BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00015064
         (1074 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   155   2e-35
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...   153   6e-35
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   150   4e-34
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   147   3e-33
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   147   6e-33

>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  155 bits (392), Expect = 2e-35
 Identities = 102/366 (27%), Positives = 156/366 (42%), Gaps = 22/366 (6%)
 Frame = -3

Query: 1072 NSNNNKGINWLA*DRMCMPKSNGGLGFRSLHGFNMALLGKHVWNFIKNPDSLVAHVFKAL 893
            +S+ N+ ++W + D +C PKS GGLGFR LH FN +LL K  W       +L+  + +A 
Sbjct: 832  SSDTNRKMHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQAR 891

Query: 892  HFSGSSILQAPKGNGSSFIWAGV*EVKEQLRKGFRWILGDREEIRAFTDPWLIMKSDYCV 713
            +F  S +L+A +G   SF W  +   K  L +G +W +G  E IR + D W++ +  + V
Sbjct: 892  YFKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWILGEGAHMV 951

Query: 712  EDHHLNGIRDERVCSYFRPNTKEWGVHKVQ*TFHEVDIPLVLQTRIPHNEIRDRMAWTQT 533
                 +   D +VC         W +  VQ TF E +  LVL   +      D   W  +
Sbjct: 952  PTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPS 1011

Query: 532  SNGQYHVKSGYHYWFSRC-------------------ITWTVMLLPKVGIGCGISTFFTK 410
             NG + V+S   YW  R                      W +   PK+            
Sbjct: 1012 RNGIFSVRS--CYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLS----------- 1058

Query: 409  *FFLWRFCK-NIPVRNLLRSKGVPNPIICLMCEVDIEHLLHVFFDCTYVKQCWLKVGMVF 233
              FLWR CK ++ V+  L S+ +     C +C    E + H  FDCT+ +  W   G   
Sbjct: 1059 -HFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVSGFAS 1117

Query: 232  DMRE--VDSFPYRLLNKIGEEPHYTILKIATVLWGIWFVRNKKLWENKSITPDVIVDLSL 59
             M    + SF  RL              + + +W  WF RNK ++EN+     ++     
Sbjct: 1118 LMMNAPLSSFSERLEWLAKHATKEEFRTMCSFMWAGWFCRNKLIFENELSDAPLVAKRFS 1177

Query: 58   KQVLDW 41
            K V D+
Sbjct: 1178 KLVADY 1183


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score =  153 bits (387), Expect = 6e-35
 Identities = 95/354 (26%), Positives = 168/354 (47%), Gaps = 17/354 (4%)
 Frame = -3

Query: 1051 INWLA*DRMCMPKSNGGLGFRSLHGFNMALLGKHVWNFIKNPDSLVAHVFKALHFSGSSI 872
            I+WL+  R+ +PK  GG GF+ L  FN ALL K  W  ++   SL + VF++ +FS S  
Sbjct: 835  IHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDF 894

Query: 871  LQAPKGNGSSFIWAGV*EVKEQLRKGFRWILGDREEIRAFTDPWLIMKSDYCVEDHHLNG 692
            L A +G+  S+ W  +   +E L +G R ++G+ ++   +TD WL   S+    +     
Sbjct: 895  LSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFI 954

Query: 691  IRDERVCSYFRPNTKEWGVHKVQ*TFHEVDIPLVLQTRIPHNEIRDRMAWTQTSNGQYHV 512
              D +V     P ++ W ++ ++  F   D+ ++L+ R P     D   W  + NG Y V
Sbjct: 955  NVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQR-PLFFKEDSFCWLHSHNGLYSV 1013

Query: 511  KSGYHYWFSRCITWTVMLLPKVGIGCGISTFFTK*F----------FLWRFCKN-IPVRN 365
            K+GY +   +       L  +  +   +++ F K +          FLW+     IPV +
Sbjct: 1014 KTGYEFLSKQV---HHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVED 1070

Query: 364  LLRSKGVPNPIICLMCEVDIEHLLHVFFDCTYVKQCWLKVGMVFDMREVDSFPYRLLNKI 185
             LR++G+ +   CLMC+ + E + H+ F+C   +Q W    +     E  +  Y  ++++
Sbjct: 1071 RLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRL 1130

Query: 184  ------GEEPHYTILKIATVLWGIWFVRNKKLWENKSITPDVIVDLSLKQVLDW 41
                   + PH+       +LW +W  RN  L+E K      +VD + +   +W
Sbjct: 1131 IDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEW 1184


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  150 bits (380), Expect = 4e-34
 Identities = 94/359 (26%), Positives = 152/359 (42%), Gaps = 20/359 (5%)
 Frame = -3

Query: 1057 KGINWLA*DRMCMPKSNGGLGFRSLHGFNMALLGKHVWNFIKNPDSLVAHVFKALHFSGS 878
            + I W++  +MC  K +GGLGFR L  FN+ALL K  W F++NPDSLV  +F+A +F  S
Sbjct: 302  RSIRWMSWGKMCKQKKDGGLGFRKLXDFNLALLAKQGWRFLRNPDSLVTRIFQARYFRNS 361

Query: 877  SILQAPKGNGSSFIWAGV*EVKEQLRKGFRWILGDREEIRAFTDPWLIMKSDYCVEDHHL 698
            S L A  G+  S++W  +   +  L++G  W +    +++ + D WL   S+  +    +
Sbjct: 362  SFLNAELGSNPSYMWRSILAAQGLLKRGCYWSIASGTKVQVWGDSWLPDSSNRLIITPPV 421

Query: 697  NGIRDERVCSYFRPNTKEWGVHKVQ*TFHEVDIPLVLQTRIPHNEIRDRMAWTQTSNGQY 518
             G    +V          W    ++  F   D  L+L   +P +   D+++W+  + G+Y
Sbjct: 422  AGFDGIKVDELITEGL--WREDFIRDKFMARDADLILSIPLPMSSREDQISWSFDARGEY 479

Query: 517  HVKSGYHYWFSRCIT-------------------WTVMLLPKVGIGCGISTFFTK*FFLW 395
              +SGY     RC                     W V   PK+              F W
Sbjct: 480  TARSGYGAL--RCFRQSTALVASDVDSNFVWAQLWKVTAPPKILN------------FAW 525

Query: 394  RFCKN-IPVRNLLRSKGVPNPIICLMCEVDIEHLLHVFFDCTYVKQCWLKVGMVFDMREV 218
            R  +N +P R  L  + V  P+ C +C  ++E  LH   +C   +  W + G+       
Sbjct: 526  RAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNF 585

Query: 217  DSFPYRLLNKIGEEPHYTILKIATVLWGIWFVRNKKLWENKSITPDVIVDLSLKQVLDW 41
             SF   L             K   V WG+W+ RN  +W  +      +V+     +  W
Sbjct: 586  GSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESW 644


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score =  147 bits (372), Expect = 3e-33
 Identities = 111/372 (29%), Positives = 171/372 (45%), Gaps = 22/372 (5%)
 Frame = -3

Query: 1060 NKGINWLA*DRMCMPKSNGGLGFRSLHGFNMALLGKHVWNFIKNPDSLVAHVFKALHFSG 881
            + GI+W+A D++C P S+GGLGFR+L  FN+ LL K +W  I+ P+SL++ V +  +F  
Sbjct: 713  SNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRLIRFPNSLLSRVLRGRYFRY 772

Query: 880  SSILQAPKGNGSSFIWAGV*EVKEQLRKGFRWILGDREEIRAFTDPWL------IMKSDY 719
            S  +Q  K N  SF W  +   K  L  G R  +G     R + DPW+        KS  
Sbjct: 773  SDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSIL 832

Query: 718  CVEDHHLNGIRDERVCSYFRPNTKEWGVHKVQ*TFHEVDIPLVLQTRIPHNEIRDRMAWT 539
             + D HL       V     P TK+W + ++Q      DIPL+L  R       D  +W+
Sbjct: 833  NIRDTHL------YVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWS 886

Query: 538  QTSNGQYHVKSGYHYWFSRCITWTVMLLPKVGIGCG--------ISTFFTK*FFLWRFCK 383
             T +G Y VKSG  YW +R ++     LP  G            I T      F W+   
Sbjct: 887  FTKSGNYTVKSG--YWAARDLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCLS 944

Query: 382  N-IPVRNLLRSKGVPNPIICLMCEVDIEHLLHVFFDCTYVKQCW----LKVGMVFDMREV 218
              +     L S+ +    +C  C  + E + H+ F C   +Q W    +        R  
Sbjct: 945  GCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNS 1004

Query: 217  DSFPYRLLNKIGEEPHYT--ILKI-ATVLWGIWFVRNKKLWENKSITPDVIVDLSLKQVL 47
              + +  L   G+E      I++I   +LW IW  RN+ ++EN   +P VI+D ++++  
Sbjct: 1005 LFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEAN 1064

Query: 46   DWQIAM*KKKAS 11
             W+ A  K+ A+
Sbjct: 1065 VWKQANSKEVAT 1076


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  147 bits (370), Expect = 6e-33
 Identities = 102/375 (27%), Positives = 165/375 (44%), Gaps = 28/375 (7%)
 Frame = -3

Query: 1072 NSNNNKGINWLA*DRMCMPKSNGGLGFRSLHGFNMALLGKHVWNFIKNPDSLVAHVFKAL 893
            ++ +++G++W+A D++C  KS+GGLGFR++  FN ALL K +W  I  PDSL A VFK  
Sbjct: 613  SNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGR 672

Query: 892  HFSGSSILQAPKGNGSSFIWAGV*EVKEQLRKGFRWILGDREEIRAFTDPWLIMKSDYCV 713
            +F  S+ L + K    S+ W  +   +  + KG    +G    I  + DPW+   + +  
Sbjct: 673  YFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWI--PAQFPR 730

Query: 712  EDHHLNGIRDE--RVCSYFRPNTKEWGVHKVQ*TFHEVDIPLVLQTRIPHNEIRDRMAWT 539
               +   I D   +V S     +  W +  ++  F   D+PL+    I +  + D + W 
Sbjct: 731  PAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWH 790

Query: 538  QTSNGQYHVKSGYH----------------YWFSRCITWTVMLLPKVGIGCGISTFFTK* 407
             T  G Y VKSGYH                    +   W V   PK+             
Sbjct: 791  FTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLR------------ 838

Query: 406  FFLWRFCKN-IPVRNLLRSKGVPNPIICLMCEVDIEHLLHVFFDCTYVKQCWLKVGM--- 239
             FLW+     +PV   LR +G+     C+ C    E + H  F C   +Q W    +   
Sbjct: 839  HFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTA 898

Query: 238  --VFDMREV----DSFPYRLLNKIGEEPHYTILKIATVLWGIWFVRNKKLWENKSITPDV 77
              +F    +    D   +R+ + +   P+        ++W IW  RN+K++EN    P  
Sbjct: 899  PGIFPSNSIFTNLDHLFWRIPSGVDSAPY------PWIIWYIWKARNEKVFENVDKDPME 952

Query: 76   IVDLSLKQVLDWQIA 32
            I+ L++K+   WQ A
Sbjct: 953  ILLLAVKEAQSWQEA 967