BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00013906
         (1893 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              650   0.0  
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   650   0.0  
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   621   e-175
ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|2...   615   e-173
ref|XP_003554116.1| PREDICTED: general transcription factor IIH ...   611   e-172

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  650 bits (1677), Expect = 0.0
 Identities = 315/395 (79%), Positives = 343/395 (86%), Gaps = 3/395 (0%)
 Frame = -3

Query: 1843 AWERAYADERSWESLQEDESGLLRPIDNKTIQHAQYRRRLRTYSSS---ARIQKGLIRFL 1673
            AWERAYADERSWESLQEDESGLLRPIDNKTI HAQYRRR+R+  SS   ARIQKGLIR+L
Sbjct: 99   AWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYL 158

Query: 1672 LIVIDLSRAAGEMDFRPSRMVVVAKQVEAFIREFFDQNPLSQIGLITIKDGVAQYLTDLG 1493
             IV+DLSRAA EMDF+PSRM VVAK +EAFIREFFDQNPLSQIGL+TIKDG+AQ LTDLG
Sbjct: 159  YIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLG 218

Query: 1492 GSPESHINALMGKLGCSGDASLQNALDLVHEYLSPIPSYGHREALILYSALSTCDPGDIM 1313
            GSP+SH+ ALMGKL CSGD+SLQNALDLVH YL+ IPSYGHRE LILYSALSTCDPGDIM
Sbjct: 219  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 278

Query: 1312 ESIQRCKKAKIRCSIVGLSAEIFICKHICQETGGSYSVALDEAHLKELVLEHXXXXXXXX 1133
            E+IQ CKK+KIRCS++GLSAEIFIC+H+CQETGGSYSVALDE+H KEL+LEH        
Sbjct: 279  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 338

Query: 1132 XXXISNLIKMGFPQRAGEGVCSICSCHKEAKFGGGYTCPRCKARVCELPTECRICGLTLV 953
               I+NLIKMGFPQRA EGV SICSCHKEAK GGGYTCPRCKARVCELPTECRICGLTLV
Sbjct: 339  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 398

Query: 952  SSPHLARSYHHLFPITPFDDVPPSLPRNSHLLLPKSCFGCQQSLLGPANLPGPSVACPKC 773
            SSPHLARSYHHLFPI PFD+V  SL  N H    ++CFGCQ+SLL P N P   VACPKC
Sbjct: 399  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 458

Query: 772  KQYFCLDCDIYIHESLHNCPGCESFKQSKLDRGTE 668
            KQ+FCLDCDIYIHESLHNCPGCESF+ SK+   TE
Sbjct: 459  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 493


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  650 bits (1677), Expect = 0.0
 Identities = 315/395 (79%), Positives = 343/395 (86%), Gaps = 3/395 (0%)
 Frame = -3

Query: 1843 AWERAYADERSWESLQEDESGLLRPIDNKTIQHAQYRRRLRTYSSS---ARIQKGLIRFL 1673
            AWERAYADERSWESLQEDESGLLRPIDNKTI HAQYRRR+R+  SS   ARIQKGLIR+L
Sbjct: 38   AWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYL 97

Query: 1672 LIVIDLSRAAGEMDFRPSRMVVVAKQVEAFIREFFDQNPLSQIGLITIKDGVAQYLTDLG 1493
             IV+DLSRAA EMDF+PSRM VVAK +EAFIREFFDQNPLSQIGL+TIKDG+AQ LTDLG
Sbjct: 98   YIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLG 157

Query: 1492 GSPESHINALMGKLGCSGDASLQNALDLVHEYLSPIPSYGHREALILYSALSTCDPGDIM 1313
            GSP+SH+ ALMGKL CSGD+SLQNALDLVH YL+ IPSYGHRE LILYSALSTCDPGDIM
Sbjct: 158  GSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIM 217

Query: 1312 ESIQRCKKAKIRCSIVGLSAEIFICKHICQETGGSYSVALDEAHLKELVLEHXXXXXXXX 1133
            E+IQ CKK+KIRCS++GLSAEIFIC+H+CQETGGSYSVALDE+H KEL+LEH        
Sbjct: 218  ETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 277

Query: 1132 XXXISNLIKMGFPQRAGEGVCSICSCHKEAKFGGGYTCPRCKARVCELPTECRICGLTLV 953
               I+NLIKMGFPQRA EGV SICSCHKEAK GGGYTCPRCKARVCELPTECRICGLTLV
Sbjct: 278  EFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLV 337

Query: 952  SSPHLARSYHHLFPITPFDDVPPSLPRNSHLLLPKSCFGCQQSLLGPANLPGPSVACPKC 773
            SSPHLARSYHHLFPI PFD+V  SL  N H    ++CFGCQ+SLL P N P   VACPKC
Sbjct: 338  SSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKC 397

Query: 772  KQYFCLDCDIYIHESLHNCPGCESFKQSKLDRGTE 668
            KQ+FCLDCDIYIHESLHNCPGCESF+ SK+   TE
Sbjct: 398  KQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 432


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  621 bits (1601), Expect = e-175
 Identities = 296/397 (74%), Positives = 334/397 (84%), Gaps = 5/397 (1%)
 Frame = -3

Query: 1843 AWERAYADERSWESLQEDESGLLRPIDNKTIQHAQYRRRLRTYSS---SARIQKGLIRFL 1673
            AWER YAD+RSWE+LQEDESGLLRPIDNK I HAQYRRRLRT SS   +ARIQKGLIR+L
Sbjct: 27   AWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYL 86

Query: 1672 LIVIDLSRAAGEMDFRPSRMVVVAKQVEAFIREFFDQNPLSQIGLITIKDGVAQYLTDLG 1493
             IVID S+AA EMDFRPSRM VVAK V+AF+REFFDQNPLSQIGL+TIKDG A  LTDLG
Sbjct: 87   YIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLG 146

Query: 1492 GSPESHINALMGKLGCSGDASLQNALDLVHEYLSPIPSYGHREALILYSALSTCDPGDIM 1313
            GSPESH+ ALMGKL CSGDASLQN L+LVH YL+ IPSYGHRE L+LYSAL++CDPGDIM
Sbjct: 147  GSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIM 206

Query: 1312 ESIQRCKKAKIRCSIVGLSAEIFICKHICQETGGSYSVALDEAHLKELVLEHXXXXXXXX 1133
            E++Q+CK +KIRCS++GL+AEIFIC+H+CQETGGSYSVALDE+H KEL+LEH        
Sbjct: 207  ETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIA 266

Query: 1132 XXXISNLIKMGFPQRAGEGVCSICSCHKEAKFGGGYTCPRCKARVCELPTECRICGLTLV 953
               + NLIKMGFPQRA E   +ICSCHKEAK GGGYTCPRCKARVCELPTECRICGLTL+
Sbjct: 267  DSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLI 326

Query: 952  SSPHLARSYHHLFPITPFDDVPPSLPRNSHLLLPKSCFGCQQSLLGPA--NLPGPSVACP 779
            SSPHLARSYHHLFPI PFD+V   +  +    LPK CFGCQ+SL+ P+  N P   V+CP
Sbjct: 327  SSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCP 386

Query: 778  KCKQYFCLDCDIYIHESLHNCPGCESFKQSKLDRGTE 668
            KCKQ+FCLDCDIYIHESLHNCPGCESF++ KL    E
Sbjct: 387  KCKQHFCLDCDIYIHESLHNCPGCESFRRPKLATSDE 423


>ref|XP_002331276.1| predicted protein [Populus trichocarpa] gi|222873701|gb|EEF10832.1|
            predicted protein [Populus trichocarpa]
          Length = 412

 Score =  615 bits (1586), Expect = e-173
 Identities = 297/386 (76%), Positives = 326/386 (84%), Gaps = 3/386 (0%)
 Frame = -3

Query: 1837 ERAYADERSWESLQEDESGLLRPIDNKTIQHAQYRRRLR---TYSSSARIQKGLIRFLLI 1667
            ER Y+DERSWE+LQEDESGLLRP+DNK + HAQYRRRLR   T S+S RIQKGLIRFL I
Sbjct: 27   ERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLIRFLYI 86

Query: 1666 VIDLSRAAGEMDFRPSRMVVVAKQVEAFIREFFDQNPLSQIGLITIKDGVAQYLTDLGGS 1487
            V+DLSRAA  MDFRPSRM VVA+ VEAFIREFFDQNPLSQI L+TIKDGVA  LT+LGGS
Sbjct: 87   VLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLTELGGS 146

Query: 1486 PESHINALMGKLGCSGDASLQNALDLVHEYLSPIPSYGHREALILYSALSTCDPGDIMES 1307
            PESHI ALM KL CSGD+SLQNAL+LVHEYL  IPSYG+RE LILYSAL+TCDPGDIME+
Sbjct: 147  PESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIMET 206

Query: 1306 IQRCKKAKIRCSIVGLSAEIFICKHICQETGGSYSVALDEAHLKELVLEHXXXXXXXXXX 1127
            IQ+CKK+K+RCS++GLSAE+FICKH+CQETGG YSVALDE+H KEL+LEH          
Sbjct: 207  IQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIAEF 266

Query: 1126 XISNLIKMGFPQRAGEGVCSICSCHKEAKFGGGYTCPRCKARVCELPTECRICGLTLVSS 947
             I+NLIKMGFPQRA EG  SICSCHKE+K G GY CPRCKARVCELPTECRICGLTLVSS
Sbjct: 267  AIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLVSS 326

Query: 946  PHLARSYHHLFPITPFDDVPPSLPRNSHLLLPKSCFGCQQSLLGPANLPGPSVACPKCKQ 767
            PHLARSYHHLFPI PFD+V PS     H    K+CFGCQQSL+ P N P   VACPKCKQ
Sbjct: 327  PHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKCKQ 386

Query: 766  YFCLDCDIYIHESLHNCPGCESFKQS 689
            YFCLDCDIYIHESLHNCPGCES + S
Sbjct: 387  YFCLDCDIYIHESLHNCPGCESLRAS 412


>ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
            max]
          Length = 420

 Score =  611 bits (1576), Expect = e-172
 Identities = 286/389 (73%), Positives = 329/389 (84%), Gaps = 3/389 (0%)
 Frame = -3

Query: 1843 AWERAYADERSWESLQEDESGLLRPIDNKTIQHAQYRRRLRTYSSSA---RIQKGLIRFL 1673
            AWER YA++RSWE+LQEDESGLLRPID   I HAQYRRRLRT +++A   RIQKGLIR+L
Sbjct: 26   AWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYL 85

Query: 1672 LIVIDLSRAAGEMDFRPSRMVVVAKQVEAFIREFFDQNPLSQIGLITIKDGVAQYLTDLG 1493
             IV+DLS+AA E DFRPSRM V+ KQVEAFIREFFDQNPLS +GL+TIKDG+A  +T+LG
Sbjct: 86   YIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELG 145

Query: 1492 GSPESHINALMGKLGCSGDASLQNALDLVHEYLSPIPSYGHREALILYSALSTCDPGDIM 1313
            GSPESHI ALMGKL CSGDASLQNAL+LV  YL+ IPSYGHRE LILYSALSTCDPGD+M
Sbjct: 146  GSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLM 205

Query: 1312 ESIQRCKKAKIRCSIVGLSAEIFICKHICQETGGSYSVALDEAHLKELVLEHXXXXXXXX 1133
            E+IQ+CKK+KIRCS++GL+AE+F+CKH+CQETGG+YSVALDE+H KEL+LEH        
Sbjct: 206  ETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIA 265

Query: 1132 XXXISNLIKMGFPQRAGEGVCSICSCHKEAKFGGGYTCPRCKARVCELPTECRICGLTLV 953
                +NLIKMGFPQR+ EG  +IC+CH+EAK GGGYTCPRCK RVCELPTECR+CGLTL+
Sbjct: 266  EYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLI 325

Query: 952  SSPHLARSYHHLFPITPFDDVPPSLPRNSHLLLPKSCFGCQQSLLGPANLPGPSVACPKC 773
            SSPHLARSYHHLFPI  FD+V PS   +S+   P +CFGCQQSLL   N PG SV CPKC
Sbjct: 326  SSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICPKC 385

Query: 772  KQYFCLDCDIYIHESLHNCPGCESFKQSK 686
            KQ FCLDCDIY+HESLHNCPGCES + SK
Sbjct: 386  KQQFCLDCDIYVHESLHNCPGCESSRHSK 414