BLASTX nr result
ID: Cnidium21_contig00016247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00016247
(1525 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|2... 208 e-106
gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica] 203 e-100
ref|XP_002892320.1| skp1/ask-interacting protein 16 [Arabidopsis... 210 e-100
ref|NP_563759.1| F-box protein SKIP16 [Arabidopsis thaliana] gi|... 209 3e-98
gb|AAX96082.1| expressed protein [Oryza sativa Japonica Group] g... 176 3e-82
>ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|222837399|gb|EEE75778.1|
predicted protein [Populus trichocarpa]
Length = 442
Score = 208 bits (529), Expect(2) = e-106
Identities = 106/183 (57%), Positives = 130/183 (71%), Gaps = 2/183 (1%)
Frame = -1
Query: 1294 IEMLGGLEIHTILTKLGPQETIIVGFVSHKFQDWASDDFLWSQFCAEELLLYSPEDPLGN 1115
I LG L ++ ILTKLGP+ET V VS +F+D AS++ LWS FC ++L L +P D GN
Sbjct: 5 INKLGDLALNIILTKLGPKETAKVSCVSKRFKDLASEESLWSLFCLQDLDLSAPLDHHGN 64
Query: 1114 ATPSFKAAYQAWRKSFGMYPWSLVIRVRRCWERIKSWLVVNFPEAMTTLRKGATEDVINN 935
SFKA Y+ WR++F MYPWSLV RV+ CW+R+KSWL NFPE TL +GA+E I
Sbjct: 65 PLRSFKATYKLWREAFCMYPWSLVKRVKSCWDRLKSWLTTNFPEVKATLGRGASEGEIQE 124
Query: 934 LETSLKVKLPVPTRVLYRFCDGQNLA--KYSESFSTSLLGLIGGYSFCDYLVNVYLLPLA 761
LE LKVKLP+PTR+LYRF DGQNL + + LLGLIGGY F D+LVNVYLLPL
Sbjct: 125 LERILKVKLPLPTRLLYRFHDGQNLTGENLNTDAAACLLGLIGGYCFYDHLVNVYLLPLH 184
Query: 760 EVL 752
EV+
Sbjct: 185 EVI 187
Score = 206 bits (523), Expect(2) = e-106
Identities = 110/239 (46%), Positives = 142/239 (59%)
Frame = -3
Query: 755 SSTGRVKFFLLNCKNGELFVGARNLFEYGKMRPCVPGDLIHYVHNVRDFQQEDGLLLWLE 576
SS+ KFF LNC +G+L+VG +NL G+M PCVP LI VH+ QQ+D +LLWLE
Sbjct: 211 SSSNIGKFFFLNCSDGQLYVGTQNLLTIGEMIPCVPQTLISPVHDFNIDQQQDAMLLWLE 270
Query: 575 EHXXXXXXXXXXXXXXXXXRYISLLPEESSLCYAAVTNGVQVRASAIFIPELSPELRETA 396
EH + ISL PEES LC AVTNGV+VRASAIF+PE R+
Sbjct: 271 EHGHRLHNGMIKLRDEGNIKSISLFPEESPLCSTAVTNGVKVRASAIFVPEAVDLSRK-- 328
Query: 395 LESNYYCFAFSIRLSLKLGGCIVNGMRFDSCQLCLVQWIIQGSNNIVTRITEETTEWENP 216
Y FA+SIR+SL GCI+NGMRF SCQL L W+I + + + + E + P
Sbjct: 329 -----YLFAYSIRMSLPPEGCIINGMRFSSCQLHLRHWVISADDTVASNVNAEAVIGKFP 383
Query: 215 LLHPGDEEYVFEGHISMFTPKGSIKGSLTFVPGRLTHPEGAXXXXXXXXXXXEYPDYIF 39
LL PG++E+V+E + +P GS++GS TFVPGRL P+G + PDYIF
Sbjct: 384 LLLPGEKEFVYESCTPLRSPTGSVEGSFTFVPGRLIDPKGMPFEAEVARFPLQLPDYIF 442
>gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica]
Length = 443
Score = 203 bits (517), Expect(2) = e-100
Identities = 102/187 (54%), Positives = 134/187 (71%), Gaps = 4/187 (2%)
Frame = -1
Query: 1300 MGIEMLGGLEIHTILTKLGPQETIIVGFVSHKFQDWASDDFLWSQFCAEELLLYSPEDPL 1121
M +E +G L +H IL+KLG +++ VS K + ASD+ LWS FCA +L L P DPL
Sbjct: 1 MNLEAVGDLALHIILSKLGAEDSAKAACVSTKLRASASDESLWSLFCARDLHLSQPLDPL 60
Query: 1120 GNATPSFKAAYQAWRKSFGMYPWSLVIRVRRCWERIKSWLVVNFPEAMTTLRKGATEDVI 941
GN PSFK +YQ WR +F MYPWSLV RV+RCW++I++WL +NFPEA++TL+KGA+E I
Sbjct: 61 GNLAPSFKESYQLWRVTFKMYPWSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADI 120
Query: 940 NNLETSLKVKLPVPTRVLYRFCDGQNLAKYSESFSTSL----LGLIGGYSFCDYLVNVYL 773
+E LKVKLP+PTR+LYRF +GQ A + F +L LGLIGGY+F D LV VYL
Sbjct: 121 QEVEKILKVKLPLPTRILYRFHNGQ--AFEEKHFQNNLVGCPLGLIGGYAFYDQLVTVYL 178
Query: 772 LPLAEVL 752
+PL +V+
Sbjct: 179 MPLRQVV 185
Score = 191 bits (484), Expect(2) = e-100
Identities = 103/233 (44%), Positives = 139/233 (59%)
Frame = -3
Query: 737 KFFLLNCKNGELFVGARNLFEYGKMRPCVPGDLIHYVHNVRDFQQEDGLLLWLEEHXXXX 558
K F LNC +G+L+VG RNL G+M PCVP LI +H+ +Q+DG+LLWLEEH
Sbjct: 215 KLFFLNCTSGQLYVGTRNLPTDGQMLPCVPDALISSIHDCNVDRQQDGMLLWLEEHGRRL 274
Query: 557 XXXXXXXXXXXXXRYISLLPEESSLCYAAVTNGVQVRASAIFIPELSPELRETALESNYY 378
R IS PEES LC A+TNGV+VRASA+F+PE + +L T S Y
Sbjct: 275 ENGIIKLRQEENFRTISQFPEESPLCSTAITNGVKVRASAVFVPECA-DLENT---SEKY 330
Query: 377 CFAFSIRLSLKLGGCIVNGMRFDSCQLCLVQWIIQGSNNIVTRITEETTEWENPLLHPGD 198
F++SIR+S GC++NGM F SCQL WII+ ++ +V + E + PLL PG+
Sbjct: 331 TFSYSIRMSFLPEGCVINGMPFSSCQLNRRHWIIRSNDVVVADVGGEAVIGQYPLLRPGE 390
Query: 197 EEYVFEGHISMFTPKGSIKGSLTFVPGRLTHPEGAXXXXXXXXXXXEYPDYIF 39
EE+V+E + + + GSI+GS TFVPG L P+G + P+YIF
Sbjct: 391 EEFVYESYSCLPSSSGSIEGSFTFVPGSLRVPKGGPFEVAVARFPLQLPNYIF 443
>ref|XP_002892320.1| skp1/ask-interacting protein 16 [Arabidopsis lyrata subsp. lyrata]
gi|297338162|gb|EFH68579.1| skp1/ask-interacting protein
16 [Arabidopsis lyrata subsp. lyrata]
Length = 435
Score = 210 bits (534), Expect(2) = e-100
Identities = 105/184 (57%), Positives = 134/184 (72%)
Frame = -1
Query: 1300 MGIEMLGGLEIHTILTKLGPQETIIVGFVSHKFQDWASDDFLWSQFCAEELLLYSPEDPL 1121
MG+E G L +H +L+K+GP+ T V VS + + AS++ LWS FC+ +L + +P DP
Sbjct: 1 MGLEDAGDLILHIVLSKIGPESTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPH 60
Query: 1120 GNATPSFKAAYQAWRKSFGMYPWSLVIRVRRCWERIKSWLVVNFPEAMTTLRKGATEDVI 941
G+ PSFK AYQ WR+SF MYPW+LV RVR CW+++K WL +NFPEA TLRKGATED +
Sbjct: 61 GDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDKLKLWLSLNFPEAKATLRKGATEDDL 120
Query: 940 NNLETSLKVKLPVPTRVLYRFCDGQNLAKYSESFSTSLLGLIGGYSFCDYLVNVYLLPLA 761
LETSLKVKLP+PTR+LYRF DGQ L+ S + LGLIGGYS + VNVYLLPL
Sbjct: 121 QELETSLKVKLPLPTRLLYRFVDGQELS--SSNGLDGSLGLIGGYSAYSHDVNVYLLPLK 178
Query: 760 EVLQ 749
EV++
Sbjct: 179 EVIR 182
Score = 184 bits (466), Expect(2) = e-100
Identities = 104/239 (43%), Positives = 135/239 (56%)
Frame = -3
Query: 755 SSTGRVKFFLLNCKNGELFVGARNLFEYGKMRPCVPGDLIHYVHNVRDFQQEDGLLLWLE 576
S +K FLL+C NG+LF G N ++ PCVP L+ VH++ QQ+D +LLWLE
Sbjct: 205 SVVASLKIFLLDCTNGQLFTGTSNR----QLLPCVPDSLVRSVHDINGDQQQDAMLLWLE 260
Query: 575 EHXXXXXXXXXXXXXXXXXRYISLLPEESSLCYAAVTNGVQVRASAIFIPELSPELRETA 396
EH + ISL PE LC AVTNGVQVRAS++FIPE+S LR+
Sbjct: 261 EHGRRLQTGTIKVREQYNVKSISLFPEIPPLCSVAVTNGVQVRASSVFIPEIS-NLRD-- 317
Query: 395 LESNYYCFAFSIRLSLKLGGCIVNGMRFDSCQLCLVQWIIQGSNNIVTRITEETTEWENP 216
E Y +A+SIR+SL GCI+NG SCQL +W+I+ N + + E + P
Sbjct: 318 -EPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRRWVIRADNEAIDNVNGEAVIGKYP 376
Query: 215 LLHPGDEEYVFEGHISMFTPKGSIKGSLTFVPGRLTHPEGAXXXXXXXXXXXEYPDYIF 39
LL G+EE+V+E S T GSI+GS TFVPG L P+G+ E PDYIF
Sbjct: 377 LLQAGEEEFVYESCSSFPTTAGSIEGSFTFVPGSLRDPKGSQFEVKVAEFPLELPDYIF 435
>ref|NP_563759.1| F-box protein SKIP16 [Arabidopsis thaliana]
gi|75264072|sp|Q9LND7.1|SKI16_ARATH RecName: Full=F-box
protein SKIP16; AltName: Full=SKP1-interacting partner 16
gi|8810473|gb|AAF80134.1|AC024174_16 Contains similarity
to a F-box protein FBA from Mus musculus gb|AF233226.
ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534,
gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939,
gb|T21404, gb|T44511, gb|H37689 come from this gene
[Arabidopsis thaliana]
gi|16930491|gb|AAL31931.1|AF419599_1 At1g06110/T21E18_13
[Arabidopsis thaliana] gi|20466211|gb|AAM20423.1| unknown
protein [Arabidopsis thaliana] gi|25084008|gb|AAN72153.1|
unknown protein [Arabidopsis thaliana]
gi|332189819|gb|AEE27940.1| F-box protein SKIP16
[Arabidopsis thaliana]
Length = 436
Score = 209 bits (531), Expect(2) = 3e-98
Identities = 105/190 (55%), Positives = 134/190 (70%)
Frame = -1
Query: 1300 MGIEMLGGLEIHTILTKLGPQETIIVGFVSHKFQDWASDDFLWSQFCAEELLLYSPEDPL 1121
MG+E G L +H +L+K+GP+ T V VS + + AS++ LWS FC+ +L + +P DP
Sbjct: 1 MGLEDAGDLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPH 60
Query: 1120 GNATPSFKAAYQAWRKSFGMYPWSLVIRVRRCWERIKSWLVVNFPEAMTTLRKGATEDVI 941
G+ PSFK AYQ WR+SF MYPW+LV RVR CW+ +K WL +NFPEA TLRKG TED +
Sbjct: 61 GDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDL 120
Query: 940 NNLETSLKVKLPVPTRVLYRFCDGQNLAKYSESFSTSLLGLIGGYSFCDYLVNVYLLPLA 761
ETSLKVKLP+PTR+LYRF DGQ L+ S + LGLIGGYS + VNVYLLPL
Sbjct: 121 QEFETSLKVKLPLPTRLLYRFVDGQELS--SPNGLDGSLGLIGGYSAYSHDVNVYLLPLK 178
Query: 760 EVLQLEE*SF 731
EV++ + SF
Sbjct: 179 EVMRETKESF 188
Score = 177 bits (450), Expect(2) = 3e-98
Identities = 101/239 (42%), Positives = 132/239 (55%)
Frame = -3
Query: 755 SSTGRVKFFLLNCKNGELFVGARNLFEYGKMRPCVPGDLIHYVHNVRDFQQEDGLLLWLE 576
S +K FLL+C G+LF G N ++ PCVP L+ VH+ QQ+D +LLWLE
Sbjct: 206 SVVASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQDAMLLWLE 261
Query: 575 EHXXXXXXXXXXXXXXXXXRYISLLPEESSLCYAAVTNGVQVRASAIFIPELSPELRETA 396
EH + ISL PE LC +VTNGVQVRAS++FIPE+S LR+
Sbjct: 262 EHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS-NLRD-- 318
Query: 395 LESNYYCFAFSIRLSLKLGGCIVNGMRFDSCQLCLVQWIIQGSNNIVTRITEETTEWENP 216
+ Y +A+SIR+SL GCI+NG SCQL W+I+ N ++ + E + P
Sbjct: 319 -QPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIGKYP 377
Query: 215 LLHPGDEEYVFEGHISMFTPKGSIKGSLTFVPGRLTHPEGAXXXXXXXXXXXEYPDYIF 39
LL G+EE+V+E S T GSI GS TFVPG L P+G+ E PDYIF
Sbjct: 378 LLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDYIF 436
>gb|AAX96082.1| expressed protein [Oryza sativa Japonica Group]
gi|108864216|gb|ABA92495.2| expressed protein [Oryza
sativa Japonica Group]
Length = 457
Score = 176 bits (445), Expect(2) = 3e-82
Identities = 87/188 (46%), Positives = 122/188 (64%), Gaps = 2/188 (1%)
Frame = -1
Query: 1306 GKMGIEMLGGLEIHTILTKLGPQETIIVGFVSHKFQDWASDDFLWSQFCAEELLLYSPED 1127
G G+E L GL + T++ K G ++ + S + +D A DD LW +FCA++L L++P
Sbjct: 16 GGAGLEALEGLALDTVIAKAGARQAAALACASTRLRDAAGDDALWRRFCADDLALHAPLA 75
Query: 1126 PLGNATPSFKAAYQAWRKSFGMYPWSLVIRVRRCWERIKSWLVVNFPEAMTTLRKGATED 947
P G A PSFK AY+ W +SFGMYP LV RV+ W +KSWL NFPEA TL KG +E
Sbjct: 76 PDGRALPSFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEAHKTLNKGVSEA 135
Query: 946 VINNLETSLKVKLPVPTRVLYRFCDGQ--NLAKYSESFSTSLLGLIGGYSFCDYLVNVYL 773
I + E L KLP+PT++LYRFC+GQ + E+ + LG+IGGY F D+L+NV+L
Sbjct: 136 QIQSAEDDLGFKLPLPTKLLYRFCNGQLPLSEHHHENMRMAHLGIIGGYVFYDHLINVHL 195
Query: 772 LPLAEVLQ 749
PL ++++
Sbjct: 196 SPLEQIVE 203
Score = 157 bits (398), Expect(2) = 3e-82
Identities = 100/235 (42%), Positives = 131/235 (55%)
Frame = -3
Query: 743 RVKFFLLNCKNGELFVGARNLFEYGKMRPCVPGDLIHYVHNVRDFQQEDGLLLWLEEHXX 564
R K F LNC + +L+VG NL + G+M PCVP LI + D Q DGLLLWLEEH
Sbjct: 232 RPKTFFLNCSDDQLYVGTINLQD-GEMLPCVPKSLIRPTNT--DMPQ-DGLLLWLEEHLR 287
Query: 563 XXXXXXXXXXXXXXXRYISLLPEESSLCYAAVTNGVQVRASAIFIPELSPELRETALESN 384
RYISL PE S C +A+TNGV+VRASA+F PE PE R +
Sbjct: 288 RLQNGMIKIRMLKTSRYISLFPEASPSCTSAMTNGVKVRASAVFAPE-HPESRRPGAKCL 346
Query: 383 YYCFAFSIRLSLKLGGCIVNGMRFDSCQLCLVQWIIQGSNNIVTRITEETTEWENPLLHP 204
Y A+SIRLS+ C++ G+ + SCQL WII+ + +V+ + E + PLL
Sbjct: 347 Y---AYSIRLSVP-EACMLGGVYYSSCQLYSRHWIIRWRDRVVSDVNGEGVIGKYPLLTT 402
Query: 203 GDEEYVFEGHISMFTPKGSIKGSLTFVPGRLTHPEGAXXXXXXXXXXXEYPDYIF 39
G EE+V+E + GS++GS TFVPG+L+ PEG E P+YIF
Sbjct: 403 GQEEFVYESCTPLPDSPGSVEGSFTFVPGKLSRPEGKPFEVTVAAFPLEIPEYIF 457