BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012410
         (1175 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|2...   259   1e-66
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   259   1e-66
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   251   2e-64
ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabi...   250   4e-64
gb|AFK38034.1| unknown [Lotus japonicus]                              250   6e-64

>ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|222873254|gb|EEF10385.1|
            predicted protein [Populus trichocarpa]
          Length = 206

 Score =  259 bits (661), Expect = 1e-66
 Identities = 140/215 (65%), Positives = 157/215 (73%)
 Frame = -3

Query: 1008 MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 829
            M +TEEEI RL RIRKTV+QML DRGY VGD E ++T+ QF  +YG+NMKREDLVI+KTK
Sbjct: 1    MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 828  KNDPSDQIYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILVV 649
            +ND SDQIYV                                             AILVV
Sbjct: 61   RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFR------------------AILVV 102

Query: 648  QQNLTPFARTCIAEISSKFNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVK 469
            QQNLTPFARTCI EIS+KF+LEVFQEAELLVNIKEHVLVPEHQVL+ +EKKTLLERYTVK
Sbjct: 103  QQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVK 162

Query: 468  ETQLPRIQLSDPVARYYGLQRGQVVKIIRPSETAG 364
            ETQLPRIQ++DP+ARYYGL+RGQVVKIIRPSETAG
Sbjct: 163  ETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAG 197


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1
            isoform 1 [Vitis vinifera]
            gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
            RNA polymerases I, II, and III subunit RPABC1 isoform 2
            [Vitis vinifera]
          Length = 206

 Score =  259 bits (661), Expect = 1e-66
 Identities = 139/215 (64%), Positives = 158/215 (73%)
 Frame = -3

Query: 1008 MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 829
            M+ +EEEI+RLFRIRKTV+QML DRGY VGD E  +TK+QF+ ++G+NMKREDLVI+K K
Sbjct: 1    MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 828  KNDPSDQIYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILVV 649
            + D SDQIYV                                             AILVV
Sbjct: 61   RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFR------------------AILVV 102

Query: 648  QQNLTPFARTCIAEISSKFNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVK 469
            QQNLTPFARTCI EIS+KF+LEVFQEAELLVNIKEHVLVPEHQVLT +EKKTLLERYTVK
Sbjct: 103  QQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVK 162

Query: 468  ETQLPRIQLSDPVARYYGLQRGQVVKIIRPSETAG 364
            ETQLPRIQ+SDP+ARY+GL+RGQVVKIIRPSETAG
Sbjct: 163  ETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAG 197


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
            gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
            lyrata subsp. lyrata]
          Length = 205

 Score =  251 bits (642), Expect = 2e-64
 Identities = 132/213 (61%), Positives = 156/213 (73%)
 Frame = -3

Query: 1002 MTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTKKN 823
            +TEEEI RL+RI+KT++QML DRGY + D+E  +TK QF++++GDNMKREDLV  K K+N
Sbjct: 2    LTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRN 61

Query: 822  DPSDQIYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILVVQQ 643
            D SDQ+Y+                                             AILVVQQ
Sbjct: 62   DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYR------------------AILVVQQ 103

Query: 642  NLTPFARTCIAEISSKFNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKET 463
            NLTPFARTCI+EISSKF+LEVFQEAE+LVNIKEHVLVPEHQVLT +EKKTLLERYTVKET
Sbjct: 104  NLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKET 163

Query: 462  QLPRIQLSDPVARYYGLQRGQVVKIIRPSETAG 364
            QLPRIQ++DP+ARY+GL+RGQVVKIIRPSETAG
Sbjct: 164  QLPRIQVTDPIARYFGLKRGQVVKIIRPSETAG 196


>ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
            gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II
            and III 24.3 kDa subunit [Arabidopsis thaliana]
            gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
            [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
            polymerase I, II and III 24.3 kDa subunit [Arabidopsis
            thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I, II
            and III 24.3 kDa subunit [Arabidopsis thaliana]
            gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
            24.3 kDa subunit [Arabidopsis thaliana]
            gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
            24.3 kDa subunit [Arabidopsis thaliana]
            gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
            II subunit E [Arabidopsis thaliana]
          Length = 205

 Score =  250 bits (639), Expect = 4e-64
 Identities = 131/213 (61%), Positives = 156/213 (73%)
 Frame = -3

Query: 1002 MTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTKKN 823
            +TEEE+ RL+RI+KT++QML DRGY + D+E  +TK QF++++GDNMKREDLV  K K+N
Sbjct: 2    LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61

Query: 822  DPSDQIYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILVVQQ 643
            D SDQ+Y+                                             AILVVQQ
Sbjct: 62   DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFR------------------AILVVQQ 103

Query: 642  NLTPFARTCIAEISSKFNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVKET 463
            NLTPFARTCI+EISSKF+LEVFQEAE+LVNIKEHVLVPEHQVLT +EKKTLLERYTVKET
Sbjct: 104  NLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKET 163

Query: 462  QLPRIQLSDPVARYYGLQRGQVVKIIRPSETAG 364
            QLPRIQ++DP+ARY+GL+RGQVVKIIRPSETAG
Sbjct: 164  QLPRIQVTDPIARYFGLKRGQVVKIIRPSETAG 196


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  250 bits (638), Expect = 6e-64
 Identities = 134/215 (62%), Positives = 154/215 (71%)
 Frame = -3

Query: 1008 MAMTEEEIARLFRIRKTVLQMLDDRGYLVGDAEKELTKYQFLQRYGDNMKREDLVISKTK 829
            MA+TEE+I +L RIRKTV+QML DR YLVGD E  +++++F  +YGDNMKREDL I+KTK
Sbjct: 1    MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTK 60

Query: 828  KNDPSDQIYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILVV 649
            K+ PSDQIYV                                             AILV 
Sbjct: 61   KDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFR------------------AILVC 102

Query: 648  QQNLTPFARTCIAEISSKFNLEVFQEAELLVNIKEHVLVPEHQVLTKDEKKTLLERYTVK 469
            Q NLTPFA+TCI+E+SSKF LEVFQEAELLVNIKEHVLVPEHQ+L + EKKTLLERYTVK
Sbjct: 103  QSNLTPFAKTCISEMSSKFQLEVFQEAELLVNIKEHVLVPEHQILNETEKKTLLERYTVK 162

Query: 468  ETQLPRIQLSDPVARYYGLQRGQVVKIIRPSETAG 364
            ETQLPRIQ++DPVARYYGL+RGQVVKIIRPSETAG
Sbjct: 163  ETQLPRIQITDPVARYYGLKRGQVVKIIRPSETAG 197