BLASTX nr result
ID: Cnidium21_contig00014149
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00014149
(675 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531375.1| RNA and export factor binding protein, putat... 102 1e-48
ref|XP_003606654.1| THO complex subunit [Medicago truncatula] gi... 103 3e-48
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro... 99 8e-48
ref|XP_003539690.1| PREDICTED: RNA and export factor-binding pro... 101 1e-47
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera] 97 4e-47
>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
gi|223529035|gb|EEF31023.1| RNA and export factor
binding protein, putative [Ricinus communis]
Length = 247
Score = 102 bits (253), Expect(3) = 1e-48
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +1
Query: 427 GRSKGTAEVVFSRRQDALSAVVKYNNVQLDGKPMKVEIVGTNIVTPAAGPPFANSNVSNF 606
GRSKGTAEVVFSRR DAL+AV +YNNVQLDGKPMK+EIVGTNI TPAA P AN N N
Sbjct: 128 GRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAA-TPAANGNFGNS 186
Query: 607 NGVPRSNQ 630
NG PR Q
Sbjct: 187 NGAPRGGQ 194
Score = 84.0 bits (206), Expect(3) = 1e-48
Identities = 39/46 (84%), Positives = 43/46 (93%)
Frame = +2
Query: 221 ETGTKLYISNLDYGVSQEDIKELFAEMGDLKRSVVHYDRSGRSKGT 358
ETGTKLYISNL+YGVS EDIKELF+E+GDLKR +HYDRSGRSKGT
Sbjct: 88 ETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT 133
Score = 54.3 bits (129), Expect(3) = 1e-48
Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 GPGPARRSNNRSSYRPAPY-SSKAPDSAWQHDMFSSDQAM 119
GPGP RR NNR + R APY ++KAP+S WQHDMF+ M
Sbjct: 32 GPGPTRRFNNRGTNRAAPYAAAKAPESTWQHDMFTDQGGM 71
>ref|XP_003606654.1| THO complex subunit [Medicago truncatula]
gi|355507709|gb|AES88851.1| THO complex subunit
[Medicago truncatula]
Length = 376
Score = 103 bits (256), Expect(3) = 3e-48
Identities = 50/68 (73%), Positives = 58/68 (85%)
Frame = +1
Query: 427 GRSKGTAEVVFSRRQDALSAVVKYNNVQLDGKPMKVEIVGTNIVTPAAGPPFANSNVSNF 606
GRSKGTAEVVFSRRQDA++AV +YNNVQLDGKPMK+EIVGTNI TP A P N+ + NF
Sbjct: 244 GRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAA-PVVNAPIGNF 302
Query: 607 NGVPRSNQ 630
NG+P+S Q
Sbjct: 303 NGIPQSGQ 310
Score = 84.7 bits (208), Expect(3) = 3e-48
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +2
Query: 221 ETGTKLYISNLDYGVSQEDIKELFAEMGDLKRSVVHYDRSGRSKGT 358
ETGTKLYISNLDYGVS +DIKELF+E+GDLKR VHYDRSGRSKGT
Sbjct: 204 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGT 249
Score = 51.2 bits (121), Expect(3) = 3e-48
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 GPGPARRSNNRSSYRPAPYS-SKAPDSAWQHDMFSSDQAMANQGY 134
GPGPARR NR+ R APYS +KAP++ WQHD++ +DQ +A Y
Sbjct: 149 GPGPARRILNRAGNRAAPYSAAKAPETTWQHDLY-ADQHVAAAAY 192
>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
gi|297746115|emb|CBI16171.3| unnamed protein product
[Vitis vinifera]
Length = 243
Score = 99.4 bits (246), Expect(3) = 8e-48
Identities = 50/68 (73%), Positives = 54/68 (79%)
Frame = +1
Query: 427 GRSKGTAEVVFSRRQDALSAVVKYNNVQLDGKPMKVEIVGTNIVTPAAGPPFANSNVSNF 606
GRSKGTAEVVFSRR DA++AV +YNNVQLDGKPMK+EIVGTNI TPAA PP N N
Sbjct: 124 GRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTFGNS 183
Query: 607 NGVPRSNQ 630
NG RS Q
Sbjct: 184 NGGLRSAQ 191
Score = 85.5 bits (210), Expect(3) = 8e-48
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +2
Query: 221 ETGTKLYISNLDYGVSQEDIKELFAEMGDLKRSVVHYDRSGRSKGT 358
ETGTKLYISNLDYGVS EDIKELF+E+GDLKR +HYDRSGRSKGT
Sbjct: 84 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT 129
Score = 52.8 bits (125), Expect(3) = 8e-48
Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 GPGPARRSNNRSSYRPAPYS-SKAPDSAWQHDMFSSDQAMA 122
GPGPARR NR + R PYS SKAP++ WQHDMF +DQA A
Sbjct: 33 GPGPARRLPNRGANRITPYSVSKAPETTWQHDMF-ADQAAA 72
>ref|XP_003539690.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine
max]
Length = 247
Score = 101 bits (252), Expect(3) = 1e-47
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = +1
Query: 427 GRSKGTAEVVFSRRQDALSAVVKYNNVQLDGKPMKVEIVGTNIVTPAAGPPFANSNVSNF 606
GRSKGTAEVVFSRR DA+SAV +YNNVQLDGKPMK+EIVGTNI TP P N + NF
Sbjct: 126 GRSKGTAEVVFSRRADAVSAVKRYNNVQLDGKPMKIEIVGTNISTPGVAPA-PNGAIGNF 184
Query: 607 NGVPRSNQ 630
NGVPRS Q
Sbjct: 185 NGVPRSGQ 192
Score = 87.0 bits (214), Expect(3) = 1e-47
Identities = 41/46 (89%), Positives = 43/46 (93%)
Frame = +2
Query: 221 ETGTKLYISNLDYGVSQEDIKELFAEMGDLKRSVVHYDRSGRSKGT 358
ETGTKLYISNLDYGVS +DIKELFAE+GDLKR VHYDRSGRSKGT
Sbjct: 86 ETGTKLYISNLDYGVSNDDIKELFAEVGDLKRHAVHYDRSGRSKGT 131
Score = 48.5 bits (114), Expect(3) = 1e-47
Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 GPGPARRSNNRSSYRPAPYS-SKAPDSAWQHDMFSSDQAMANQGY 134
G GP RR NR++ R APY+ +KAP++ WQHD++ +DQ +A GY
Sbjct: 32 GSGPTRRLPNRAANRAAPYAPAKAPEATWQHDLY-ADQHVAAAGY 75
>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
Length = 281
Score = 97.1 bits (240), Expect(3) = 4e-47
Identities = 47/62 (75%), Positives = 51/62 (82%)
Frame = +1
Query: 427 GRSKGTAEVVFSRRQDALSAVVKYNNVQLDGKPMKVEIVGTNIVTPAAGPPFANSNVSNF 606
GRSKGTAEVVFSRR DA++AV +YNNVQLDGKPMK+EIVGTNI TPAA PP N N
Sbjct: 124 GRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTFGNS 183
Query: 607 NG 612
NG
Sbjct: 184 NG 185
Score = 85.5 bits (210), Expect(3) = 4e-47
Identities = 40/46 (86%), Positives = 43/46 (93%)
Frame = +2
Query: 221 ETGTKLYISNLDYGVSQEDIKELFAEMGDLKRSVVHYDRSGRSKGT 358
ETGTKLYISNLDYGVS EDIKELF+E+GDLKR +HYDRSGRSKGT
Sbjct: 84 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT 129
Score = 52.8 bits (125), Expect(3) = 4e-47
Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 GPGPARRSNNRSSYRPAPYS-SKAPDSAWQHDMFSSDQAMA 122
GPGPARR NR + R PYS SKAP++ WQHDMF +DQA A
Sbjct: 33 GPGPARRLPNRGANRITPYSVSKAPETTWQHDMF-ADQAAA 72