RQTPGQLLEAALGKGIACGGLQKYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGE 871

Query: 403  MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 224
            MI SLVFMGPT YQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 872  MIHSLVFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 931

Query: 223  AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSCEDIVK 44
            AHGA+ANLHERLFTLSD SQMHICRKC + ANVIQR V GGRKIRGPYCR+C+S E+IV+
Sbjct: 932  AHGAAANLHERLFTLSDSSQMHICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVR 991

Query: 43   VSVPYGAKLLCQEL 2
            V+VPYGAKLL QEL
Sbjct: 992  VNVPYGAKLLAQEL 1005


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  803 bits (2075), Expect = 0.0
 Identities = 394/490 (80%), Positives = 431/490 (87%)
 Frame = -1

Query: 1471 AWGIKYLTMKNSGDAPKRYSHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 1292
            AWGIK+L     G  P +YSHCELDMSFLLGLS G+ PF NHDHARR LYQ+QKHS QAI
Sbjct: 664  AWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAI 723

Query: 1291 GFSTTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSKMLPKPEFYNGQCAIVAVNV 1112
            GFSTTN +IRVDT ++QL+YPQRPLFRTM+S+CL       +LPKPE +NGQ AIVAVNV
Sbjct: 724  GFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL-------VLPKPELFNGQNAIVAVNV 776

Query: 1111 HLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDAINFGKIPSKIG 932
            HLGYNQEDSLVMNR+SLERGMFRSEHIRSYKA+V+NKE   K++K ED+I FGKI SKIG
Sbjct: 777  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIG 836

Query: 931  RVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDEGKNF 752
            RVDSLD+DGFPFIGAN+Q+GDIVIGK AESG D SVKLKHTE+GMVQKV+LSSNDEGKNF
Sbjct: 837  RVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNF 896

Query: 751  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPSRQTP 572
            AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +G+VPDIVINPHAFPSRQTP
Sbjct: 897  AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTP 956

Query: 571  GQXXXXXXXXXXXXXXXERYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGEMIRS 392
            GQ               +RYATPFST+SVD I +QLHRA FSRWGNERVYNGRTGEM+RS
Sbjct: 957  GQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRS 1016

Query: 391  LVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 212
            L+FMGPT YQRL+HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA
Sbjct: 1017 LIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1076

Query: 211  SANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSCEDIVKVSVP 32
            SANLHERLFTLSD S+MHIC+KCK+ ANVIQR V GGRKIRGPYCR C+S +D+VKVSVP
Sbjct: 1077 SANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVP 1136

Query: 31   YGAKLLCQEL 2
            YGAKLLCQEL
Sbjct: 1137 YGAKLLCQEL 1146


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  802 bits (2071), Expect = 0.0
 Identities = 387/494 (78%), Positives = 441/494 (89%), Gaps = 4/494 (0%)
 Frame = -1

Query: 1471 AWGIKYLTMKNSGDAPKRYSHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 1292
            AWGIKYL +K   D P +Y+HCELDMSFLLGLS G+ P+ NHDHARR LYQS+KHS QAI
Sbjct: 692  AWGIKYL-LKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAI 750

Query: 1291 GFSTTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGKAENSK----MLPKPEFYNGQCAIV 1124
            GFSTTN +IRVDT ++QLYYPQRPLFRTM+S+CLGK   S+    ++P+PE++NGQ AIV
Sbjct: 751  GFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIV 810

Query: 1123 AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDAINFGKIP 944
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYK++V+N E+  KK+K ED+++FGK+ 
Sbjct: 811  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQ 870

Query: 943  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 764
            SKIGRVDSLD+DGFPFIGANLQ GDIVIG+ AESGVD S+KLKHTE+GMVQKV++S+ND+
Sbjct: 871  SKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDD 930

Query: 763  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPS 584
            GKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPS
Sbjct: 931  GKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 990

Query: 583  RQTPGQXXXXXXXXXXXXXXXERYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 404
            RQTPGQ                R+ATPFST+SVDAI +QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 991  RQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGE 1050

Query: 403  MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 224
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLI
Sbjct: 1051 MLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLI 1110

Query: 223  AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSCEDIVK 44
            AHGA+ANLHERLFTLSD + MHICR+CK+ +NVIQR+V GGRK+RGPYCRYC+S E+IVK
Sbjct: 1111 AHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVK 1170

Query: 43   VSVPYGAKLLCQEL 2
            V+VPYGAKLLCQEL
Sbjct: 1171 VNVPYGAKLLCQEL 1184


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  799 bits (2063), Expect = 0.0
 Identities = 393/494 (79%), Positives = 440/494 (89%), Gaps = 4/494 (0%)
 Frame = -1

Query: 1471 AWGIKYLTMKNSGDAPKRYSHCELDMSFLLGLSAGLTPFCNHDHARRALYQSQKHSHQAI 1292
            AW IK+L M++ G    +YSHCELDMSFLLGLS GL PF NHDHARRAL+QSQKHS+QAI
Sbjct: 693  AWSIKHL-MEDEGTT--KYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAI 749

Query: 1291 GFSTTNSSIRVDTNTNQLYYPQRPLFRTMLSECLGK----AENSKMLPKPEFYNGQCAIV 1124
            GFS TNS+ RVDT ++QL+YPQRPLFRTM ++CLG     + ++ +LPKPEFYNGQ AIV
Sbjct: 750  GFSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIV 809

Query: 1123 AVNVHLGYNQEDSLVMNRSSLERGMFRSEHIRSYKADVNNKEAPPKKQKIEDAINFGKIP 944
            AVNVHLGYNQEDSLVMNR+SLERGMFRSEHIRSYKA+V+NKE+  K++K +DAINFGK  
Sbjct: 810  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQ 869

Query: 943  SKIGRVDSLDEDGFPFIGANLQTGDIVIGKHAESGVDQSVKLKHTEKGMVQKVILSSNDE 764
            SKIGRVDSLD+DGFP+IGANLQ+GDIVIG+ AESG D S+KLKHTEKGMVQKV+LSSND+
Sbjct: 870  SKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDD 929

Query: 763  GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTREGIVPDIVINPHAFPS 584
            GKN+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIVINPHAFPS
Sbjct: 930  GKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 989

Query: 583  RQTPGQXXXXXXXXXXXXXXXERYATPFSTVSVDAITNQLHRAGFSRWGNERVYNGRTGE 404
            RQTPGQ                +YATPFST SVDAIT+QLHRAGFSRWG+ERVYNGRTGE
Sbjct: 990  RQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGE 1049

Query: 403  MIRSLVFMGPTCYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 224
            M+RSL+FMGPT YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 1050 MMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1109

Query: 223  AHGASANLHERLFTLSDCSQMHICRKCKHPANVIQRTVMGGRKIRGPYCRYCQSCEDIVK 44
            AHGASANLHERLFTLSD SQMH+C+KCK+ A+VIQR+V GGRK+RGPYCR C+S +DIV+
Sbjct: 1110 AHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVR 1169

Query: 43   VSVPYGAKLLCQEL 2
            V+VPYGAKLLCQEL
Sbjct: 1170 VNVPYGAKLLCQEL 1183