BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012478
         (972 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   228   2e-57
ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|2...   218   2e-54
ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-lik...   215   1e-53
ref|XP_003524428.1| PREDICTED: tRNA pseudouridine synthase A-lik...   212   1e-52
ref|NP_198390.2| tRNA pseudouridine synthase-like protein [Arabi...   206   9e-51

>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  228 bits (581), Expect = 2e-57
 Identities = 133/257 (51%), Positives = 156/257 (60%), Gaps = 19/257 (7%)
 Frame = -3

Query: 970 KAQDIEDAVNDAGPGKLRVISVSEVSRAFHPNFSAKWRRYIYVFPLNIEKEESSQHEDAE 791
           K QDIEDA+N A PGKLRVISVSEVSR FHPNFSAKWR Y Y+FPLN + ++  Q  + E
Sbjct: 191 KVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLN-DGDDGEQISENE 249

Query: 790 NDV-------------------FDGGKKNAFDDVHMALEDSGVFGDNYNTETRXXXXXXX 668
            D+                   ++GG+       ++  +D G F       T        
Sbjct: 250 MDIQKISFNEKYGEQGSECPAQYNGGENTE----NLIFDDDGEFESRKKPST-------- 297

Query: 667 XXXXXVDLLLRQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARATEIKLRSDAKDQEG 488
                VD LLRQLEGKLLSYK+FARDTKASRNIGPPTECFVFHARATE +L+  + D EG
Sbjct: 298 FSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQF-SDDGEG 356

Query: 487 TKAMCIELVANRFLRKMVRVLVXXXXXXXXXXXXXXALVKLMDXXXXXXXXXXXXADGLC 308
           TK MCIELVANRFLRKMVRVLV              AL+KLMD             DGLC
Sbjct: 357 TKVMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLC 416

Query: 307 LFDVGYTDFNPKACLIQ 257
           L DVG+T+F+P+ C I+
Sbjct: 417 LIDVGFTEFDPQICFIR 433


>ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1|
           predicted protein [Populus trichocarpa]
          Length = 428

 Score =  218 bits (555), Expect = 2e-54
 Identities = 123/248 (49%), Positives = 155/248 (62%), Gaps = 11/248 (4%)
 Frame = -3

Query: 970 KAQDIEDAVNDAGPGKLRVISVSEVSRAFHPNFSAKWRRYIYVFPLNIEK---------- 821
           K  +IEDA+ND  PGK+RV S+SEVSRAFHPNFSAKWRRY+Y+FPLN  +          
Sbjct: 188 KPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGG 247

Query: 820 -EESSQHEDAENDVFDGGKKNAFDDVHMALEDSGVFGDNYNTETRXXXXXXXXXXXXVDL 644
            E  S HE+ E    + G+  + ++V     ++ +  D    E +            V+ 
Sbjct: 248 IENFSSHENCEKQRNECGELASEENV-----ENSIISD--EDELQGAKKPRSFSVCRVNQ 300

Query: 643 LLRQLEGKLLSYKMFARDTKASRNIGPPTECFVFHARATEIKLRSDAKDQEGTKAMCIEL 464
           LL+QLEGKLLSYKMFARDTKASRN+GPPTECF++HARATE +L S    ++G + MC+EL
Sbjct: 301 LLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS-PDHEKGIRVMCVEL 359

Query: 463 VANRFLRKMVRVLVXXXXXXXXXXXXXXALVKLMDXXXXXXXXXXXXADGLCLFDVGYTD 284
           +ANRFLRKMVRVLV              AL+KLMD             DGLCL DVGYT+
Sbjct: 360 IANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTE 419

Query: 283 FNPKACLI 260
           F+P+ CLI
Sbjct: 420 FDPRNCLI 427


>ref|XP_003532450.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 404

 Score =  215 bits (548), Expect = 1e-53
 Identities = 126/237 (53%), Positives = 144/237 (60%)
 Frame = -3

Query: 970 KAQDIEDAVNDAGPGKLRVISVSEVSRAFHPNFSAKWRRYIYVFPLNIEKEESSQHEDAE 791
           K +DIEDA+N A PGKLRVISVSEVSR FHPNFSAKWRRY+Y+FPL          ++ E
Sbjct: 180 KPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQSSDNGE 239

Query: 790 NDVFDGGKKNAFDDVHMALEDSGVFGDNYNTETRXXXXXXXXXXXXVDLLLRQLEGKLLS 611
              +D  K N   D   A +D          E              V+ LLR+LEGKLLS
Sbjct: 240 --FYDSFKYNEIHD--SASKD----------ELENEKKSYAFSISKVNRLLRKLEGKLLS 285

Query: 610 YKMFARDTKASRNIGPPTECFVFHARATEIKLRSDAKDQEGTKAMCIELVANRFLRKMVR 431
           YKMFARDTKASRN GPPTECFV+HARA E+KL +    +E TK MC+ELVANRFLRKMVR
Sbjct: 286 YKMFARDTKASRNDGPPTECFVYHARAMEVKLPATDHGEE-TKVMCVELVANRFLRKMVR 344

Query: 430 VLVXXXXXXXXXXXXXXALVKLMDXXXXXXXXXXXXADGLCLFDVGYTDFNPKACLI 260
           VLV              AL+KLMD             DGLCL DVGYT+F P+ C I
Sbjct: 345 VLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFEPQKCFI 401


>ref|XP_003524428.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 387

 Score =  212 bits (539), Expect = 1e-52
 Identities = 123/237 (51%), Positives = 145/237 (61%)
 Frame = -3

Query: 970 KAQDIEDAVNDAGPGKLRVISVSEVSRAFHPNFSAKWRRYIYVFPLNIEKEESSQHEDAE 791
           K +DIEDA+N A PGK RVISVSEVSR FHPNFSAKWRRY+Y+FPL      + ++ D  
Sbjct: 163 KPRDIEDAINHATPGKFRVISVSEVSRVFHPNFSAKWRRYLYIFPLT-----NGRYTDQS 217

Query: 790 NDVFDGGKKNAFDDVHMALEDSGVFGDNYNTETRXXXXXXXXXXXXVDLLLRQLEGKLLS 611
           ND         ++++H    DS         E              V+ LLR+LEGKLLS
Sbjct: 218 NDNGHFYNSCKYNEIH----DSA-----SKDELENGKKSYMFSTSKVNRLLRKLEGKLLS 268

Query: 610 YKMFARDTKASRNIGPPTECFVFHARATEIKLRSDAKDQEGTKAMCIELVANRFLRKMVR 431
           YKMFARDTKASRN GPPTECFV+HARA E+K  +    +E TK MC+ELVA+RFLRKMVR
Sbjct: 269 YKMFARDTKASRNDGPPTECFVYHARAMEVKPPTTDHGEE-TKVMCVELVADRFLRKMVR 327

Query: 430 VLVXXXXXXXXXXXXXXALVKLMDXXXXXXXXXXXXADGLCLFDVGYTDFNPKACLI 260
           VLV              AL+KLMD             DGLCL DVGYT+F+PK C I
Sbjct: 328 VLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPKKCFI 384


>ref|NP_198390.2| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana]
           gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis
           thaliana] gi|30725698|gb|AAP37871.1| At5g35400
           [Arabidopsis thaliana] gi|332006580|gb|AED93963.1| tRNA
           pseudouridine synthase-like protein [Arabidopsis
           thaliana]
          Length = 420

 Score =  206 bits (523), Expect = 9e-51
 Identities = 117/242 (48%), Positives = 151/242 (62%), Gaps = 9/242 (3%)
 Frame = -3

Query: 958 IEDAVNDAGPGKLRVISVSEVSRAFHPNFSAKWRRYIYVFPLNIEKEESSQHEDAENDVF 779
           IEDA+N    GKLRV+S+S+VSR+FHPNFSAKWRRY+Y+FPL+  +      E+ EN +F
Sbjct: 180 IEDAINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIF 239

Query: 778 DGGKK---------NAFDDVHMALEDSGVFGDNYNTETRXXXXXXXXXXXXVDLLLRQLE 626
           D  KK            ++V M+ ED  +  +  +                VD LL+ L+
Sbjct: 240 DENKKKQRNGLLSEEIAEEVIMS-EDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQ 298

Query: 625 GKLLSYKMFARDTKASRNIGPPTECFVFHARATEIKLRSDAKDQEGTKAMCIELVANRFL 446
           GK+LSYKMFARDTKA+RN GPPTECF++HARA EI+L S +   EG + MC+ELVANRFL
Sbjct: 299 GKVLSYKMFARDTKAARNEGPPTECFMYHARAAEIRL-SSSDCVEGRRVMCVELVANRFL 357

Query: 445 RKMVRVLVXXXXXXXXXXXXXXALVKLMDXXXXXXXXXXXXADGLCLFDVGYTDFNPKAC 266
           RKMVRVLV              AL+KL++            ++GLCLFDVGYTDF+P+  
Sbjct: 358 RKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAPSEGLCLFDVGYTDFDPQTS 417

Query: 265 LI 260
           LI
Sbjct: 418 LI 419