BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012526
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002299342.1| predicted protein [Populus trichocarpa] gi|2...   363   3e-98
ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containi...   355   9e-96
ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containi...   351   1e-94
emb|CBI35666.3| unnamed protein product [Vitis vinifera]              348   1e-93
ref|NP_196831.1| pentatricopeptide repeat-containing protein [Ar...   317   2e-84

>ref|XP_002299342.1| predicted protein [Populus trichocarpa] gi|222846600|gb|EEE84147.1|
            predicted protein [Populus trichocarpa]
          Length = 684

 Score =  363 bits (933), Expect = 3e-98
 Identities = 167/241 (69%), Positives = 199/241 (82%)
 Frame = -2

Query: 963  YGVEPTVDHYDCMIDIYARAGLLKKAYELIKSMPFQPDAMSWKSLLGGCSVHRNFELGKI 784
            YGV  T+DHYDCM+DIY+RAG L++A ELI+SMPF PDAMSWK LLGGC  +RN E+G++
Sbjct: 444  YGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGEL 503

Query: 783  AAEELLRVDPEDIAAYVLMFNLYVSSGKWNEAADVRRRMAERDLRKEVGCSWITIKGQVH 604
            AAE L ++DPED A Y+LMFNLY S GKW EAA+VR+ MAER+LRKE+ CSWIT+KG+VH
Sbjct: 504  AAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVH 563

Query: 603  RFIVGDKYHPQTEAIYSKLNELKFPRTKNEHVILSEDDAGNNLSERRDQLLDHSERLAIA 424
            RFIVGDK+HPQTE IYSKL  L     K E  +L+E+D  N+L ER++QLL HSERLA+A
Sbjct: 564  RFIVGDKHHPQTEEIYSKLEALNDSVIKEETGLLTEEDVSNSLPERKEQLLVHSERLALA 623

Query: 423  YGLISVPTDTAIVIFKNLRACKDCHDFAKHVSVITGREIVVRDSSRFHHFKSGECSCGDY 244
            +GLIS P+   +V+FKNLRACKDCHDF K VS+ITGREIVVRDS RFHHFK GECSC DY
Sbjct: 624  FGLISTPSSAPVVVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDY 683

Query: 243  W 241
            W
Sbjct: 684  W 684


>ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
            chloroplastic-like [Glycine max]
          Length = 765

 Score =  355 bits (911), Expect = 9e-96
 Identities = 159/241 (65%), Positives = 200/241 (82%)
 Frame = -2

Query: 963  YGVEPTVDHYDCMIDIYARAGLLKKAYELIKSMPFQPDAMSWKSLLGGCSVHRNFELGKI 784
            YGV PT+DHY+CMID+Y+RAGLL++A E+I+S+PF+PD MSWKSLLGGC  HRN E+G I
Sbjct: 525  YGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMI 584

Query: 783  AAEELLRVDPEDIAAYVLMFNLYVSSGKWNEAADVRRRMAERDLRKEVGCSWITIKGQVH 604
            AA+ + R+DP D A YV+MFNLY  +GKW+EAA  R+ MAER+LRKEV CSWI +KG+VH
Sbjct: 585  AADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVH 644

Query: 603  RFIVGDKYHPQTEAIYSKLNELKFPRTKNEHVILSEDDAGNNLSERRDQLLDHSERLAIA 424
            RF+VGD++HPQTE IYSKL EL F   K++  +L+E++A  + +ER++QLLDHSERLAIA
Sbjct: 645  RFVVGDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLDHSERLAIA 704

Query: 423  YGLISVPTDTAIVIFKNLRACKDCHDFAKHVSVITGREIVVRDSSRFHHFKSGECSCGDY 244
            YGLI    DT I++FKN R+CKDCHDFAK VS++TGRE+VVRD +RFHH  SGECSC DY
Sbjct: 705  YGLICTAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDY 764

Query: 243  W 241
            W
Sbjct: 765  W 765


>ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
            chloroplastic-like [Glycine max]
          Length = 753

 Score =  351 bits (901), Expect = 1e-94
 Identities = 161/241 (66%), Positives = 196/241 (81%)
 Frame = -2

Query: 963  YGVEPTVDHYDCMIDIYARAGLLKKAYELIKSMPFQPDAMSWKSLLGGCSVHRNFELGKI 784
            YGV PT+DHY+CMIDIY+RAGLL +A E+I+SMPF+PD MSWKSLLGGC   RN E+G I
Sbjct: 513  YGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMI 572

Query: 783  AAEELLRVDPEDIAAYVLMFNLYVSSGKWNEAADVRRRMAERDLRKEVGCSWITIKGQVH 604
            AA+ + R+DP D A YV+MFNLY  +GKW+EAA  R+ MAER+LRKEV CSWI +KG+VH
Sbjct: 573  AADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVH 632

Query: 603  RFIVGDKYHPQTEAIYSKLNELKFPRTKNEHVILSEDDAGNNLSERRDQLLDHSERLAIA 424
            RF+VGD++HPQTE IYSKL EL     K E  +L+E++A  + +ER+DQLLDHSERLAIA
Sbjct: 633  RFVVGDRHHPQTEQIYSKLKELNVSFKKGEERLLNEENALCDFTERKDQLLDHSERLAIA 692

Query: 423  YGLISVPTDTAIVIFKNLRACKDCHDFAKHVSVITGREIVVRDSSRFHHFKSGECSCGDY 244
            YGLI    DT I++FKN R+CKDCH+FAK VSV+TGRE+VVRD +RFHH  SGECSC DY
Sbjct: 693  YGLICTAADTPIMVFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNRFHHINSGECSCRDY 752

Query: 243  W 241
            W
Sbjct: 753  W 753


>emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  348 bits (893), Expect = 1e-93
 Identities = 161/242 (66%), Positives = 199/242 (82%), Gaps = 1/242 (0%)
 Frame = -2

Query: 963  YGVEPTVDHYDCMIDIYARAGLLKKAYELIKSMPFQPDAMSWKSLLGGCSVHRNFELGKI 784
            YGV+PT+DHYDCMID Y+RAGLL++A ELI  MPF+PDAMSWKSLLGGC  H + +LGKI
Sbjct: 521  YGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKI 580

Query: 783  AAEELLRVDPEDIAAYVLMFNLYVSSGKWNEAADVRRRMAERDLRKEVGCSWITIKGQVH 604
            AAE L R+DP D A Y+L+FNLY + GKW EA  VR+ MAER+L+KEV CSWI++KGQVH
Sbjct: 581  AAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVH 640

Query: 603  RFIVGDKYHPQTEAIYSKLNELKFPRTKNEHVILS-EDDAGNNLSERRDQLLDHSERLAI 427
            RF+VGD++HPQTEAIYSKL E K     +   +L+ EDD   +LS R++QLLDHSE+LAI
Sbjct: 641  RFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAI 700

Query: 426  AYGLISVPTDTAIVIFKNLRACKDCHDFAKHVSVITGREIVVRDSSRFHHFKSGECSCGD 247
            A+GLIS   +  I++FKNLRAC+DCH+F K VS++TGR+IVVRDS+RFHHFKSG+CSC D
Sbjct: 701  AFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCND 760

Query: 246  YW 241
            YW
Sbjct: 761  YW 762


>ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g13270, chloroplastic; Flags: Precursor
            gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis
            thaliana] gi|332004490|gb|AED91873.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  317 bits (813), Expect = 2e-84
 Identities = 151/243 (62%), Positives = 183/243 (75%), Gaps = 2/243 (0%)
 Frame = -2

Query: 963  YGVEPTVDHYDCMIDIYARAGLLKKAYELIKSMPFQPDAMSWKSLLGGCSVHRNFELGKI 784
            Y V PT+DHYDCMIDIYAR+GLL +A + +K+MPF+PDAMSWK  L GC  H+N ELG+I
Sbjct: 518  YNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEI 577

Query: 783  AAEELLRVDPEDIAAYVLMFNLYVSSGKWNEAADVRRRMAERDLRKEVGCSWITIKGQVH 604
            A EEL ++DPED A YVL FNLY  +GKW EAA++ + M ER L+KE+ CSWI  KG++H
Sbjct: 578  AGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIH 637

Query: 603  RFIVGDKYHPQTEAIYSKLNELKFPRTKNEHVILSEDDAGNNLSERRDQLLDHSERLAIA 424
            RFIVGDK+HPQT+ IY KL E            +  D    N++ERR+QLLDHSERLAIA
Sbjct: 638  RFIVGDKHHPQTQEIYEKLKEF--------DGFMEGDMFQCNMTERREQLLDHSERLAIA 689

Query: 423  YGLISV--PTDTAIVIFKNLRACKDCHDFAKHVSVITGREIVVRDSSRFHHFKSGECSCG 250
            +GLISV       I +FKNLRAC DCH+FAKHVS++TG EIV+RDS RFHHFK G+CSC 
Sbjct: 690  FGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCN 749

Query: 249  DYW 241
            DYW
Sbjct: 750  DYW 752