BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00013632
         (1133 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativ...   258   2e-66
gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indi...   258   2e-66
ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group] g...   258   2e-66
ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|2...   255   2e-65
sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,...   255   2e-65

>gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
          Length = 205

 Score =  258 bits (659), Expect = 2e-66
 Identities = 127/180 (70%), Positives = 148/180 (82%)
 Frame = -3

Query: 1131 VGNLPFSCDSALLAGIFGRAGTVEMVEVIYDKITGRSRGFAFVTMSSXXXXXXXXEQFNG 952
            VGNLPFS DSA LAG+F +AG+VEMVEV+YD+ TGRSRGF FVTMS+        EQFNG
Sbjct: 25   VGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQFNG 84

Query: 951  YELDGRPLRVNAGPPPPREDNPFRAPRSGGRSFDNTNRVYVGNLAWGVDNLALETLFSEQ 772
            Y   GRPLRVN+GPPPPR+D   R+PR GG +FD++N++YVGNLAWGVDN  LE LFSEQ
Sbjct: 85   YTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQ 144

Query: 771  GKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAPAMRQ 592
            G VL+AKV+YDRESGRSRGFGFVTYGSA EVN AI +L+G +LDGRQIRV+VAE+   RQ
Sbjct: 145  GTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQ 204



 Score = 77.8 bits (190), Expect = 5e-12
 Identities = 38/79 (48%), Positives = 50/79 (63%)
 Frame = -3

Query: 840 RVYVGNLAWGVDNLALETLFSEQGKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDS 661
           +V+VGNL + VD+  L  LF + G V   +VVYDR++GRSRGFGFVT  +A E   AI+ 
Sbjct: 22  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQ 81

Query: 660 LNGAELDGRQIRVSVAEAP 604
            NG    GR +RV+    P
Sbjct: 82  FNGYTFQGRPLRVNSGPPP 100


>gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
          Length = 259

 Score =  258 bits (659), Expect = 2e-66
 Identities = 127/180 (70%), Positives = 148/180 (82%)
 Frame = -3

Query: 1131 VGNLPFSCDSALLAGIFGRAGTVEMVEVIYDKITGRSRGFAFVTMSSXXXXXXXXEQFNG 952
            VGNLPFS DSA LAG+F +AG+VEMVEV+YD+ TGRSRGF FVTMS+        EQFNG
Sbjct: 79   VGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNG 138

Query: 951  YELDGRPLRVNAGPPPPREDNPFRAPRSGGRSFDNTNRVYVGNLAWGVDNLALETLFSEQ 772
            Y   GRPLRVN+GPPPPR+D   R+PR GG +FD++N++YVGNLAWGVDN  LE LFSEQ
Sbjct: 139  YTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQ 198

Query: 771  GKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAPAMRQ 592
            G VL+AKV+YDRESGRSRGFGFVTYGSA EVN AI +L+G +LDGRQIRV+VAE+   RQ
Sbjct: 199  GTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQ 258



 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = -3

Query: 840 RVYVGNLAWGVDNLALETLFSEQGKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDS 661
           +V+VGNL + VD+  L  LF + G V   +VVYDR++GRSRGFGFVT  +A E   A++ 
Sbjct: 76  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 135

Query: 660 LNGAELDGRQIRVSVAEAP 604
            NG    GR +RV+    P
Sbjct: 136 FNGYTFQGRPLRVNSGPPP 154


>ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
            gi|22296371|dbj|BAC10140.1| putative 29 kDa
            ribonucleoprotein A, chloroplast precursor [Oryza sativa
            Japonica Group] gi|113611900|dbj|BAF22278.1| Os07g0631900
            [Oryza sativa Japonica Group] gi|125601192|gb|EAZ40768.1|
            hypothetical protein OsJ_25244 [Oryza sativa Japonica
            Group]
          Length = 264

 Score =  258 bits (659), Expect = 2e-66
 Identities = 127/180 (70%), Positives = 148/180 (82%)
 Frame = -3

Query: 1131 VGNLPFSCDSALLAGIFGRAGTVEMVEVIYDKITGRSRGFAFVTMSSXXXXXXXXEQFNG 952
            VGNLPFS DSA LAG+F +AG+VEMVEV+YD+ TGRSRGF FVTMS+        EQFNG
Sbjct: 84   VGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNG 143

Query: 951  YELDGRPLRVNAGPPPPREDNPFRAPRSGGRSFDNTNRVYVGNLAWGVDNLALETLFSEQ 772
            Y   GRPLRVN+GPPPPR+D   R+PR GG +FD++N++YVGNLAWGVDN  LE LFSEQ
Sbjct: 144  YTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQ 203

Query: 771  GKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAPAMRQ 592
            G VL+AKV+YDRESGRSRGFGFVTYGSA EVN AI +L+G +LDGRQIRV+VAE+   RQ
Sbjct: 204  GTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESKPRRQ 263



 Score = 79.0 bits (193), Expect = 2e-12
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
 Frame = -3

Query: 933 PLRVNAGPPPPREDNPFRAPRSGGRS---FDNTNRVYVGNLAWGVDNLALETLFSEQGKV 763
           PLR    P      +       G  S   F    +V+VGNL + VD+  L  LF + G V
Sbjct: 47  PLRRRLSPVAVAVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSV 106

Query: 762 LEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAP 604
              +VVYDR++GRSRGFGFVT  +A E   A++  NG    GR +RV+    P
Sbjct: 107 EMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPP 159


>ref|XP_002323470.1| predicted protein [Populus trichocarpa] gi|222868100|gb|EEF05231.1|
            predicted protein [Populus trichocarpa]
          Length = 273

 Score =  255 bits (651), Expect = 2e-65
 Identities = 130/180 (72%), Positives = 147/180 (81%)
 Frame = -3

Query: 1131 VGNLPFSCDSALLAGIFGRAGTVEMVEVIYDKITGRSRGFAFVTMSSXXXXXXXXEQFNG 952
            VGNLPF+ DSA LAG+F  AG VEMVEVIYDK+TGRSRGF FVTM++        +QFNG
Sbjct: 94   VGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNG 153

Query: 951  YELDGRPLRVNAGPPPPREDNPFRAPRSGGRSFDNTNRVYVGNLAWGVDNLALETLFSEQ 772
            YELDGR LRVN GPPP +E +  R PR GG +FD+ NRVYVGNL+W VDNLALETLF E+
Sbjct: 154  YELDGRTLRVNFGPPPQKESSFSRGPR-GGETFDSGNRVYVGNLSWNVDNLALETLFREK 212

Query: 771  GKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAPAMRQ 592
            G+V++AKVVYDR+SGRSRGFGFVTY SA EV+ AIDSLNGAELDGR IRVSVAEA   RQ
Sbjct: 213  GRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRVSVAEAKPRRQ 272



 Score = 77.4 bits (189), Expect = 6e-12
 Identities = 39/92 (42%), Positives = 53/92 (57%)
 Frame = -3

Query: 861 RSFDNTNRVYVGNLAWGVDNLALETLFSEQGKVLEAKVVYDRESGRSRGFGFVTYGSANE 682
           +SF    +++VGNL + VD+  L  LF   G V   +V+YD+ +GRSRGFGFVT  +  E
Sbjct: 84  QSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMTTIEE 143

Query: 681 VNRAIDSLNGAELDGRQIRVSVAEAPAMRQQY 586
           V  A    NG ELDGR +RV+    P     +
Sbjct: 144 VEAASKQFNGYELDGRTLRVNFGPPPQKESSF 175


>sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
            Full=CP29A; Flags: Precursor gi|19754|emb|CAA43427.1|
            29kD A ribonucleoprotein [Nicotiana sylvestris]
          Length = 273

 Score =  255 bits (651), Expect = 2e-65
 Identities = 132/183 (72%), Positives = 149/183 (81%), Gaps = 1/183 (0%)
 Frame = -3

Query: 1131 VGNLPFSCDSALLAGIFGRAGTVEMVEVIYDKITGRSRGFAFVTMSSXXXXXXXXEQFNG 952
            VGNLPFS DSA LA +F RAG VEMVEVIYDK+TGRSRGF FVTMSS        +QFNG
Sbjct: 91   VGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNG 150

Query: 951  YELDGRPLRVNAGPPPP-REDNPFRAPRSGGRSFDNTNRVYVGNLAWGVDNLALETLFSE 775
            YELDGR LRVN+GPPP  RE++ FR    GG SFD++NRVYVGNLAWGVD  ALETLFSE
Sbjct: 151  YELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSE 210

Query: 774  QGKVLEAKVVYDRESGRSRGFGFVTYGSANEVNRAIDSLNGAELDGRQIRVSVAEAPAMR 595
            QGKV++AKVVYDR+SGRSRGFGFVTY SA EVN AI+SL+G +L+GR IRVS AEA   R
Sbjct: 211  QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 270

Query: 594  QQY 586
            +Q+
Sbjct: 271  RQF 273



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 41/90 (45%), Positives = 54/90 (60%)
 Frame = -3

Query: 861 RSFDNTNRVYVGNLAWGVDNLALETLFSEQGKVLEAKVVYDRESGRSRGFGFVTYGSANE 682
           R+F    +++VGNL +  D+ AL  LF   G V   +V+YD+ +GRSRGFGFVT  S  E
Sbjct: 81  RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140

Query: 681 VNRAIDSLNGAELDGRQIRVSVAEAPAMRQ 592
           V  A    NG ELDGR +RV+    P  R+
Sbjct: 141 VEAACQQFNGYELDGRALRVNSGPPPEKRE 170