BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00014647
         (1408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   583   e-164
ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-li...   574   e-161
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   573   e-161
ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|2...   571   e-160
ref|XP_003602039.1| Replication factor C subunit [Medicago trunc...   567   e-159

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  583 bits (1503), Expect = e-164
 Identities = 295/335 (88%), Positives = 318/335 (94%)
 Frame = +1

Query: 100  ITTGNPRHVKSTPWVEKYRPQSLADVAAHRDIVDTIDRLTSEKKLPHLLLYGPPGTGKTS 279
            +  G P   K+TPWVEKYRPQSLADVAAHRDIVDTIDRLTSE +LPHLLLYGPPGTGKTS
Sbjct: 26   VVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTS 85

Query: 280  TILAVARKIFGVQMHNMVLELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDE 459
            TILAVARK++G Q HNM+LELNASDDRGIDVVRQQIQDFASTQSFSFGAK+SVKLVLLDE
Sbjct: 86   TILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDE 145

Query: 460  ADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAIHVSERL 639
            ADAMTKDAQFALRRVIEKYTK+TRFALICNHVNKIIPALQSRCTRFRFAPLDA+HV+ERL
Sbjct: 146  ADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERL 205

Query: 640  KHVIAAEGLDVTDSGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 819
            KHVI AE LDV++SGLAALVRL +GDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD
Sbjct: 206  KHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKD 265

Query: 820  IEKIAHWLLNESFANSFKQISEIKTRKGLALVDIVREVTMFVFKIRMPSGVRVGLINDLA 999
            IE+I++WLLNESFA SF +ISE+K RKGLALVD+VREVTMFVFKI+MPS VRV LINDLA
Sbjct: 266  IEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLA 325

Query: 1000 DIEYRLSFGCSDKLQLGSLIATFTRARAALVASAK 1104
            DIEYRLSFGC+DKLQLGSLIA+FTRARAALVA+AK
Sbjct: 326  DIEYRLSFGCNDKLQLGSLIASFTRARAALVAAAK 360


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 361

 Score =  574 bits (1480), Expect = e-161
 Identities = 297/360 (82%), Positives = 321/360 (89%), Gaps = 12/360 (3%)
 Frame = +1

Query: 58   MAGETCPMETDD-----------VVITTGNPRHV-KSTPWVEKYRPQSLADVAAHRDIVD 201
            MA  T PM+ DD            V+  GNP    K+ PWVEKYRPQSL DVAAHRDIVD
Sbjct: 1    MAQTTHPMDIDDHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVD 60

Query: 202  TIDRLTSEKKLPHLLLYGPPGTGKTSTILAVARKIFGVQMHNMVLELNASDDRGIDVVRQ 381
            TIDRLT+E +LPHLLLYGPPGTGKTSTILAVARK++G Q  NM+LELNASDDRGIDVVRQ
Sbjct: 61   TIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQ 120

Query: 382  QIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNK 561
            QIQDFASTQS SFG K+SVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNK
Sbjct: 121  QIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNK 180

Query: 562  IIPALQSRCTRFRFAPLDAIHVSERLKHVIAAEGLDVTDSGLAALVRLCNGDMRKALNIL 741
            IIPALQSRCTRFRFAPLDA+HV+ERLKHVI AEGLDV DSGLAA VRL NGDMRKALNIL
Sbjct: 181  IIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNIL 240

Query: 742  QSTHMASQQITEEAVYLCTGNPLPKDIEKIAHWLLNESFANSFKQISEIKTRKGLALVDI 921
            QSTHMASQQITEEAVYLCTGNPLPKDIE I++WLLNE FA+SFK+I E+KTRKGLAL+DI
Sbjct: 241  QSTHMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALIDI 300

Query: 922  VREVTMFVFKIRMPSGVRVGLINDLADIEYRLSFGCSDKLQLGSLIATFTRARAALVASA 1101
            VREVTMFVFKI+MPS VRV L+NDLADIEYRLSFGC+DKLQLGS+IA+FTRAR+ALVA+A
Sbjct: 301  VREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAA 360


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  573 bits (1476), Expect = e-161
 Identities = 288/326 (88%), Positives = 314/326 (96%)
 Frame = +1

Query: 127  KSTPWVEKYRPQSLADVAAHRDIVDTIDRLTSEKKLPHLLLYGPPGTGKTSTILAVARKI 306
            K+TPWVEKYRPQSLADVAAHRDIVDTIDRLT+E +LPHLLLYGPPGTGKTSTILAVARK+
Sbjct: 35   KATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 94

Query: 307  FGVQMHNMVLELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQ 486
            +GVQ HNM+LELNASDDRGIDVVRQQIQDFASTQSFSF AK++VKLVLLDEADAMTKDAQ
Sbjct: 95   YGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQ 154

Query: 487  FALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAIHVSERLKHVIAAEGL 666
            FALRRVIEKYTK+TRFALICNHVNKIIPALQSRCTRFRFAPLD IHV++RLKHVI AEGL
Sbjct: 155  FALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGL 214

Query: 667  DVTDSGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEKIAHWLL 846
            DV + GLAA+VRL NGDMRKALNILQSTHMASQQITEEAV+LCTGNPLPKDI++I++WLL
Sbjct: 215  DVPEPGLAAVVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLL 274

Query: 847  NESFANSFKQISEIKTRKGLALVDIVREVTMFVFKIRMPSGVRVGLINDLADIEYRLSFG 1026
            NESFA SFK+ISEIKT+KGLALVDIVREVTMFVFKI+MPS VRV LIND+ADIEYRLSFG
Sbjct: 275  NESFAESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFG 334

Query: 1027 CSDKLQLGSLIATFTRARAALVASAK 1104
            CSDKLQLGSL+A+FT AR+ALVA+AK
Sbjct: 335  CSDKLQLGSLVASFTWARSALVAAAK 360


>ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|222843952|gb|EEE81499.1|
            predicted protein [Populus trichocarpa]
          Length = 363

 Score =  571 bits (1472), Expect = e-160
 Identities = 288/335 (85%), Positives = 311/335 (92%)
 Frame = +1

Query: 97   VITTGNPRHVKSTPWVEKYRPQSLADVAAHRDIVDTIDRLTSEKKLPHLLLYGPPGTGKT 276
            V+    P   K+TPWVEKYRPQSLADVAAHRDI+DTIDRLTSE +LPHLLLYGPPGTGKT
Sbjct: 28   VVVPATPPGGKATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPGTGKT 87

Query: 277  STILAVARKIFGVQMHNMVLELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLD 456
            STILAVARK++G Q HNM+LELNASDDRGIDVVR+QIQDFASTQSFSFGAKASVKLVLLD
Sbjct: 88   STILAVARKLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLD 147

Query: 457  EADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAIHVSER 636
            EADAMTKDAQFALRRVIEKYTK+TRFALICNHVNKIIPALQSRCTRFRFAPLD +HV ER
Sbjct: 148  EADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGER 207

Query: 637  LKHVIAAEGLDVTDSGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPK 816
            LKHVI AEGLDV +SGL AL  L NGDMRKALNILQSTHMASQQITEE VYLCTGNPLP+
Sbjct: 208  LKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTHMASQQITEETVYLCTGNPLPQ 267

Query: 817  DIEKIAHWLLNESFANSFKQISEIKTRKGLALVDIVREVTMFVFKIRMPSGVRVGLINDL 996
            D+++I HWLLNESFA S+K+ISEIKTRKGLALVDIVREVTMFVFKI+M S +RV LINDL
Sbjct: 268  DVQQITHWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDL 327

Query: 997  ADIEYRLSFGCSDKLQLGSLIATFTRARAALVASA 1101
            ADIEYRLSFGC+DKLQLGSLIA+FTRAR+ALVA+A
Sbjct: 328  ADIEYRLSFGCNDKLQLGSLIASFTRARSALVAAA 362


>ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
            gi|355491087|gb|AES72290.1| Replication factor C subunit
            [Medicago truncatula]
          Length = 355

 Score =  567 bits (1462), Expect = e-159
 Identities = 291/354 (82%), Positives = 319/354 (90%), Gaps = 6/354 (1%)
 Frame = +1

Query: 58   MAGETCPMETD-----DVVITTGNPRHV-KSTPWVEKYRPQSLADVAAHRDIVDTIDRLT 219
            MA ET  M+ D       VI  GNP    K++ WVEKYRPQSL DVAAHRDIVDTIDRLT
Sbjct: 1    MAEETYAMDIDVTDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLT 60

Query: 220  SEKKLPHLLLYGPPGTGKTSTILAVARKIFGVQMHNMVLELNASDDRGIDVVRQQIQDFA 399
            +E +LPHLLLYGPPGTGKTSTILAVARK++G Q HNM+LELNASDDRGIDVVRQQIQDFA
Sbjct: 61   TENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFA 120

Query: 400  STQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQ 579
            STQS SFG K SVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQ
Sbjct: 121  STQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQ 180

Query: 580  SRCTRFRFAPLDAIHVSERLKHVIAAEGLDVTDSGLAALVRLCNGDMRKALNILQSTHMA 759
            SRCTRFRFAPLDA+HV+ERLKHVI AE LDV DSGL+ALVRL NGDMRKALNILQSTHMA
Sbjct: 181  SRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMA 240

Query: 760  SQQITEEAVYLCTGNPLPKDIEKIAHWLLNESFANSFKQISEIKTRKGLALVDIVREVTM 939
            SQQITEEAVYLCTGNPLPKDIE+I++WLLNE ++ SFK+I ++KTRKGLAL+DIVREVTM
Sbjct: 241  SQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTM 300

Query: 940  FVFKIRMPSGVRVGLINDLADIEYRLSFGCSDKLQLGSLIATFTRARAALVASA 1101
            FVFKI MPS VRV L+NDLADIEYRLSFGC+DKLQLGS++A+FTRAR+A+VA+A
Sbjct: 301  FVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTRARSAMVAAA 354