BLASTX nr result

ID: Cnidium21_contig00014990 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00014990
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF43952.1|AC012188_29 Contains similarity to an Alfalfa nucl...   187   1e-45
ref|NP_172903.1| protein alfin-like 7 [Arabidopsis thaliana] gi|...   187   1e-45
ref|XP_002892811.1| PHD finger family protein [Arabidopsis lyrat...   186   2e-45
gb|AEF79998.1| PHD finger family protein [Corylus heterophylla]       181   4e-44
gb|AFY26897.1| PHD5 [Morella rubra]                                   181   7e-44

>gb|AAF43952.1|AC012188_29 Contains similarity to an Alfalfa nucleic acid binding protein from
           Medicago sativa gb|L07291.1 and contains a PHD-finger
           PF|00628 domain. ESTs gb|AI995787, gb|AA721930,
           gb|T42258 come from this gene [Arabidopsis thaliana]
          Length = 273

 Score =  187 bits (474), Expect = 1e-45
 Identities = 94/141 (66%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = +2

Query: 59  ALGINFARDGMQEKDWLSLVAVHSDSWLISVAFYFGARFGFGKNDRKRLFQMINELPTVY 238
           ALGINFARDGMQEKDW+SLVAVHSDSWLISVAFYFGARFGFGKN+RKRLFQMIN+LPT++
Sbjct: 96  ALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIF 155

Query: 239 EVVTCSAKQSKD-SARXXXXXXXXXXXXXRTFEPHPKA-KMAPPPNXXXXXXXXXXXXXQ 412
           EVVT +AKQSKD SA              R  E H KA KM+PPP              Q
Sbjct: 156 EVVTGNAKQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPRKEDESGDEDEDDEQ 215

Query: 413 GTTCGACGDNYAANEFWICCD 475
           G  CGACGDNY  +EFWICCD
Sbjct: 216 GAVCGACGDNYGGDEFWICCD 236


>ref|NP_172903.1| protein alfin-like 7 [Arabidopsis thaliana]
           gi|75245845|sp|Q8LA16.1|ALFL7_ARATH RecName: Full=PHD
           finger protein ALFIN-LIKE 7; Short=Protein AL7
           gi|21593666|gb|AAM65633.1| nucleic acid binding protein
           (alfin-1), putative [Arabidopsis thaliana]
           gi|30017229|gb|AAP12848.1| At1g14510 [Arabidopsis
           thaliana] gi|110736110|dbj|BAF00027.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332191052|gb|AEE29173.1| protein alfin-like 7
           [Arabidopsis thaliana]
          Length = 252

 Score =  187 bits (474), Expect = 1e-45
 Identities = 94/141 (66%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = +2

Query: 59  ALGINFARDGMQEKDWLSLVAVHSDSWLISVAFYFGARFGFGKNDRKRLFQMINELPTVY 238
           ALGINFARDGMQEKDW+SLVAVHSDSWLISVAFYFGARFGFGKN+RKRLFQMIN+LPT++
Sbjct: 75  ALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIF 134

Query: 239 EVVTCSAKQSKD-SARXXXXXXXXXXXXXRTFEPHPKA-KMAPPPNXXXXXXXXXXXXXQ 412
           EVVT +AKQSKD SA              R  E H KA KM+PPP              Q
Sbjct: 135 EVVTGNAKQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPRKEDESGDEDEDDEQ 194

Query: 413 GTTCGACGDNYAANEFWICCD 475
           G  CGACGDNY  +EFWICCD
Sbjct: 195 GAVCGACGDNYGGDEFWICCD 215


>ref|XP_002892811.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297338653|gb|EFH69070.1| PHD finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 252

 Score =  186 bits (471), Expect = 2e-45
 Identities = 93/141 (65%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = +2

Query: 59  ALGINFARDGMQEKDWLSLVAVHSDSWLISVAFYFGARFGFGKNDRKRLFQMINELPTVY 238
           ALGINFARDGMQEKDW+SLVAVHSDSWLISVAFYFGARFGFGKN+RKRLFQMIN+LPT++
Sbjct: 75  ALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIF 134

Query: 239 EVVTCSAKQSKD-SARXXXXXXXXXXXXXRTFEPHPKA-KMAPPPNXXXXXXXXXXXXXQ 412
           EVVT +AKQSKD SA              R  + H KA KM+PPP              Q
Sbjct: 135 EVVTGNAKQSKDQSANHNSSRSKSSSGKPRHSDTHTKASKMSPPPREEDESGDEEEDDEQ 194

Query: 413 GTTCGACGDNYAANEFWICCD 475
           G  CGACGDNY  +EFWICCD
Sbjct: 195 GAVCGACGDNYGGDEFWICCD 215


>gb|AEF79998.1| PHD finger family protein [Corylus heterophylla]
          Length = 253

 Score =  181 bits (460), Expect = 4e-44
 Identities = 91/144 (63%), Positives = 102/144 (70%), Gaps = 4/144 (2%)
 Frame = +2

Query: 59  ALGINFARDGMQEKDWLSLVAVHSDSWLISVAFYFGARFGFGKNDRKRLFQMINELPTVY 238
           ALGINFARDGMQEKDWLSLVAVHSDSWL++VAFYFGARFGFGKN+RKRLFQMIN+LPT++
Sbjct: 75  ALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIF 134

Query: 239 EVVTCSAKQSKD--SARXXXXXXXXXXXXXRTFEPHPK-AKMAPPP-NXXXXXXXXXXXX 406
           EVVT + KQSKD  +               R  EP PK  KM+PPP              
Sbjct: 135 EVVTGNVKQSKDQSATHNSSKSKLSGKTQSRQSEPQPKGVKMSPPPKEEDESGEEDEEDD 194

Query: 407 XQGTTCGACGDNYAANEFWICCDV 478
            QG TCGACGDNY  +EFWICCD+
Sbjct: 195 EQGATCGACGDNYGTDEFWICCDI 218


>gb|AFY26897.1| PHD5 [Morella rubra]
          Length = 252

 Score =  181 bits (458), Expect = 7e-44
 Identities = 93/143 (65%), Positives = 101/143 (70%), Gaps = 3/143 (2%)
 Frame = +2

Query: 59  ALGINFARDGMQEKDWLSLVAVHSDSWLISVAFYFGARFGFGKNDRKRLFQMINELPTVY 238
           ALGINFARDGMQEKDWLSLVAVHSDSWL++VAFYFGARFGFGKN+RKRLFQMINELPT++
Sbjct: 75  ALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIF 134

Query: 239 EVVTCSAKQSKD-SARXXXXXXXXXXXXXRTFEPHPK-AKMAPPP-NXXXXXXXXXXXXX 409
           EVVT + KQ KD SA              R  EP  K  KM+PPP               
Sbjct: 135 EVVTGNVKQPKDQSATHNSSKSKSSGKASRQTEPQAKGVKMSPPPKEEDESGEEEEEDDE 194

Query: 410 QGTTCGACGDNYAANEFWICCDV 478
           QG TCGACGDNY  +EFWICCDV
Sbjct: 195 QGATCGACGDNYGTDEFWICCDV 217


Top