BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00013663
         (1224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   350   5e-94
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   350   5e-94
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   347   3e-93
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   347   4e-93
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         346   6e-93

>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  350 bits (897), Expect = 5e-94
 Identities = 176/408 (43%), Positives = 254/408 (62%), Gaps = 1/408 (0%)
 Frame = +2

Query: 2    ENRVVAIEEAHDLSSMTIDELSGTLQAHEQRMNEKKARKPIEQALQVQASIKDNHKXXXX 181
            E+ V  IEE  DL +MTI++L G+LQA+E++  +KK    +EQ L +Q + ++N +    
Sbjct: 170  EHIVTVIEETKDLEAMTIEQLLGSLQAYEEK--KKKKEDIVEQVLNMQITKEENGQSYQR 227

Query: 182  XXXXXXXXXXXXXXXXXXXXXXXXDNDQERFDYNRNQHSXXXXXXXXXXXYDKSNIECFS 361
                                    DN  +R + +    S           YDKS+++C++
Sbjct: 228  RGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS----SRGRGKGHPKSRYDKSSVKCYN 283

Query: 362  CHKYGHYSSECRNKSIDQRANCVRQDETNCVQQNEEEEHTLLMVT-TADQTPNYHRWFLD 538
            C K+GHY+SEC+  S     N   +++ N V++  +EE  LLM +   D+    H+W+LD
Sbjct: 284  CGKFGHYASECKAPS-----NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLD 338

Query: 539  TGSTNHMCGNKALFAELDESFHTRVKFADDSSIPVMGKGMILIELKNGDQKFISDVFYVP 718
            +G++NHMCG K++FAELDES    V   D+S + V GKG ILI LKNGD +FIS+V+Y+P
Sbjct: 339  SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 398

Query: 719  GMKTNLLSVGQLAEKGNEMILRNGKLSIYDGKGTAILTAPMMKNRMFKVNISAGVYKCFN 898
             MKTN+LS+GQL EKG ++ L++  LSI D +   I   PM KNRMF +NI   + +C  
Sbjct: 399  SMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK 458

Query: 899  AIINDESWLWHLRFGHLNFYSLKLLKQENLVKDMPSIQHPDQLCEACIVGKHHRKPFMTQ 1078
                +ESWLWHLRFGHLNF  L+LL ++ +V+ +P I HP+Q+CE C++GK  +  F  +
Sbjct: 459  MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 1079 TQQRASQPLEIVHSDVCGPFNVESNGGSRYFLTFIDDFTRKTWVYFLQ 1222
            +  RA +PLE++H+DVCGP   +S G S YFL FIDDF+RKTWVYFL+
Sbjct: 519  SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  350 bits (897), Expect = 5e-94
 Identities = 176/408 (43%), Positives = 254/408 (62%), Gaps = 1/408 (0%)
 Frame = +2

Query: 2    ENRVVAIEEAHDLSSMTIDELSGTLQAHEQRMNEKKARKPIEQALQVQASIKDNHKXXXX 181
            E+ V  IEE  DL +MTI++L G+LQA+E++  +KK    +EQ L +Q + ++N +    
Sbjct: 170  EHIVTVIEETKDLEAMTIEQLLGSLQAYEEK--KKKKEDIVEQVLNMQITKEENGQSYQR 227

Query: 182  XXXXXXXXXXXXXXXXXXXXXXXXDNDQERFDYNRNQHSXXXXXXXXXXXYDKSNIECFS 361
                                    DN  +R + +    S           YDKS+++C++
Sbjct: 228  RGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS----SRGRGKGHPKSRYDKSSVKCYN 283

Query: 362  CHKYGHYSSECRNKSIDQRANCVRQDETNCVQQNEEEEHTLLMVT-TADQTPNYHRWFLD 538
            C K+GHY+SEC+  S     N   +++ N V++  +EE  LLM +   D+    H+W+LD
Sbjct: 284  CGKFGHYASECKAPS-----NKKFEEKANYVEEKIQEEDMLLMASYKKDEQKENHKWYLD 338

Query: 539  TGSTNHMCGNKALFAELDESFHTRVKFADDSSIPVMGKGMILIELKNGDQKFISDVFYVP 718
            +G++NHMCG K++FAELDES    V   D+S + V GKG ILI LKNGD +FIS+V+Y+P
Sbjct: 339  SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 398

Query: 719  GMKTNLLSVGQLAEKGNEMILRNGKLSIYDGKGTAILTAPMMKNRMFKVNISAGVYKCFN 898
             MKTN+LS+GQL EKG ++ L++  LSI D +   I   PM KNRMF +NI   + +C  
Sbjct: 399  SMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK 458

Query: 899  AIINDESWLWHLRFGHLNFYSLKLLKQENLVKDMPSIQHPDQLCEACIVGKHHRKPFMTQ 1078
                +ESWLWHLRFGHLNF  L+LL ++ +V+ +P I HP+Q+CE C++GK  +  F  +
Sbjct: 459  MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 1079 TQQRASQPLEIVHSDVCGPFNVESNGGSRYFLTFIDDFTRKTWVYFLQ 1222
            +  RA +PLE++H+DVCGP   +S G S YFL FIDDF+RKTWVYFL+
Sbjct: 519  SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  347 bits (891), Expect = 3e-93
 Identities = 175/408 (42%), Positives = 253/408 (62%), Gaps = 1/408 (0%)
 Frame = +2

Query: 2    ENRVVAIEEAHDLSSMTIDELSGTLQAHEQRMNEKKARKPIEQALQVQASIKDNHKXXXX 181
            E+ V  IEE  DL +MTI++L G+LQA+E++  +KK    +EQ L +Q + ++N +    
Sbjct: 170  EHIVTVIEETKDLEAMTIEQLLGSLQAYEEK--KKKKEDIVEQVLNMQITKEENGQSYQR 227

Query: 182  XXXXXXXXXXXXXXXXXXXXXXXXDNDQERFDYNRNQHSXXXXXXXXXXXYDKSNIECFS 361
                                    DN  +R + +    S           YDKS+++C++
Sbjct: 228  RGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS----SRGRGKGHPKSRYDKSSVKCYN 283

Query: 362  CHKYGHYSSECRNKSIDQRANCVRQDETNCVQQNEEEEHTLLMVT-TADQTPNYHRWFLD 538
            C K+GHY+SEC+  S     N   +++ N V++  +EE  LLM +   D+    H+W+LD
Sbjct: 284  CGKFGHYASECKAPS-----NKKFKEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLD 338

Query: 539  TGSTNHMCGNKALFAELDESFHTRVKFADDSSIPVMGKGMILIELKNGDQKFISDVFYVP 718
            +G++NHMCG K++FAELDES    V   D+S + V GKG ILI LKNGD +FIS+V+Y+P
Sbjct: 339  SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 398

Query: 719  GMKTNLLSVGQLAEKGNEMILRNGKLSIYDGKGTAILTAPMMKNRMFKVNISAGVYKCFN 898
             MKTN+LS+GQL EKG ++ L++  LSI D +   I   PM KNRMF +NI   + +C  
Sbjct: 399  SMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLK 458

Query: 899  AIINDESWLWHLRFGHLNFYSLKLLKQENLVKDMPSIQHPDQLCEACIVGKHHRKPFMTQ 1078
                +ESWLWHLRFGHLNF  L+LL ++ +V+ +P I HP+Q+CE C++G   +  F  +
Sbjct: 459  MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKE 518

Query: 1079 TQQRASQPLEIVHSDVCGPFNVESNGGSRYFLTFIDDFTRKTWVYFLQ 1222
            +  RA +PLE++H+DVCGP   +S G S YFL FIDDF+RKTWVYFL+
Sbjct: 519  SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  347 bits (890), Expect = 4e-93
 Identities = 176/408 (43%), Positives = 253/408 (62%), Gaps = 1/408 (0%)
 Frame = +2

Query: 2    ENRVVAIEEAHDLSSMTIDELSGTLQAHEQRMNEKKARKPIEQALQVQASIKDNHKXXXX 181
            E+ V  IEE  DL +MTI++L G+LQA+E++  +KK    IEQ L +Q + ++N +    
Sbjct: 170  EHIVTVIEETKDLEAMTIEQLLGSLQAYEEK--KKKKEDIIEQVLNMQITKEENGQSYQR 227

Query: 182  XXXXXXXXXXXXXXXXXXXXXXXXDNDQERFDYNRNQHSXXXXXXXXXXXYDKSNIECFS 361
                                    DN  +R + +    S           YDKS+++C++
Sbjct: 228  RGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS----SRGRGKGHPKSRYDKSSVKCYN 283

Query: 362  CHKYGHYSSECRNKSIDQRANCVRQDETNCVQQNEEEEHTLLMVT-TADQTPNYHRWFLD 538
            C K+GHY+SEC+  S     N   +++ N V++  +EE  LLM +   D+    H+W+LD
Sbjct: 284  CGKFGHYASECKAPS-----NKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLD 338

Query: 539  TGSTNHMCGNKALFAELDESFHTRVKFADDSSIPVMGKGMILIELKNGDQKFISDVFYVP 718
            +G++NHMCG K++FAELDES    V   D+S + V GKG ILI LKNGD +FIS+V+Y+P
Sbjct: 339  SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 398

Query: 719  GMKTNLLSVGQLAEKGNEMILRNGKLSIYDGKGTAILTAPMMKNRMFKVNISAGVYKCFN 898
             MKTN+LS+GQL EKG ++ L++  LSI D +   I   PM KNRMF +NI   + +C  
Sbjct: 399  SMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK 458

Query: 899  AIINDESWLWHLRFGHLNFYSLKLLKQENLVKDMPSIQHPDQLCEACIVGKHHRKPFMTQ 1078
                +ESWLWHLRFGHLNF  L+LL ++ +V+ +P I HP+Q+CE C++GK  +  F  +
Sbjct: 459  MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 1079 TQQRASQPLEIVHSDVCGPFNVESNGGSRYFLTFIDDFTRKTWVYFLQ 1222
            +  RA + LE++H+DVCGP   +S G S YFL FIDDF+RKTWVYFL+
Sbjct: 519  SSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  346 bits (888), Expect = 6e-93
 Identities = 175/408 (42%), Positives = 253/408 (62%), Gaps = 1/408 (0%)
 Frame = +2

Query: 2    ENRVVAIEEAHDLSSMTIDELSGTLQAHEQRMNEKKARKPIEQALQVQASIKDNHKXXXX 181
            E+ V  IEE  DL +MTI++L G+LQA+E++  +KK     EQ L +Q + ++N +    
Sbjct: 170  EHIVTVIEETKDLEAMTIEQLLGSLQAYEEK--KKKKEDIAEQVLNMQITKEENGQSYQR 227

Query: 182  XXXXXXXXXXXXXXXXXXXXXXXXDNDQERFDYNRNQHSXXXXXXXXXXXYDKSNIECFS 361
                                    DN  +R + +    S           YDKS+++C++
Sbjct: 228  RGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENS----SRGRGKGHPKSRYDKSSVKCYN 283

Query: 362  CHKYGHYSSECRNKSIDQRANCVRQDETNCVQQNEEEEHTLLMVT-TADQTPNYHRWFLD 538
            C K+GHY+SEC+  S     N   +++ + V++  +EE  LLM +   D+    H+W+LD
Sbjct: 284  CGKFGHYASECKAPS-----NKKFEEKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLD 338

Query: 539  TGSTNHMCGNKALFAELDESFHTRVKFADDSSIPVMGKGMILIELKNGDQKFISDVFYVP 718
            +G++NHMCG K++FAELDES    V   D+S + V GKG ILI LKNGD +FIS+V+Y+P
Sbjct: 339  SGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIP 398

Query: 719  GMKTNLLSVGQLAEKGNEMILRNGKLSIYDGKGTAILTAPMMKNRMFKVNISAGVYKCFN 898
             MKTN+LS+GQL EKG ++ L++  LSI D +   I   PM KNRMF +NI   + +C  
Sbjct: 399  SMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK 458

Query: 899  AIINDESWLWHLRFGHLNFYSLKLLKQENLVKDMPSIQHPDQLCEACIVGKHHRKPFMTQ 1078
                +ESWLWHLRFGHLNF  L+LL ++ +V+ +P I HP+Q+CE C++GK  +  F  +
Sbjct: 459  MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518

Query: 1079 TQQRASQPLEIVHSDVCGPFNVESNGGSRYFLTFIDDFTRKTWVYFLQ 1222
            +  RA +PLE++H+DVCGP   +S G S YFL FIDDF+RKTWVYFL+
Sbjct: 519  SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLK 566