BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00015062
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB78071.1| putative protein [Arabidopsis thaliana]                91   1e-16
dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hy...    83   2e-14
emb|CAB40066.1| putative protein [Arabidopsis thaliana] gi|72677...    82   3e-14
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...    82   5e-14
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf...    80   2e-13

>emb|CAB78071.1| putative protein [Arabidopsis thaliana]
          Length = 290

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/148 (29%), Positives = 77/148 (52%)
 Frame = +3

Query: 15  YSLELQLAEVSQGNQTISEFYTKIKTVWDIIDDISSLPVCGCGKCTCELGHXXXXXXXXX 194
           + +E +L  + QG+  +S +YT++ T+W+   +   LP+C CG+C C             
Sbjct: 124 FEIEQRLGSLQQGSMDVSTYYTELVTLWEEYKNYIELPLCTCGRCECNASALWEKMQQRS 183

Query: 195 XXXXXXMKLNDKYSAVRAHIMMMQPLPSVSQTYRLVAQEENHKDISQISTQTENMAFFAD 374
                 M LN+ Y A + HI+M++P+P++   + +VAQ+E  K I  ++ + +N+AF + 
Sbjct: 184 RVTKFLMGLNEAYEATQRHILMLKPIPTIEDVFNMVAQDERQKSIKPVA-KMDNVAFQSS 242

Query: 375 RKPQKSYNNYQKQLPSNNNFRPNSGAYT 458
              + +   Y     S NN  PN G Y+
Sbjct: 243 SHTEHNDIGYY----SGNNENPNVGYYS 266


>dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
          Length = 463

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
 Frame = +3

Query: 6   TESYSLELQLAEVSQGNQTISEFYTKIKTVWDIIDDISSLPVCGCGKCTCELGHXXXXXX 185
           T+ + L+ +L  VSQG   ++ ++ K+K +WD +  +++  VC C +C CE         
Sbjct: 142 TKMFQLQRELNNVSQGTNDVAAYFNKLKRIWDQMKVLNTFMVCSC-ECNCEAKGHNAKMQ 200

Query: 186 XXXXXXXXXMKLNDKYSAVRAHIMMMQPLPSVSQTYRLVAQEENHKDISQ-ISTQTENMA 362
                    M LN+ YS +R +I+MM+PLPS +Q Y +++ EE  + I+   +  T++ A
Sbjct: 201 EDQQLIQFLMGLNEVYSGIRGNILMMKPLPSTAQAYSIISHEETQRGIAAGNNVSTDSAA 260

Query: 363 FFADRKPQKSYNNYQKQLPSNNNFRPNSGAY 455
           F A  +   +  N       N N+      Y
Sbjct: 261 FNASTQNWNNQRNNYDNRARNQNYNNRRNNY 291


>emb|CAB40066.1| putative protein [Arabidopsis thaliana] gi|7267796|emb|CAB81199.1|
           putative protein [Arabidopsis thaliana]
          Length = 294

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 36/117 (30%), Positives = 67/117 (57%)
 Frame = +3

Query: 15  YSLELQLAEVSQGNQTISEFYTKIKTVWDIIDDISSLPVCGCGKCTCELGHXXXXXXXXX 194
           Y +E +L+++ QG+  IS +YT+++T+W+   +   LPVC CG+C C+            
Sbjct: 144 YDIEQRLSKIEQGSMDISAYYTELQTLWEEHKNYVDLPVCTCGRCECDAAVKWERLQQRS 203

Query: 195 XXXXXXMKLNDKYSAVRAHIMMMQPLPSVSQTYRLVAQEENHKDISQISTQTENMAF 365
                 M LN+ Y   R HI+M++P+ ++ + + +V Q+E  K I + + + +N+AF
Sbjct: 204 HVTKFLMGLNESYEQTRRHILMLKPIRTIEEAFNIVTQDERQKAI-RPTPKVDNVAF 259


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
           gi|7268152|emb|CAB78488.1| retrovirus-related like
           polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 38/143 (26%), Positives = 76/143 (53%)
 Frame = +3

Query: 15  YSLELQLAEVSQGNQTISEFYTKIKTVWDIIDDISSLPVCGCGKCTCELGHXXXXXXXXX 194
           + +E +L+++ QG+  IS +YT + T+W+   +   LPVC CG+C C+            
Sbjct: 143 FDIEQKLSKIEQGSMDISTYYTALLTLWEEHRNYVELPVCTCGRCECDAAVKWEHLQQRS 202

Query: 195 XXXXXXMKLNDKYSAVRAHIMMMQPLPSVSQTYRLVAQEENHKDISQISTQTENMAFFAD 374
                  +LN+ +   R HI+M++P+P++ + + +V Q+E  +++  + T+ +++AF   
Sbjct: 203 RVTKFLKELNEGFDQTRRHILMLKPIPTIKEAFNMVTQDERQRNVKPL-TRVDSVAFQNT 261

Query: 375 RKPQKSYNNYQKQLPSNNNFRPN 443
               +  N Y   + + N  RPN
Sbjct: 262 SMINEDENAY---VAAYNTVRPN 281


>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm,
           score: 11.19) [Arabidopsis thaliana]
          Length = 1633

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 33/105 (31%), Positives = 59/105 (56%)
 Frame = +3

Query: 15  YSLELQLAEVSQGNQTISEFYTKIKTVWDIIDDISSLPVCGCGKCTCELGHXXXXXXXXX 194
           Y +E +L+++ QG+  IS +YT+++T+W+   +   LPVC CG+C C+            
Sbjct: 144 YDIEQRLSKIEQGSMDISAYYTELQTLWEEHKNYVDLPVCTCGRCECDAAVKWERLQQRS 203

Query: 195 XXXXXXMKLNDKYSAVRAHIMMMQPLPSVSQTYRLVAQEENHKDI 329
                 M LN+ Y   R HI+M++P+ ++ + + +V Q+E  K I
Sbjct: 204 HVTKFLMGLNESYEQTRRHILMLKPIRTIEEAFNIVTQDERQKAI 248