BLASTX nr result
ID: Cnidium21_contig00015335
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00015335
(2098 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [... 172 4e-40
ref|XP_002891459.1| predicted protein [Arabidopsis lyrata subsp.... 160 2e-36
ref|XP_002307020.1| predicted protein [Populus trichocarpa] gi|2... 154 9e-35
ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containin... 152 3e-34
ref|XP_002310510.1| predicted protein [Populus trichocarpa] gi|2... 150 1e-33
>ref|XP_003602587.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
gi|355491635|gb|AES72838.1| Zinc finger CCCH
domain-containing protein [Medicago truncatula]
Length = 1084
Score = 172 bits (435), Expect = 4e-40
Identities = 116/299 (38%), Positives = 161/299 (53%), Gaps = 33/299 (11%)
Frame = +2
Query: 1058 SGKPDVLDTVRSEATSSN---QCLMSTEQFSDLTR---SLAQLLEDGKQLPELYAALNAS 1219
+G+P+++D+ S+ +S N Q ++S EQ + LT SLA +L G+QLP+LYAALN+
Sbjct: 721 TGEPNIMDSGLSQVSSINPPVQNVVSNEQLAQLTNLSASLAHILGAGQQLPQLYAALNSH 780
Query: 1220 NALGFMQSSVANPDGVPASSS-----------SQYDPVNDSMELIKSVISEQPD------ 1348
+ +P S + QYDP+NDS+E + S P
Sbjct: 781 ELKDSPSQAKTQVPAMPVSITCIKPDPAVELPKQYDPMNDSIEQKNADASGVPPAIPPSK 840
Query: 1349 ---EIALPSQLPLTG-EPSGDGPLGTHCKDVELDNNSHHSIEKHQFADCENEEHGMVKAE 1516
E+ + SQL G E G+ G + V+ DN H ++ + +N E A
Sbjct: 841 TIAEVEILSQLSTPGRENFGNSIKGASSEHVKSDNLIHLQPGQNTVVNKDNNEE---VAR 897
Query: 1517 EKEEGQDGSKLSDSEGDDKADEK------KKNSDGKSLRAFKFSLAEFVKELLKPTWKAG 1678
E++ QDG K + G D+ K+ + K RAFKF+LAEFVKELLKPTWK G
Sbjct: 898 ERKNSQDGHKSTKENGPQNMDQNAGPDDAKQTKEMKGSRAFKFALAEFVKELLKPTWKEG 957
Query: 1679 QINKEAHKTIXXXXXXXXMSSVQASHIPQTQEKIDNYLSAYKPKLSKLVQAYADKVQKE 1855
+I KE +KTI ++Q ++IPQTQEKID YLS KPKL+KLVQAY +KVQKE
Sbjct: 958 KITKEDYKTIVKKVVDKVTGTIQEANIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKE 1016
Score = 59.3 bits (142), Expect = 4e-06
Identities = 84/331 (25%), Positives = 136/331 (41%), Gaps = 43/331 (12%)
Frame = +2
Query: 530 RARVASFDRRN-HEPCRSGTIPCKFFASGNCRNGKACRFSHDDQTRGSFNNYEPNDYRQG 706
R R SF+ H P R+ PCKFFASGNCRNGK CRFSHD Q
Sbjct: 430 RHRDNSFEHGGRHVPNRTIDAPCKFFASGNCRNGKHCRFSHDTQA--------------- 474
Query: 707 VDSRANMAPQREGSKWSGSASDLNLPKRHGNKNEGLGEQRAMRSSVDASAP-RDNRF--- 874
R+ + R+ +W+ R+ +++ + ++R + S+ + RD+R+
Sbjct: 475 --CRSPIRRLRD-DRWT----------RNPSRDHQMLDRRKLSDSISPNKRLRDDRWGSD 521
Query: 875 --MAHRMDIDEATKNNQ----SDDFRLTTHSSSGMGASKSRGTDIRGVDIEGSSTHTEDQ 1036
MA ++++ K N SD +L + + +GA++ TD+ D G H D+
Sbjct: 522 SDMADPDRVEDSPKRNDTVSGSDAAKLIENKNGNVGATEPEFTDLPITDGWG---HGLDK 578
Query: 1037 LPTLTGTSGKPDVL------DTVRSEATSSNQCLMSTEQFSDLTRSLAQL---------- 1168
+G KP +L D +E T +N + +D+ A++
Sbjct: 579 ----SGLHAKPPILSDKKEADIWIAENTGANMHGSQSIGTTDIWPGDAEMSPDWNYRMGS 634
Query: 1169 ---LEDGKQLPE------LYAALNASNALGFM--QSSVANPDGVPASSSSQYDPVNDSME 1315
+E+ KQ Y A++ N + Q+ N D V +S Y V S
Sbjct: 635 SSHMEEHKQKEHDVSQGGTYLAISEHNGIQLAPGQNINQNTDNVNPLHTSSYHAVGQSQV 694
Query: 1316 LIKSVISEQPDEIALPSQ-----LPLTGEPS 1393
+ + S + A+ SQ TGEP+
Sbjct: 695 DVPILSSREGIVDAIHSQEVSTEQKYTGEPN 725
>ref|XP_002891459.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337301|gb|EFH67718.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 735
Score = 160 bits (404), Expect = 2e-36
Identities = 136/499 (27%), Positives = 214/499 (42%), Gaps = 73/499 (14%)
Frame = +2
Query: 575 RSGTIPCKFFASGN--CRNGKACRFSHDD--QTRGSFNNYEPNDY--RQGVDSRANMAPQ 736
RS +PC+FFASG+ CRNG CRFSH RGS N+ RQ ++ + +
Sbjct: 253 RSSNVPCRFFASGSGYCRNGNNCRFSHHGAPSARGSPERKPQNEIYSRQENNNHSGTTER 312
Query: 737 -REGSKWS-------GSASDLNLPKRHGNKNEGLGEQRAMRSSVDASAPRDNRFMAHRMD 892
R +W+ G +S++ + + +E G + ++ S + +
Sbjct: 313 MRNSHRWNDIERSDAGKSSEVEISRVSKGMSEAKGNNSSWIDDMEMSPDWNYGVKTLKKP 372
Query: 893 IDE----ATKNNQSDDFR------------------------------------LTTHSS 952
++E ++++QS + T H+
Sbjct: 373 VNEEHGGVSQSSQSQVLKDALAPAYEHGAAAIAQQDGNQRNIGMFSTVGEKTVASTHHNF 432
Query: 953 SGMGASKSRGTDIRGVDIEGSSTHTEDQLPTLTGTS--------GKPDVLDTVRSEATSS 1108
S A+ + +IE S P G S P L++ E ++
Sbjct: 433 SNNLANSAPPVQAFSQNIENHSAVPYQSTPLAVGGSQVLLPAATNLPGGLNSSNPENGNA 492
Query: 1109 NQCLMSTE--QFSDLTRSLAQLLEDGKQLPELYAALNASNAL------GFMQSSVANPDG 1264
+ E S+++ SLAQ +G+ +P L + LN A+ G + S
Sbjct: 493 QNTVSREELNHISNISASLAQFFGNGQPIPHLQSTLNPKQAMQVPEVYGTKEQSTHTQSD 552
Query: 1265 VPASSSSQYDPVNDSMELIKSVISEQPDEIALPS-QLPLTGEPSGDGPLGTHCKDVELDN 1441
+P+++S V+ L + + +++ +P + L G P
Sbjct: 553 LPSNNSIHTGGVSAVTAL--PINNSDTEQLRIPEIVISLAGNPKA--------------- 595
Query: 1442 NSHHSIEKHQFADCENEEHGMVKAEEKEEGQDGSKLSDSEGDDKA--DEKKKNSDGKSLR 1615
+S + EK + E G EEK+ +DG + + E DD A ++ KK D K +R
Sbjct: 596 SSEENREKKTDEEASKEPDGRKTGEEKDAAEDGENVVEEEEDDGAVDEDNKKEKDPKGMR 655
Query: 1616 AFKFSLAEFVKELLKPTWKAGQINKEAHKTIXXXXXXXXMSSVQASHIPQTQEKIDNYLS 1795
AFKF+L E VKELLKP WK G +NK+A+K I ++Q +IPQTQEKID+YLS
Sbjct: 656 AFKFALVEIVKELLKPAWKEGGMNKDAYKNIVKKVVDKVTGAIQTGNIPQTQEKIDHYLS 715
Query: 1796 AYKPKLSKLVQAYADKVQK 1852
A KPKL+KLVQAY KV+K
Sbjct: 716 ASKPKLTKLVQAYVSKVKK 734
>ref|XP_002307020.1| predicted protein [Populus trichocarpa] gi|222856469|gb|EEE94016.1|
predicted protein [Populus trichocarpa]
Length = 858
Score = 154 bits (389), Expect = 9e-35
Identities = 112/311 (36%), Positives = 158/311 (50%), Gaps = 32/311 (10%)
Frame = +2
Query: 1019 THTEDQLPTLTGTSGKPDVLDTVRSEATSSN------QCLMSTE---QFSDLTRSLAQLL 1171
T T Q TL ++ DT A +N Q + S E Q ++L+ +L QLL
Sbjct: 548 TTTNPQNQTLFQERAVINIPDTGNPNAPHANLGIPTAQNMASNEHLTQLTNLSATLVQLL 607
Query: 1172 EDGKQLPELYAALNA-----SNALGFM----QSSVANPDGVPASSSSQYDPVNDSMELIK 1324
+G+QLP+LY A N+ +N+ G + S+V QYDP+ DS+E K
Sbjct: 608 VNGQQLPQLYEAHNSHDGTFANSEGTVTVKPDSAVTIQPNQAVEPRKQYDPICDSVEPGK 667
Query: 1325 SVISEQPDEIALP------SQLPLTGEPSGDGPLGTHCKDVELDNNSHHSIEKHQFADCE 1486
++ P + L S L P+G G + E + S + A E
Sbjct: 668 LNVNTNPPDKKLELLSKSLSPSSLAAAPNG-GDFNKFFLEQESNEKSSQLNQPAPAASSE 726
Query: 1487 --NEEHGMVKAE------EKEEGQDGSKLSDSEGDDKADEKKKNSDGKSLRAFKFSLAEF 1642
NE +G+ E + + Q+ L +S+GD KADE +KN D K RAFKF+L EF
Sbjct: 727 ATNENNGVGSGEGNKVQEQDKTAQENGPLENSDGDGKADESRKNKDAKGNRAFKFALVEF 786
Query: 1643 VKELLKPTWKAGQINKEAHKTIXXXXXXXXMSSVQASHIPQTQEKIDNYLSAYKPKLSKL 1822
VK+LLKP WK GQI+K+A+K I ++ ++ IP TQEKI+ YLS KPKL+KL
Sbjct: 787 VKDLLKPAWKEGQISKDAYKNIVKKVVDKVTGTMHSASIPTTQEKIEQYLSVSKPKLTKL 846
Query: 1823 VQAYADKVQKE 1855
VQAY +K QK+
Sbjct: 847 VQAYVEKFQKD 857
Score = 66.2 bits (160), Expect = 3e-08
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +2
Query: 515 NDRVGRARVASFDRR-NHEPCRSGTIPCKFFASGNCRNGKACRFSHDDQTRGSFNNYEPN 691
NDR R R AS +RR E R+ IPCKFFA+GNC+NGK CRFSH DQT S + +
Sbjct: 263 NDR--RRRYASPERRAERETSRAADIPCKFFAAGNCQNGKYCRFSHHDQTLASPDKRSRD 320
Query: 692 DYRQGVDSRANMAPQREGSKWSGSASDLNLPKRHGNKNEGL 814
+ + +G KWS S + + K +KNE L
Sbjct: 321 VRWPPSQNSDELEKSWKGPKWSDSHTS-DSAKFSEDKNEKL 360
>ref|XP_003528041.1| PREDICTED: zinc finger CCCH domain-containing protein 38-like
[Glycine max]
Length = 828
Score = 152 bits (385), Expect = 3e-34
Identities = 107/300 (35%), Positives = 156/300 (52%), Gaps = 37/300 (12%)
Frame = +2
Query: 1064 KPDVLDT----VRSEATSSNQCLMSTEQFSDLTR---SLAQLLEDGKQLPELYAALNASN 1222
+P+++D V S + ++ EQ + LT SLA +L G+QLP+LYAALN+ +
Sbjct: 529 EPNIMDAGLLQVSSRDPPPTENVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHD 588
Query: 1223 ALGFMQSSVANPDGVPASSS-----------SQYDPVNDSMELIKSVISE---------- 1339
A G + A +P S++ QYDP+ DS+E +V S
Sbjct: 589 AKGTSSLAKAEVLAMPLSNTLIRPDPAVGLLKQYDPMCDSVEPKSAVASSGVTPAIPPCK 648
Query: 1340 --QPDEIALPSQLPLTGEPSGDGPLGTHCKDVELDNNSHHSIEKHQFADCENEEHGMVKA 1513
D + + SQ + G+ +++ + ++ ++ Q +++ V
Sbjct: 649 KVAEDVVEISSQSNTARQNCGNSSKSAGSEEL-VKSDPLILLQPGQNIGVNKDDNKEVLP 707
Query: 1514 EEKEEGQDGSK-------LSDSEGDDKADEKKKNSDGKSLRAFKFSLAEFVKELLKPTWK 1672
EE+++ +D K L + E D DE KK K RAFKF+L EFVKELLKPTWK
Sbjct: 708 EERQKSKDDPKNTKESGPLENMEQTDGPDEAKKTKGMKGSRAFKFALVEFVKELLKPTWK 767
Query: 1673 AGQINKEAHKTIXXXXXXXXMSSVQASHIPQTQEKIDNYLSAYKPKLSKLVQAYADKVQK 1852
GQI K+ +KTI S+Q ++IPQTQEKID+YLS KPKL+KLVQAY +KVQK
Sbjct: 768 DGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQK 827
Score = 69.7 bits (169), Expect = 3e-09
Identities = 77/291 (26%), Positives = 113/291 (38%), Gaps = 21/291 (7%)
Frame = +2
Query: 173 MSGSGQRRTSKWDLEEVSRHFPRDPIASGSERPSNRESQSRWHSREGN---------YRV 325
MSGSG++R+SKWDL + P D S S + + G+ YRV
Sbjct: 1 MSGSGKKRSSKWDLRDNPDFSPDDGKQLRSGWSSAGDKLKHFSGGRGSNKDNIMNKDYRV 60
Query: 326 ARDSLDDTMEWDGEST----MSPGLDDWRQQKRKYSFEXXXXXXXXXXXXXXXXXXXXXX 493
LD TMEWD + + MSPGLD W+ ++++ +
Sbjct: 61 ----LDSTMEWDEDESYDHKMSPGLDAWKH--KRHNSQSPKNGWSRSVSRSSRSRSPPHG 114
Query: 494 XLERPGLNDRVGRARVASFDRRNHEPCRSGTIPCKFFASGNCRNGKACRFSHDDQTRGSF 673
G+NDR R R T PC+ FA+G CR G C F HD+Q
Sbjct: 115 FRWDSGVNDR-SRMRAGG-----------STQPCRDFAAGKCRRGSHCHFLHDNQ----- 157
Query: 674 NNYE---PNDYRQGVDSRANMAPQREGSKWS--GSASD---LNLPKRHGNKNEGLGEQRA 829
N+E + YR+ D + REG +S SD +N PK G G +
Sbjct: 158 -NHEDGWEDKYRE--DGAPRYSAPREGRDYSLKSGRSDEACINFPK--GRCRMGASCKFV 212
Query: 830 MRSSVDASAPRDNRFMAHRMDIDEATKNNQSDDFRLTTHSSSGMGASKSRG 982
++ D + ++ +D T+ + D + G G +RG
Sbjct: 213 HHNNSDGHS---------KVSVDGLTREREIDRRHRDSSFEQGSGHGPNRG 254
>ref|XP_002310510.1| predicted protein [Populus trichocarpa] gi|222853413|gb|EEE90960.1|
predicted protein [Populus trichocarpa]
Length = 934
Score = 150 bits (379), Expect = 1e-33
Identities = 100/251 (39%), Positives = 135/251 (53%), Gaps = 16/251 (6%)
Frame = +2
Query: 1133 QFSDLTRSLAQLLEDGKQLPELYAALNASNALGFMQSSVANPDG-VPASSSSQYDPVNDS 1309
Q + L+ SLAQ L +G+QLP+LYAA N+ N PD V QYDP+ DS
Sbjct: 627 QLTSLSVSLAQFLANGQQLPQLYAARNSHNDTFANSEGTVKPDSMVTIQPRKQYDPICDS 686
Query: 1310 MELIKSVISEQPDEIAL--------PSQLPLTGEPSGDGPLGTHCKDVELDNNSHHSIEK 1465
+E K ++ P + L PS L G GD H + +D +S +
Sbjct: 687 VEPGKHHVNTNPPDQKLELLSKNLSPSSLS-AGLIGGDFNK-FHSEQEFIDKSSQLNQPG 744
Query: 1466 HQFADCENEEHGMVKAEEKEEGQDGSK-------LSDSEGDDKADEKKKNSDGKSLRAFK 1624
+ N+E+ V +EE + Q+ K L +S+GD KADE KKN D K RAFK
Sbjct: 745 PGVSSEVNKENNGVGSEESNKVQEQDKGAQENGPLENSDGDGKADESKKNKDAKGSRAFK 804
Query: 1625 FSLAEFVKELLKPTWKAGQINKEAHKTIXXXXXXXXMSSVQASHIPQTQEKIDNYLSAYK 1804
F+L EFVK+LLKP WK GQ++K+A+K I ++Q++ IP TQEKI+ YL K
Sbjct: 805 FALVEFVKDLLKPAWKEGQMSKDAYKNIVKKVVDKVTGTMQSASIPTTQEKIEQYLLVSK 864
Query: 1805 PKLSKLVQAYA 1837
PKL+KLVQ A
Sbjct: 865 PKLTKLVQVSA 875
Score = 67.8 bits (164), Expect = 1e-08
Identities = 47/106 (44%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Frame = +2
Query: 515 NDRVGRARVASFDRR-NHEPCRSGTIPCKFFASGNCRNGKACRFSHDDQT-----RGSFN 676
NDR R R AS +RR E R+ IPCKFFA+GNCRNGK CRFSH+DQT R
Sbjct: 287 NDR--RHRYASPERRAERETRRAADIPCKFFAAGNCRNGKYCRFSHNDQTPSPDKRSRDG 344
Query: 677 NYEPNDYRQGVDSRANMAPQREGSKWSGSASDLNLPKRHGNKNEGL 814
+ P+ V+ N KWS S + + K NKNE L
Sbjct: 345 RWPPSQNSDDVEKSWN------DPKWSESHTS-DAAKLSENKNEKL 383