BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00013455
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-li...    78   7e-13
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...    70   2e-10
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       70   2e-10
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]       70   2e-10
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de...    70   2e-10

>ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|449491619|ref|XP_004158954.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 45/93 (48%), Positives = 61/93 (65%)
 Frame = -1

Query: 315 MGTTIHVSGFRNLVPAEDLKALVEKYTGKDTVYAVKVLRESRIQGNAPYARIQFITSQNA 136
           MG TIH+SGF + V A+ +K  +E +TG  TVYA+KV R  +  G   YA +QF ++  A
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKV-RPPKRGGGRLYAIVQFTSATQA 59

Query: 135 EYIIALADQRRLRYRGRYLKACANDIDIIKNPR 37
           E II+LA+Q RL Y   YLKA A ++DI+  PR
Sbjct: 60  ELIISLANQ-RLWYGSSYLKARATEVDIVPKPR 91


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 42/93 (45%), Positives = 54/93 (58%)
 Frame = -1

Query: 315 MGTTIHVSGFRNLVPAEDLKALVEKYTGKDTVYAVKVLRESRIQGNAPYARIQFITSQNA 136
           MG TI V GF N V AE++K  +E+ TG  TVYA+KV R+ +  G   +A +QF   + A
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-RQPKKGGPRVFAIVQFTNERYA 59

Query: 135 EYIIALADQRRLRYRGRYLKACANDIDIIKNPR 37
             II  A +RRL Y   YL A   D DI+  PR
Sbjct: 60  RQIITGAAERRLYYGRSYLNAFEVDQDIVPKPR 92


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 44/94 (46%), Positives = 60/94 (63%)
 Frame = -1

Query: 315 MGTTIHVSGFRNLVPAEDLKALVEKYTGKDTVYAVKVLRESRIQGNAPYARIQFITSQNA 136
           MG TI V GF + V A ++K  +E YTG++TVYA+K+ R+ +  G A +A +QF  S +A
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKI-RQHKKSGRA-FAIVQFTRSSDA 58

Query: 135 EYIIALADQRRLRYRGRYLKACANDIDIIKNPRV 34
             II LA+Q RL Y   YLKA   + DI+  PRV
Sbjct: 59  GLIIRLANQ-RLYYGRSYLKAREMETDIVPKPRV 91


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 44/94 (46%), Positives = 60/94 (63%)
 Frame = -1

Query: 315 MGTTIHVSGFRNLVPAEDLKALVEKYTGKDTVYAVKVLRESRIQGNAPYARIQFITSQNA 136
           MG TI V GF + V A ++K  +E YTG++TVYA+K+ R+ +  G A +A +QF  S +A
Sbjct: 1   MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKI-RQHKKSGRA-FAIVQFTRSSDA 58

Query: 135 EYIIALADQRRLRYRGRYLKACANDIDIIKNPRV 34
             II LA+Q RL Y   YLKA   + DI+  PRV
Sbjct: 59  GLIIRLANQ-RLYYGRSYLKAREMETDIVPKPRV 91


>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1139

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 43/107 (40%), Positives = 67/107 (62%)
 Frame = -1

Query: 321 GFMGTTIHVSGFRNLVPAEDLKALVEKYTGKDTVYAVKVLRESRIQGNAPYARIQFITSQ 142
           G+MG TI V GF +L+ AE +K+ +EK+TG  TV A++V +  R  G+  +A++QF+ + 
Sbjct: 25  GYMGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKR--GSRAFAKVQFVDNI 82

Query: 141 NAEYIIALADQRRLRYRGRYLKACANDIDIIKNPRVRTVVDQMKHVT 1
           +A+ II LA  +RL +   YLKA     DI+   ++R  VD M  +T
Sbjct: 83  SADKIINLA-SKRLYFGSSYLKAWEMKADIV---QLRAYVDHMDGIT 125