BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012619
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]          326   5e-87
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   316   4e-84
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]        315   7e-84
gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]   315   9e-84
gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|16...   315   1e-83

>gb|AAK70407.1|AF369930_2 pol polyprotein [Citrus x paradisi]
          Length = 701

 Score =  326 bits (835), Expect = 5e-87
 Identities = 150/276 (54%), Positives = 206/276 (74%)
 Frame = +1

Query: 37   YVSDGLFIINVEPLHSGLVNDNISPSVNCVESSSLWHARLGHLNFGALNNMMNLELIPKH 216
            YV+DGLF +NV  L    +N+  + S   +ESS++WH RLGH+NF +L  ++N++ IP  
Sbjct: 428  YVNDGLFKLNVMTLKP-TINNKATSSAYLLESSNIWHGRLGHVNFNSLRKLINMKHIPNF 486

Query: 217  AIDKKTKCQVCVSAKQIRKPFHNVVRDSGILDLVHTDICEFNGMMTKDNKRYFITFIDDC 396
             ID K KC+ CV AK  R  F  + R+S  LDL+H+DIC+F  + T+   +YFITFIDDC
Sbjct: 487  QIDLKHKCKTCVEAKLTRSSFQIIQRNSEPLDLIHSDICDFKSIQTRGGNKYFITFIDDC 546

Query: 397  SRYCYVYLLKHKDEALEKFIEYKNEAEKQTGKSLKRLRSDRGGEYMSTSFNEFCKSNGIV 576
            ++YCYVYLLK KDEAL+KFI YKNE E Q  + +K LRSDRGGEY+   F   C+ +GI+
Sbjct: 547  TKYCYVYLLKSKDEALDKFILYKNEVENQLNRKIKELRSDRGGEYV-VPFMSLCEQSGII 605

Query: 577  HEVTPPYTPESNGVAERKNRTFTDMINSMLLNSGLPKYMWGEALNTACHILNRVPLKHMD 756
            H+VT PY+P+SNG+AERKNRT  +M+N+ML++SGLP+ MWGEA+ +A ++LN++P K  +
Sbjct: 606  HQVTAPYSPQSNGIAERKNRTLKEMMNAMLISSGLPQNMWGEAVLSANYLLNKIPRKQEN 665

Query: 757  TSPYELWRSRKTSLKYLRVWGCLAKVLVPEHKRKKL 864
            T+PYELW+ R  S K+LRVWGCLAKV+VP +K+ K+
Sbjct: 666  TTPYELWKGRSPSYKFLRVWGCLAKVVVPLNKKVKI 701


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score =  316 bits (810), Expect = 4e-84
 Identities = 148/278 (53%), Positives = 199/278 (71%), Gaps = 1/278 (0%)
 Frame = +1

Query: 37   YVSDGLFIINVEPLHSGLVNDNISPSVNCVESSSLWHARLGHLNFGALNNMMNLELIPKH 216
            Y S GLF  ++  + +   N N    ++ ++ S++WH+RL H+NFG L  + N+ LIPK 
Sbjct: 512  YDSGGLFRFSLNDMCN---NHNAVNHISEIDESNVWHSRLCHVNFGCLTRLANMSLIPKF 568

Query: 217  AIDKKTKCQVCVSAKQIRKPFH-NVVRDSGILDLVHTDICEFNGMMTKDNKRYFITFIDD 393
             + K +KC  CV +KQ RKP   +  R+   L+LVH+D+CE NG++TK  K+YF+T IDD
Sbjct: 569  TLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDD 628

Query: 394  CSRYCYVYLLKHKDEALEKFIEYKNEAEKQTGKSLKRLRSDRGGEYMSTSFNEFCKSNGI 573
            C+R+CYVYLLK KDEAL  F  YK E E Q  + +KRLRSDRGGEY S  F  FC+  GI
Sbjct: 629  CTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGI 688

Query: 574  VHEVTPPYTPESNGVAERKNRTFTDMINSMLLNSGLPKYMWGEALNTACHILNRVPLKHM 753
            +HE+TPPY+P+SNGVAERKNRT T+M+N+ML  +GL K  WGEA+ TACH+LN++P+KH 
Sbjct: 689  IHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHK 748

Query: 754  DTSPYELWRSRKTSLKYLRVWGCLAKVLVPEHKRKKLG 867
            + +P+E W  +K +L YLR WGCLAKV VP  K++KLG
Sbjct: 749  EVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLG 786


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  315 bits (808), Expect = 7e-84
 Identities = 149/278 (53%), Positives = 199/278 (71%), Gaps = 1/278 (0%)
 Frame = +1

Query: 37   YVSDGLFIINVEPLHSGLVNDNISPSVNCVESSSLWHARLGHLNFGALNNMMNLELIPKH 216
            Y S GLF  ++  + +   N N    ++  + S++WH+RL H+NFG +  + N+ LIPK 
Sbjct: 420  YDSGGLFRFSLNDMCN---NHNAVNHISENDESNVWHSRLCHVNFGCMTRLANMSLIPKF 476

Query: 217  AIDKKTKCQVCVSAKQIRKPFH-NVVRDSGILDLVHTDICEFNGMMTKDNKRYFITFIDD 393
             + K +KC  CV +KQ RKP   + VR+   L+LVH+D+CE NG++TK  K+YF+T IDD
Sbjct: 477  TLVKGSKCHTCVQSKQPRKPHKASEVRNLAPLELVHSDLCEMNGVLTKGGKKYFMTLIDD 536

Query: 394  CSRYCYVYLLKHKDEALEKFIEYKNEAEKQTGKSLKRLRSDRGGEYMSTSFNEFCKSNGI 573
            C+R+CYVYLLK KDEAL  F  YK E E Q  + +KRLRSDRGGEY S  F  FC+  GI
Sbjct: 537  CTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGI 596

Query: 574  VHEVTPPYTPESNGVAERKNRTFTDMINSMLLNSGLPKYMWGEALNTACHILNRVPLKHM 753
            +HE+TPPY+P+SNGVAERKNRT T+M+N+ML  +GL K  WGEA+ TACH+LN++P+KH 
Sbjct: 597  IHEMTPPYSPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTACHVLNKIPMKHK 656

Query: 754  DTSPYELWRSRKTSLKYLRVWGCLAKVLVPEHKRKKLG 867
            + +P+E W  +K +L YLR WGCLAKV VP  KR+KLG
Sbjct: 657  EITPFEEWERKKLNLSYLRTWGCLAKVNVPIAKRRKLG 694


>gb|AAL75486.1|AF466202_12 putative Fourf gag/pol protein [Zea mays]
          Length = 1292

 Score =  315 bits (807), Expect = 9e-84
 Identities = 151/278 (54%), Positives = 197/278 (70%), Gaps = 1/278 (0%)
 Frame = +1

Query: 37   YVSDGLFIINVEPLHSGLVNDNISPSVNCVESSSLWHARLGHLNFGALNNMMNLELIPKH 216
            Y   GLF +++  + + LVN     SV+  + S LWH+R  H +FG L  + N+ LIPK 
Sbjct: 418  YDCGGLFRLSLHDVCNKLVN-----SVHFSDESDLWHSRFCHASFGCLMRLANINLIPKF 472

Query: 217  AIDKKTKCQVCVSAKQIRKPFHNV-VRDSGILDLVHTDICEFNGMMTKDNKRYFITFIDD 393
             + KK+KC VCV +KQ RKP      R    L+LVH+D+CE NG++TK  KRYF+TFIDD
Sbjct: 473  NLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDD 532

Query: 394  CSRYCYVYLLKHKDEALEKFIEYKNEAEKQTGKSLKRLRSDRGGEYMSTSFNEFCKSNGI 573
             +R+CYVYLLK KDEA   F  YK E E Q  + +KRLRSDRGGEY S  F+EFC  +GI
Sbjct: 533  STRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEYFSNVFDEFCVEHGI 592

Query: 574  VHEVTPPYTPESNGVAERKNRTFTDMINSMLLNSGLPKYMWGEALNTACHILNRVPLKHM 753
            +HE TPP++P+SNG+AERKNRT TD++N+ML  +GL K  WGEA+ TACH+LNRVP K+ 
Sbjct: 593  IHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAILTACHVLNRVPTKNK 652

Query: 754  DTSPYELWRSRKTSLKYLRVWGCLAKVLVPEHKRKKLG 867
            + +P+E W  R+ +L YLR WGCLAKV VP +K++KLG
Sbjct: 653  EITPFEEWEKRRLNLSYLRTWGCLAKVNVPINKKRKLG 690


>gb|AAK73108.1|AF391808_10 Fourf gag/pol protein [Zea mays] gi|168251067|gb|ACA21850.1| Fourf
            gag/pol protein [Zea mays]
          Length = 1279

 Score =  315 bits (806), Expect = 1e-83
 Identities = 151/278 (54%), Positives = 196/278 (70%), Gaps = 1/278 (0%)
 Frame = +1

Query: 37   YVSDGLFIINVEPLHSGLVNDNISPSVNCVESSSLWHARLGHLNFGALNNMMNLELIPKH 216
            Y   GLF +++  + + LVN     SVN  + S LWH+R  H +FG L  + N+ LIPK 
Sbjct: 378  YECGGLFRLSLHDVCNKLVN-----SVNFSDESDLWHSRFCHASFGCLMRLANINLIPKF 432

Query: 217  AIDKKTKCQVCVSAKQIRKPFHNV-VRDSGILDLVHTDICEFNGMMTKDNKRYFITFIDD 393
             + KK+KC VCV +KQ RKP      R    L+LVH+D+CE NG++TK  KRYF+TFIDD
Sbjct: 433  NLVKKSKCHVCVESKQPRKPHKAAEARSLAPLELVHSDLCEMNGILTKGGKRYFLTFIDD 492

Query: 394  CSRYCYVYLLKHKDEALEKFIEYKNEAEKQTGKSLKRLRSDRGGEYMSTSFNEFCKSNGI 573
             +R+CYVYLLK KDEA   F  YK E E Q  + +KRLRSDRGGE+ S  F+EFC  +GI
Sbjct: 493  STRFCYVYLLKTKDEAFNYFKAYKAEVENQLERKIKRLRSDRGGEFFSNLFDEFCVEHGI 552

Query: 574  VHEVTPPYTPESNGVAERKNRTFTDMINSMLLNSGLPKYMWGEALNTACHILNRVPLKHM 753
            +HE TPP++P+SNG+AERKNRT TD++N+ML  +GL K  WGEA+  ACH+LNRVP K+ 
Sbjct: 553  IHERTPPFSPQSNGIAERKNRTLTDLVNAMLSTAGLSKAWWGEAILIACHVLNRVPTKNK 612

Query: 754  DTSPYELWRSRKTSLKYLRVWGCLAKVLVPEHKRKKLG 867
            + +P+E W  RK +L YLR WGCLAKV VP +K++KLG
Sbjct: 613  EITPFEEWEKRKLNLSYLRTWGCLAKVNVPINKKRKLG 650