BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012681
         (569 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   287   7e-76
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              283   1e-74
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   283   1e-74
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   281   5e-74
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...   268   6e-70

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  287 bits (735), Expect = 7e-76
 Identities = 138/189 (73%), Positives = 162/189 (85%)
 Frame = -3

Query: 567 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGE 388
           + E+ISGVVA L RTNPLQ+I++MR+TRQ+V YTGK+G ARYPHPSHWGKICF+STPDGE
Sbjct: 306 KMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGE 365

Query: 387 NCGLIKNLASTGLVSTSVLEPFIDKLLDCGMEELADDTSTSLHGKTFIFLDGELVGVCQD 208
           NCGL+KNLA TGLVST++ E F+DKLLD GME+L DDTST L GK  +FLDG  VGVC D
Sbjct: 366 NCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWVGVCGD 425

Query: 207 SASFVAKLRSLRRRKEIPNQVEIKRDEKNREVRIFCDAGRVLRPLLVIRNIMKIKSIKKG 28
           S SFVA LR  RRRKE+P+QVEIKRDE++REVR+F DAGR+LRPLLV+ N+ KIK+ K G
Sbjct: 426 SVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGG 485

Query: 27  DYGFQSLLD 1
           DY FQSLLD
Sbjct: 486 DYSFQSLLD 494


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  283 bits (724), Expect = 1e-74
 Identities = 132/189 (69%), Positives = 158/189 (83%)
 Frame = -3

Query: 567  RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGE 388
            R E+ISGVVA L RTNPLQ  ++MR+TRQ+V+YTGK+G ARYPHPSHWGK+CF+STPDGE
Sbjct: 522  RMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGE 581

Query: 387  NCGLIKNLASTGLVSTSVLEPFIDKLLDCGMEELADDTSTSLHGKTFIFLDGELVGVCQD 208
            NCGL+KNLA TGLVST VL+P +DKL DCGME+L DDTST L GK  +FLDG+ VGVC+D
Sbjct: 582  NCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCED 641

Query: 207  SASFVAKLRSLRRRKEIPNQVEIKRDEKNREVRIFCDAGRVLRPLLVIRNIMKIKSIKKG 28
              SFV +LR+ RR KE+P QVEIKRDE+  EVRIF DAGR+LRPLLV+ N+ K+K+ K  
Sbjct: 642  PISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGD 701

Query: 27   DYGFQSLLD 1
            D+ FQSLLD
Sbjct: 702  DFTFQSLLD 710


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  283 bits (724), Expect = 1e-74
 Identities = 132/189 (69%), Positives = 158/189 (83%)
 Frame = -3

Query: 567  RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGE 388
            R E+ISGVVA L RTNPLQ  ++MR+TRQ+V+YTGK+G ARYPHPSHWGK+CF+STPDGE
Sbjct: 486  RMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGE 545

Query: 387  NCGLIKNLASTGLVSTSVLEPFIDKLLDCGMEELADDTSTSLHGKTFIFLDGELVGVCQD 208
            NCGL+KNLA TGLVST VL+P +DKL DCGME+L DDTST L GK  +FLDG+ VGVC+D
Sbjct: 546  NCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCED 605

Query: 207  SASFVAKLRSLRRRKEIPNQVEIKRDEKNREVRIFCDAGRVLRPLLVIRNIMKIKSIKKG 28
              SFV +LR+ RR KE+P QVEIKRDE+  EVRIF DAGR+LRPLLV+ N+ K+K+ K  
Sbjct: 606  PISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGD 665

Query: 27   DYGFQSLLD 1
            D+ FQSLLD
Sbjct: 666  DFTFQSLLD 674


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  281 bits (719), Expect = 5e-74
 Identities = 131/189 (69%), Positives = 159/189 (84%)
 Frame = -3

Query: 567  RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGE 388
            R E++SGVVA L RTNPLQ  ++MR++RQ+V YTGK+G ARYPHPSHWGK+CF+STPDGE
Sbjct: 499  RMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGE 558

Query: 387  NCGLIKNLASTGLVSTSVLEPFIDKLLDCGMEELADDTSTSLHGKTFIFLDGELVGVCQD 208
            NCGL+KNLAS GLVST +L+PF++ L  CGM++L DD STSLHGK  + LDGE VGVC+D
Sbjct: 559  NCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCED 618

Query: 207  SASFVAKLRSLRRRKEIPNQVEIKRDEKNREVRIFCDAGRVLRPLLVIRNIMKIKSIKKG 28
            SA FV+KLR  RRR E+P+QVE+KRDE   EVRIF D GR+LRPLLV+ N+ KIK++K G
Sbjct: 619  SALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGG 678

Query: 27   DYGFQSLLD 1
            DYGFQSLLD
Sbjct: 679  DYGFQSLLD 687


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score =  268 bits (684), Expect = 6e-70
 Identities = 125/187 (66%), Positives = 156/187 (83%)
 Frame = -3

Query: 561  EKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSHWGKICFVSTPDGENC 382
            E++SGVV NL R NPLQ++ ++R+TRQ+V YTGK+G ARYPHPSHWG++CF+STPDGENC
Sbjct: 460  ERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENC 519

Query: 381  GLIKNLASTGLVSTSVLEPFIDKLLDCGMEELADDTSTSLHGKTFIFLDGELVGVCQDSA 202
            GL+KNLA TG+VST++ E  +DKL D GME+L DDT T L GK  +FL+GE VGVC+DS 
Sbjct: 520  GLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSC 579

Query: 201  SFVAKLRSLRRRKEIPNQVEIKRDEKNREVRIFCDAGRVLRPLLVIRNIMKIKSIKKGDY 22
             FV +LRS+RRR+E+P QVEIKRDE+ REVRIF DAGR+LRPLLV+ N+ KIK+ K G+Y
Sbjct: 580  LFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNY 639

Query: 21   GFQSLLD 1
             F SLLD
Sbjct: 640  IFTSLLD 646