BLASTX nr result

ID: Cnidium21_contig00016239 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00016239
         (608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635379.1| PREDICTED: HIV Tat-specific factor 1 homolog...    98   1e-18
emb|CBI18792.3| unnamed protein product [Vitis vinifera]               97   2e-18
ref|XP_002316170.1| predicted protein [Populus trichocarpa] gi|2...    91   2e-16
ref|XP_004146418.1| PREDICTED: HIV Tat-specific factor 1 homolog...    89   5e-16
ref|XP_003536163.1| PREDICTED: HIV Tat-specific factor 1 homolog...    89   8e-16

>ref|XP_003635379.1| PREDICTED: HIV Tat-specific factor 1 homolog [Vitis vinifera]
          Length = 408

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 3/107 (2%)
 Frame = +3

Query: 3   LTESTLV*SEGRTEWQTLSTIPWVITGIFQQ-VHFP-LKNGDEYEHRPKEVMEA*AQTQA 176
           L+E++L+ SEGR++WQ LS+IP + T I Q  V +P + + DE+E   KEV EA A    
Sbjct: 55  LSENSLLWSEGRSDWQPLSSIPELTTAISQPGVDWPPINDEDEFEKWQKEVREAEALKNG 114

Query: 177 EMSKTDSKKLND-DAERSSTPPDGKEEFTDDDGTTYEGPRGLRAWVP 314
             S +      D D ER STPPDG++EFTDDDGTTY+  RGLRAWVP
Sbjct: 115 SASGSVGGDFGDEDNERPSTPPDGEDEFTDDDGTTYKWDRGLRAWVP 161


>emb|CBI18792.3| unnamed protein product [Vitis vinifera]
          Length = 486

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
 Frame = +3

Query: 3   LTESTLV*SEGRTEWQTLSTIPWVITGIFQ------QVHFPLKNGDEYEHRPKEVMEA*A 164
           L+E++L+ SEGR++WQ LS+IP + T I Q          P+ + DE+E   KEV EA A
Sbjct: 55  LSENSLLWSEGRSDWQPLSSIPELTTAISQPGVDCSSAGPPINDEDEFEKWQKEVREAEA 114

Query: 165 QTQAEMSKTDSKKLND-DAERSSTPPDGKEEFTDDDGTTYEGPRGLRAWVP 314
                 S +      D D ER STPPDG++EFTDDDGTTY+  RGLRAWVP
Sbjct: 115 LKNGSASGSVGGDFGDEDNERPSTPPDGEDEFTDDDGTTYKWDRGLRAWVP 165


>ref|XP_002316170.1| predicted protein [Populus trichocarpa] gi|222865210|gb|EEF02341.1|
           predicted protein [Populus trichocarpa]
          Length = 497

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 13/117 (11%)
 Frame = +3

Query: 3   LTESTLV*SEGRTEWQTLSTIPWVITGIFQQVHFPLK------NGDEYEHRPKEVMEA*A 164
           L ESTLV SEGR++WQ LS+IP +++G  QQ     +      + DE+E   +EV EA  
Sbjct: 54  LLESTLVWSEGRSDWQPLSSIPELMSGTSQQGSDYSRAVSSNDDEDEFEKWQREVKEA-- 111

Query: 165 QTQAEMSKTDSKKLN-------DDAERSSTPPDGKEEFTDDDGTTYEGPRGLRAWVP 314
           + +AE  K  S   N       DD++R  +PPDG++EFTDDDGTTY+  R LRAWVP
Sbjct: 112 EAEAERLKNGSLPGNTGDDFGIDDSDRILSPPDGEDEFTDDDGTTYKWDRSLRAWVP 168


>ref|XP_004146418.1| PREDICTED: HIV Tat-specific factor 1 homolog [Cucumis sativus]
          Length = 496

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
 Frame = +3

Query: 3   LTESTLV*SEGRTEWQTLSTIPWVITGIFQQ-----VHFPLKNGD--EYEHRPKEVMEA* 161
           L ESTL  SEG++EWQ LS+IP + T ++ Q        P  N D  E E   KEV E  
Sbjct: 44  LLESTLAWSEGQSEWQPLSSIPGLTTEVYGQDSNLPTTVPANNNDDDELEKYQKEVGETE 103

Query: 162 AQTQAEMSKTDSKKLNDDAERSSTPPDGKEEFTDDDGTTYEGPRGLRAWVP 314
           A T+      +   +  D ER +TPP+G+EEFTDDDGT Y+  R LRAWVP
Sbjct: 104 ATTKVPSGGRNFGLVEGDLERPTTPPEGEEEFTDDDGTPYKWDRVLRAWVP 154


>ref|XP_003536163.1| PREDICTED: HIV Tat-specific factor 1 homolog [Glycine max]
          Length = 503

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 51/114 (44%), Positives = 66/114 (57%), Gaps = 10/114 (8%)
 Frame = +3

Query: 3   LTESTLV*SEGRTEWQTLSTIPWVITGIFQQ-----VHFPLKNGDEYEHRPKEVMEA*AQ 167
           L+E+T V SEGR+EWQ LS++  +   I QQ           + DE+E   KE+ EA AQ
Sbjct: 53  LSENTFVWSEGRSEWQPLSSVSDLWAQINQQGPDSSTTVSAPDVDEFERWQKEIQEAEAQ 112

Query: 168 TQAE-----MSKTDSKKLNDDAERSSTPPDGKEEFTDDDGTTYEGPRGLRAWVP 314
            +            S    +D+ER STPP+G+EEFTDDDGT Y+  R LRAWVP
Sbjct: 113 VEGSEFGSLSGNAGSTGAGEDSERPSTPPEGEEEFTDDDGTVYKWDRNLRAWVP 166


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