BLASTX nr result
ID: Cnidium21_contig00015244
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00015244
(2019 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 692 0.0
dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 672 0.0
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2... 664 0.0
dbj|BAA88922.1| sigma factor [Nicotiana tabacum] 653 0.0
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-... 641 0.0
>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 508
Score = 692 bits (1787), Expect = 0.0
Identities = 363/507 (71%), Positives = 420/507 (82%), Gaps = 2/507 (0%)
Frame = +2
Query: 179 MAATAVIGLSAGKRLLSSSVYYSDYADKFCSSSDIGFTHHQVTSSKNVISAKKS-NYSSN 355
MA AVIGLSAGKRLLSS+ YYSD +K S+++ G TH+Q+TS+K +I AKKS NY +
Sbjct: 1 MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60
Query: 356 F-LSNRDTKSVKALKEHVDTASIPSNLEPWFQSSKNLEVEISDFDCSVDALLLLQKSMLE 532
F SNR+T+S+KALKEHVDTAS PS F++ ++E E SD D SV+ALLLLQKSMLE
Sbjct: 61 FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120
Query: 533 KQWNLSXXXXXXXXXXXXKSRKNIQVTGSGISAXXXXXXXXXXALNQRSPQIELNTRKQQ 712
KQWNLS KS+K I VT SG+SA L+Q ++ N KQ
Sbjct: 121 KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180
Query: 713 VSVISPKLLQNHMRGYVKGVLSEELLSHTEVVHLSKKIRTGLHIEDRKSRLEERLGREPS 892
S +SP+LLQN ++GYVKGV+SEELLSH EVV LS+ I+ GL +ED KSRL+ERLG +PS
Sbjct: 181 KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240
Query: 893 EEQLSASLNISRAELQSTLIECSLAREKLAMSNVRLVMSIAQRYENKGAEMADLVQGGLI 1072
+EQ++ SL ISRAELQS I CSLAREKLAMSNVRLVMSIAQRY+N GAEMADLVQGGLI
Sbjct: 241 DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
Query: 1073 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKTKL 1252
GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP +LHERLGLIRNAK +L
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360
Query: 1253 DERGITPSVANIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNR 1432
+E+G+TPS+ IAE LN+SQKKVRNATEAV++V+SLDREAFPSLNGLPG+T HSYIADN
Sbjct: 361 EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420
Query: 1433 LENIPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISKRIGLSRER 1612
LEN PWHGVD+WALKDEVNKL++ TL+ERE++IIRLYYGLDNE+LTWEDISKRIGLSRER
Sbjct: 421 LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480
Query: 1613 VRQVGLVALEKLKHAARRKKLEAMLVK 1693
VRQVGLVALEKLKHAAR+KKLEAMLVK
Sbjct: 481 VRQVGLVALEKLKHAARKKKLEAMLVK 507
>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 672 bits (1734), Expect = 0.0
Identities = 350/507 (69%), Positives = 410/507 (80%), Gaps = 1/507 (0%)
Frame = +2
Query: 179 MAATAVIGLSAGKRLLSSSVYYSDYADKFCSSSDIGFTHHQVTSSKNVISAKKSN-YSSN 355
M+ AVIGLSAGKRLLSSS YYSD +K +SD H V S KNVI+AKKS+ YS +
Sbjct: 2 MSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPS 61
Query: 356 FLSNRDTKSVKALKEHVDTASIPSNLEPWFQSSKNLEVEISDFDCSVDALLLLQKSMLEK 535
+S+R ++S K+LKEHVD + PS++ WF+ + L+ E D D SV+ LLLLQKSMLEK
Sbjct: 62 CVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLEK 121
Query: 536 QWNLSXXXXXXXXXXXXKSRKNIQVTGSGISAXXXXXXXXXXALNQRSPQIELNTRKQQV 715
QWNLS K K + +T SG SA L++ S + K
Sbjct: 122 QWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPLR 181
Query: 716 SVISPKLLQNHMRGYVKGVLSEELLSHTEVVHLSKKIRTGLHIEDRKSRLEERLGREPSE 895
S+I P+LLQN ++GYVKGV+SEELL+H EV+ LSKKI+ GL++E++KSRL+ERLG EPS+
Sbjct: 182 SIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSD 241
Query: 896 EQLSASLNISRAELQSTLIECSLAREKLAMSNVRLVMSIAQRYENKGAEMADLVQGGLIG 1075
+QL+ SL +SR +LQSTLIECSLARE+LAMSNVRLVMSIAQRY+N GAEMADLVQGGLIG
Sbjct: 242 DQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIG 301
Query: 1076 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKTKLD 1255
LLRGIEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPTYLHERL LIRNAK +L+
Sbjct: 302 LLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARLE 361
Query: 1256 ERGITPSVANIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNRL 1435
E+GITPSV NIA LNMSQKKVRNATEA +++YSLDREAFPSLNGLPG+TLHSYIADN L
Sbjct: 362 EKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNHL 421
Query: 1436 ENIPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISKRIGLSRERV 1615
EN PWHGVD WALKDEVN L+S+TLR+RER+IIRLYYGLDNE LTWEDISKRIGLSRERV
Sbjct: 422 ENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRERV 481
Query: 1616 RQVGLVALEKLKHAARRKKLEAMLVKQ 1696
RQVGLVALEKLKHAAR+++L+AML+KQ
Sbjct: 482 RQVGLVALEKLKHAARKRQLDAMLIKQ 508
>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 664 bits (1712), Expect = 0.0
Identities = 350/507 (69%), Positives = 408/507 (80%), Gaps = 2/507 (0%)
Frame = +2
Query: 179 MAATAVIGLSAGKRLLSSSVYYSDYADKFCSSSDIGFTHHQVTSSKNVISAKKS-NYSSN 355
MA AVIGLS+GKRLLSSS YYSD +K + +D G T++ ++KNVI AKKS NY +
Sbjct: 2 MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPS 61
Query: 356 F-LSNRDTKSVKALKEHVDTASIPSNLEPWFQSSKNLEVEISDFDCSVDALLLLQKSMLE 532
F SNR++ S+KALKEHVDTAS SN+ WF++ + E E S D SV+ALLLLQKSMLE
Sbjct: 62 FPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSMLE 121
Query: 533 KQWNLSXXXXXXXXXXXXKSRKNIQVTGSGISAXXXXXXXXXXALNQRSPQIELNTRKQQ 712
KQWNLS K+ K I VT SG+SA NQ + + K
Sbjct: 122 KQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKFL 181
Query: 713 VSVISPKLLQNHMRGYVKGVLSEELLSHTEVVHLSKKIRTGLHIEDRKSRLEERLGREPS 892
SV SP LLQN ++GYVKGV+S+E+L HTEVV LS+ IR GL ED KSRL+ERLG EPS
Sbjct: 182 RSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPS 241
Query: 893 EEQLSASLNISRAELQSTLIECSLAREKLAMSNVRLVMSIAQRYENKGAEMADLVQGGLI 1072
+EQ++ SL ISRA+LQS LI+CSLAREKLAMSNVRLVMSIAQ+Y+N GAEMADLVQGGLI
Sbjct: 242 DEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLI 301
Query: 1073 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKTKL 1252
GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP +LHERLGLIRNAK +L
Sbjct: 302 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIRL 361
Query: 1253 DERGITPSVANIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNR 1432
+E+G+TPS+ IAE LNMSQ+KVRNATEA+++V+SLDREAFPSLNGLPG+T HSYIADNR
Sbjct: 362 EEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 421
Query: 1433 LENIPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISKRIGLSRER 1612
EN PWHGVDEWALK+EVNKL+ +TL+ERE++IIRLY+GLD E LTWEDISKR+GLSRER
Sbjct: 422 PENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRER 481
Query: 1613 VRQVGLVALEKLKHAARRKKLEAMLVK 1693
VRQVGLVALEKLKHAAR++ EAMLVK
Sbjct: 482 VRQVGLVALEKLKHAARKRNTEAMLVK 508
>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 653 bits (1684), Expect = 0.0
Identities = 347/503 (68%), Positives = 402/503 (79%), Gaps = 2/503 (0%)
Frame = +2
Query: 191 AVIGLSAGKRLLSSSVYYSDYADKFCSSSDIGFTHHQVTSSKNVISAKKS-NYSSNFLSN 367
A+IGLSAG R+LSSS YYS +KFC S D H S KNVI+AK S NYS +++SN
Sbjct: 3 AIIGLSAGNRILSSSFYYSVLTEKFCVS-DHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61
Query: 368 RDTKSVKALKEHVDTASI-PSNLEPWFQSSKNLEVEISDFDCSVDALLLLQKSMLEKQWN 544
R +SVKALKEHVD AS S+ EPW Q K L+ + SV+ LLLLQKSMLEKQWN
Sbjct: 62 RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWN 121
Query: 545 LSXXXXXXXXXXXXKSRKNIQVTGSGISAXXXXXXXXXXALNQRSPQIELNTRKQQVSVI 724
LS +K +Q+T SG SA L ++ ++ K+ SVI
Sbjct: 122 LSAEKAMTNEN---NCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSVI 178
Query: 725 SPKLLQNHMRGYVKGVLSEELLSHTEVVHLSKKIRTGLHIEDRKSRLEERLGREPSEEQL 904
P+LLQN +GY+ GV+ +ELL+HTEVV LSKKI+ GL++E++KSRL+ERLG EPS++QL
Sbjct: 179 GPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQL 238
Query: 905 SASLNISRAELQSTLIECSLAREKLAMSNVRLVMSIAQRYENKGAEMADLVQGGLIGLLR 1084
+ SL ISRA+L+STLIECSLAREKLAMSNVRLVMSIAQRY+ G EMADL+QGGLIGLLR
Sbjct: 239 AISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLR 298
Query: 1085 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAKTKLDERG 1264
GIEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP +LHERL LIRNAK KL E G
Sbjct: 299 GIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKENG 358
Query: 1265 ITPSVANIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIADNRLENI 1444
ITPS+ IAECLNMSQKKVRNATEA ++V+SLDREAFPSLNGLPG+TLHSYIADNRLENI
Sbjct: 359 ITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENI 418
Query: 1445 PWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISKRIGLSRERVRQV 1624
PWHGVDEW LKDEVN L+S+TLRERER+I+RLYYGLDNE LTWEDIS+RIGLSRERVRQV
Sbjct: 419 PWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVRQV 478
Query: 1625 GLVALEKLKHAARRKKLEAMLVK 1693
GLVALEKLKHAAR+++L+AMLVK
Sbjct: 479 GLVALEKLKHAARKRRLDAMLVK 501
>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 641 bits (1654), Expect = 0.0
Identities = 343/510 (67%), Positives = 409/510 (80%), Gaps = 5/510 (0%)
Frame = +2
Query: 179 MAATAVIGLSAGKRLLSSSVYYSDYADKFCSSSDIGFTHHQVTSSKNVISAKKS-NYSSN 355
MA AVIGLS GKRLLSSS +YSD +K SD G TH+Q+ +K++I AKKS NY+
Sbjct: 1 MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60
Query: 356 F-LSNRDTKSVKALKEHVDTASIPSNLEPWFQS--SKNLEVEISDFDCSVDALLLLQKSM 526
F SN+ +S+KALKEHVD A P+ +PWFQS S +LEVE S+ SV+ALLLLQKSM
Sbjct: 61 FPASNQQNQSIKALKEHVDDA--PTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSM 118
Query: 527 LEKQWNLSXXXXXXXXXXXX-KSRKNIQVTGSGISAXXXXXXXXXXALNQRSPQIELNTR 703
LEKQWNLS K + + VT SG+SA +R I+
Sbjct: 119 LEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMN------TKRKTAIKTCGA 172
Query: 704 KQQVSVISPKLLQNHMRGYVKGVLSEELLSHTEVVHLSKKIRTGLHIEDRKSRLEERLGR 883
Q S ISP+LLQ+ ++GYVKG++SEELLSH EVV+LS+KI+ GL +E+ KSRL+E+LG
Sbjct: 173 MQLKSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGC 232
Query: 884 EPSEEQLSASLNISRAELQSTLIECSLAREKLAMSNVRLVMSIAQRYENKGAEMADLVQG 1063
EPS++Q++ SL ISR EL++ +IECSLAREKLAMSNVRLVMSIAQ+Y+N GAEM DLVQG
Sbjct: 233 EPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQG 292
Query: 1064 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLGLIRNAK 1243
GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP +LHERL LIRNAK
Sbjct: 293 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAK 352
Query: 1244 TKLDERGITPSVANIAECLNMSQKKVRNATEAVNRVYSLDREAFPSLNGLPGDTLHSYIA 1423
+L+ERGITP++ IA+ LNMSQKKVRNATEA++++ SLDREAFPSLNGL G+T HSYIA
Sbjct: 353 FRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIA 412
Query: 1424 DNRLENIPWHGVDEWALKDEVNKLMSTTLRERERDIIRLYYGLDNETLTWEDISKRIGLS 1603
DNR+ENIPW+GVDEWALKDEVN+L++ TL ERER+IIRLYYGL+ E LTWEDISKRIGLS
Sbjct: 413 DNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLS 472
Query: 1604 RERVRQVGLVALEKLKHAARRKKLEAMLVK 1693
RERVRQVGLVALEKLKHAAR++++EAML+K
Sbjct: 473 RERVRQVGLVALEKLKHAARKRQMEAMLLK 502