BLASTX nr result

ID: Cnidium21_contig00014164 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00014164
         (1881 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   725   0.0  
ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|2...   717   0.0  
ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   715   0.0  
ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana] gi|334302...   672   0.0  
ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arab...   671   0.0  

>ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
            gi|297740757|emb|CBI30939.3| unnamed protein product
            [Vitis vinifera]
          Length = 516

 Score =  725 bits (1872), Expect = 0.0
 Identities = 367/506 (72%), Positives = 415/506 (82%)
 Frame = +2

Query: 50   EEEKKNNIPVLPWMRSPVDVDSIPKCPLDEVPLLDSKLTAALQTSGIASLFPVQLAVWQE 229
            E ++K N+PVLPWMRSP+DV    +CPL   P LD +L  AL+  G +SLFPVQ+AVWQE
Sbjct: 3    EAKQKKNVPVLPWMRSPIDVSLFEECPLHLFPCLDPRLEVALKNMGFSSLFPVQVAVWQE 62

Query: 230  TIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRSVKYLRALVVLPTRDLALQVKEVF 409
            T+GPG+FERDLCINSPTGSGKTLAYALPIV +LS+R+VK LRALVVLPTRDLALQVKEVF
Sbjct: 63   TVGPGAFERDLCINSPTGSGKTLAYALPIVNVLSSRAVKCLRALVVLPTRDLALQVKEVF 122

Query: 410  NTIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDFSEELQSSVDILVATPG 589
              IAPAVGLSVGLAVGQ+SIADEISELIKRPKLEAGICYDPED S ELQSSVDILVATPG
Sbjct: 123  AAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDISLELQSSVDILVATPG 182

Query: 590  RLMDHINNTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLQLTRSIDGSLFPHAKIFLP 769
            RLMDHIN TKGFTL+HL YLVVDETDRLLREAYQSWLPTVLQLTRS D SLFP  K  LP
Sbjct: 183  RLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLTRSSDESLFPCGKTILP 242

Query: 770  TAFGSIKTTRRTGVERGFKGKPYPRLTKMILSATLTQDPSKLSQLELHHPLFLTSGQMRY 949
            + FGS+ T RR GVERGFKG+ YPRL K++LSATLTQDPSKL+ L+LHHPL LT+GQ RY
Sbjct: 243  STFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLALLDLHHPLLLTAGQRRY 302

Query: 950  QFPEQMQLLKVICEPNCKPLYLVALLQSLHGEKSIVFTSSVDSTHRLCALLKFFGDLNIK 1129
            Q PE+++  K+ICE   KPLYLVALL+ L GEK IVFTSSV+S HRLC LL FFGDL IK
Sbjct: 303  QLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQIK 362

Query: 1130 INEYSGVQRQAVRSKTLKAFRTGEVQVLVSSDAMTRGMDVEGVRNVINYDTPPYIKTFIH 1309
            I EYSG+Q Q VRSKTL+ FR G++QVL+SSD MTRGMDVEGVRNVINYD P +IKT+IH
Sbjct: 363  IGEYSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVRNVINYDVPKFIKTYIH 422

Query: 1310 XXXXXXXXXXXXXCFTLLHNDEDRRFKKILRKADNNSCSRHSVTPDSLEPLRSVYASALT 1489
                         CFTLL  DED+RFK++L+KAD++SC  HSV  +S+E L SVY SAL 
Sbjct: 423  RAGRTARAGQTGRCFTLLRKDEDKRFKQLLQKADSDSCPVHSVASNSIEALHSVYVSALE 482

Query: 1490 KLKESVESETYKKRKAGMRSSHMGKR 1567
            KLKE+V SET +KRK   +SS   KR
Sbjct: 483  KLKETVVSETTRKRKINFKSSGADKR 508


>ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|222848405|gb|EEE85952.1|
            predicted protein [Populus trichocarpa]
          Length = 518

 Score =  717 bits (1850), Expect = 0.0
 Identities = 361/510 (70%), Positives = 414/510 (81%)
 Frame = +2

Query: 35   MKEGHEEEKKNNIPVLPWMRSPVDVDSIPKCPLDEVPLLDSKLTAALQTSGIASLFPVQL 214
            M+E    ++  N+PVLPWMRSPVDV    + PLD +P LD +L  ALQ  G  +LFPVQ+
Sbjct: 1    MEESTIAKQNKNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQI 60

Query: 215  AVWQETIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRSVKYLRALVVLPTRDLALQ 394
            AVWQETIGPG+FERDLCINSPTGSGKTLAYALPIVQ+LSTR+VK LRALVVLPTRDLALQ
Sbjct: 61   AVWQETIGPGAFERDLCINSPTGSGKTLAYALPIVQLLSTRAVKCLRALVVLPTRDLALQ 120

Query: 395  VKEVFNTIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDFSEELQSSVDIL 574
            VK+VF  IAPA+GLSVGLAVGQSSIADEISELIK+P+ EAGICYDP+D  +ELQSSVDIL
Sbjct: 121  VKQVFAAIAPAMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQELQSSVDIL 180

Query: 575  VATPGRLMDHINNTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLQLTRSIDGSLFPHA 754
            VATPGRLMDHI  TKGFTLEHLCYLVVDETDRLLRE+YQSWLPTVL+LTR  D SL P  
Sbjct: 181  VATPGRLMDHITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLTRPYDESLVPGV 240

Query: 755  KIFLPTAFGSIKTTRRTGVERGFKGKPYPRLTKMILSATLTQDPSKLSQLELHHPLFLTS 934
              FLP A GS+KT RR GVERGFKGK YPRL KM+LSATLTQDPSKL+QL LHHPLFLT+
Sbjct: 241  NNFLPCASGSLKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNLHHPLFLTT 300

Query: 935  GQMRYQFPEQMQLLKVICEPNCKPLYLVALLQSLHGEKSIVFTSSVDSTHRLCALLKFFG 1114
            GQ RYQ PE+++  K+IC    KPLYLVA+LQ L GEK IVFTSSV+STHRLC LL FFG
Sbjct: 301  GQRRYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFG 360

Query: 1115 DLNIKINEYSGVQRQAVRSKTLKAFRTGEVQVLVSSDAMTRGMDVEGVRNVINYDTPPYI 1294
            DL +KI EYSG+QRQ+VRSKTLKAFR GE+QVLVSSDAMTRGMD+EGVRN+INYD P Y+
Sbjct: 361  DLKVKIKEYSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDMPAYV 420

Query: 1295 KTFIHXXXXXXXXXXXXXCFTLLHNDEDRRFKKILRKADNNSCSRHSVTPDSLEPLRSVY 1474
            KT++H             C TLL   E +RFKK+L+KADN+SC  +S+   S++ L   Y
Sbjct: 421  KTYVHRAGRTARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIPSSSVKSLHPFY 480

Query: 1475 ASALTKLKESVESETYKKRKAGMRSSHMGK 1564
             SAL KLKE+V+SET +K K G++ S + K
Sbjct: 481  LSALEKLKETVQSETSRKGKVGIKFSRVSK 510


>ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
            sativus] gi|449490565|ref|XP_004158642.1| PREDICTED:
            DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
            sativus]
          Length = 517

 Score =  715 bits (1845), Expect = 0.0
 Identities = 367/506 (72%), Positives = 419/506 (82%)
 Frame = +2

Query: 50   EEEKKNNIPVLPWMRSPVDVDSIPKCPLDEVPLLDSKLTAALQTSGIASLFPVQLAVWQE 229
            +++K+  IPVLPWMRSPVDV  I +CPL+ +P+LD +L AALQ  GI+SLFPVQLAVWQE
Sbjct: 3    DKQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQE 62

Query: 230  TIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRSVKYLRALVVLPTRDLALQVKEVF 409
             IGPGSF+RDLCINSPTGSGKTLAYALPIVQMLS+R+VK LRALVVLPTRDLALQVKEVF
Sbjct: 63   AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVF 122

Query: 410  NTIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDFSEELQSSVDILVATPG 589
            + IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP+DF  ELQSSVDILVATPG
Sbjct: 123  SAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPG 182

Query: 590  RLMDHINNTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLQLTRSIDGSLFPHAKIFLP 769
            RLMDHIN TKGFTL+HL YLV+DETDRLLREAYQSWLPTVLQLT + D S+   + I  P
Sbjct: 183  RLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNP 242

Query: 770  TAFGSIKTTRRTGVERGFKGKPYPRLTKMILSATLTQDPSKLSQLELHHPLFLTSGQMRY 949
             + GS+KT RR GVERGFKGKPYPRL KM+LSATLTQDP KL+QL+LHHPLFLT+G+ RY
Sbjct: 243  CSDGSLKTIRRFGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRY 302

Query: 950  QFPEQMQLLKVICEPNCKPLYLVALLQSLHGEKSIVFTSSVDSTHRLCALLKFFGDLNIK 1129
            + PE+++   +ICE   KPLYLVALLQSL  EK IVFTSSV+STHRLC+LL FF DL +K
Sbjct: 303  KLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELK 362

Query: 1130 INEYSGVQRQAVRSKTLKAFRTGEVQVLVSSDAMTRGMDVEGVRNVINYDTPPYIKTFIH 1309
            I EYSG+QRQ++RSKTL AFR GE+QVLVSSDAMTRGMDVEGV+NVINYD P +IKT+IH
Sbjct: 363  IKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINYDMPAFIKTYIH 422

Query: 1310 XXXXXXXXXXXXXCFTLLHNDEDRRFKKILRKADNNSCSRHSVTPDSLEPLRSVYASALT 1489
                         CFTLL  DE +RFKK+L+KADN+SC  H++   S+E L+  Y SAL 
Sbjct: 423  RAGRTARAGQSGRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLPSSSIEFLQPTYVSALE 482

Query: 1490 KLKESVESETYKKRKAGMRSSHMGKR 1567
            KLKE VESET +K      SS  GK+
Sbjct: 483  KLKEKVESETSRKSTI-TSSSRAGKQ 507


>ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
            gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box
            ATP-dependent RNA helicase 1 gi|332658259|gb|AEE83659.1|
            RNA helicase 1 [Arabidopsis thaliana]
          Length = 522

 Score =  672 bits (1733), Expect = 0.0
 Identities = 335/499 (67%), Positives = 399/499 (79%)
 Frame = +2

Query: 50   EEEKKNNIPVLPWMRSPVDVDSIPKCPLDEVPLLDSKLTAALQTSGIASLFPVQLAVWQE 229
            +E+K     V+PWMR+PVDV ++  C LD +P L+ KL  AL+  GI+SLFPVQ+AVW E
Sbjct: 5    KEDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHE 64

Query: 230  TIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRSVKYLRALVVLPTRDLALQVKEVF 409
            TIGPG FERD+C+NSPTGSGKTL+YALPIVQ+L++R V+ LRALVVLPTRDLALQVK+VF
Sbjct: 65   TIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVF 124

Query: 410  NTIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDFSEELQSSVDILVATPG 589
            + IAPAVGLSVG AVGQSSIA EIS+LIK PKL+AGICYDP+D S+ L+S+VDILVATPG
Sbjct: 125  DAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPG 184

Query: 590  RLMDHINNTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLQLTRSIDGSLFPHAKIFLP 769
            RLMDHINNTKGFTLEHL YLVVDETDRLLREAYQSWLPTVLQLT++ D SLFP    F+P
Sbjct: 185  RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244

Query: 770  TAFGSIKTTRRTGVERGFKGKPYPRLTKMILSATLTQDPSKLSQLELHHPLFLTSGQMRY 949
            +AFGS++T RR  VERGFKGKPYPRL KM+LSATLTQDPSKL QL+LHHPLF+T+G  RY
Sbjct: 245  SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304

Query: 950  QFPEQMQLLKVICEPNCKPLYLVALLQSLHGEKSIVFTSSVDSTHRLCALLKFFGDLNIK 1129
            + PE+++ L++ICE   KP+YLVALL+S  GEK I+FTSSV++T RLC LL FFGD  IK
Sbjct: 305  RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364

Query: 1130 INEYSGVQRQAVRSKTLKAFRTGEVQVLVSSDAMTRGMDVEGVRNVINYDTPPYIKTFIH 1309
              EYSG   Q++RSK LKAFR G++QVLV+SDA+TRGMDV+GV NVINYD PP+ KTFIH
Sbjct: 365  AKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424

Query: 1310 XXXXXXXXXXXXXCFTLLHNDEDRRFKKILRKADNNSCSRHSVTPDSLEPLRSVYASALT 1489
                         CFTLL N E RRF K+L K  ++SC  + + P SL+ +R+ Y  AL 
Sbjct: 425  RAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALE 484

Query: 1490 KLKESVESETYKKRKAGMR 1546
            KLKE VESE  KK +   R
Sbjct: 485  KLKELVESEAPKKGRQAFR 503


>ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
            lyrata] gi|297316041|gb|EFH46464.1| hypothetical protein
            ARALYDRAFT_493299 [Arabidopsis lyrata subsp. lyrata]
          Length = 522

 Score =  671 bits (1730), Expect = 0.0
 Identities = 335/502 (66%), Positives = 399/502 (79%), Gaps = 1/502 (0%)
 Frame = +2

Query: 44   GHEEEKKNNIP-VLPWMRSPVDVDSIPKCPLDEVPLLDSKLTAALQTSGIASLFPVQLAV 220
            G ++E K  I  V+PWMR+PVDV ++  C L+ +P L+ KL  AL+  GI+SLFPVQ+AV
Sbjct: 2    GRDKEDKTEIDSVVPWMRAPVDVSNVENCALETLPCLNPKLKKALENMGISSLFPVQVAV 61

Query: 221  WQETIGPGSFERDLCINSPTGSGKTLAYALPIVQMLSTRSVKYLRALVVLPTRDLALQVK 400
            W ETIGPG FERD+C+NSPTGSGKTL+YALPIVQ+L++R V+ LRALVVLPTRDLALQVK
Sbjct: 62   WHETIGPGGFERDICVNSPTGSGKTLSYALPIVQILASRPVRCLRALVVLPTRDLALQVK 121

Query: 401  EVFNTIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDFSEELQSSVDILVA 580
            +VF+ IAP VGLSVG AVGQSSIA EIS+LIK PKL+AGICYDPED S+  +S+VDILVA
Sbjct: 122  DVFDAIAPTVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPEDLSQNFESAVDILVA 181

Query: 581  TPGRLMDHINNTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVLQLTRSIDGSLFPHAKI 760
            TPGRLMDHINNTKGFTLEHL YLVVDETDRLLREAYQSWLPTVLQLT++ D  LFP    
Sbjct: 182  TPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDGLFPSCTP 241

Query: 761  FLPTAFGSIKTTRRTGVERGFKGKPYPRLTKMILSATLTQDPSKLSQLELHHPLFLTSGQ 940
            F+P+AFGS++T RR  VERGFKGKPYPRL KM+LSATLTQDPSKL QL+LHHPLF+T+G 
Sbjct: 242  FVPSAFGSLRTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG 301

Query: 941  MRYQFPEQMQLLKVICEPNCKPLYLVALLQSLHGEKSIVFTSSVDSTHRLCALLKFFGDL 1120
             RY+ PE+++ L++ICE   KP+YLVALL+S  GEK I+FTSSV++T RLC LL FFGD 
Sbjct: 302  SRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDP 361

Query: 1121 NIKINEYSGVQRQAVRSKTLKAFRTGEVQVLVSSDAMTRGMDVEGVRNVINYDTPPYIKT 1300
             IK  EYSG   Q+VRSK LKAFR G++QVLV+SDA+TRGMDV+GV NVINYD PP+ KT
Sbjct: 362  KIKAKEYSGGLNQSVRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKT 421

Query: 1301 FIHXXXXXXXXXXXXXCFTLLHNDEDRRFKKILRKADNNSCSRHSVTPDSLEPLRSVYAS 1480
            FIH             CFTLL N E RRF K+L+K  ++SC  + + P SL+ +R+ Y  
Sbjct: 422  FIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATYTP 481

Query: 1481 ALTKLKESVESETYKKRKAGMR 1546
            AL KLKE VESE  KK +   R
Sbjct: 482  ALEKLKELVESEAPKKGRQAFR 503


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