BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00012231
         (586 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    89   5e-16
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                86   3e-15
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    82   5e-14
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript...    82   9e-14
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            82   9e-14

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
 Frame = +3

Query: 45   WDAIRFRLPEVPWHNSVWHKLQIKRYAVHEWLLCLNRLATLDR*ASFGITNLHHCYLCAG 224
            W+ +R   P+  W+  VW      +Y+   WL   NRL+T DR  ++    L  C LC  
Sbjct: 1342 WNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNN 1401

Query: 225  GSETANHLFISCPYSSFIMEKLTTLTRVSMHAITWTDLMIAWGRIEDTVRRHLMLL--IA 398
              ET +HLF SC Y+S++ E LT     + ++  W  L        +  R HL L   + 
Sbjct: 1402 AEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLL-CTSNLPRDHLFLFRYVF 1460

Query: 399  QIFSYHIWRERNARAH 446
            Q   YHIWRERNAR H
Sbjct: 1461 QASIYHIWRERNARRH 1476


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
 Frame = +3

Query: 33   TWHIWDAIRFRLPEVPWHNSVWHKLQIKRYAVHEWLLCLNRLATLDR*ASFGITN--LHH 206
            TWH+   I+     V WH  VW +    +YA+  WL   NRL T DR   +  +     +
Sbjct: 690  TWHL---IKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGN 746

Query: 207  CYLCAGGSETANHLFISCPYSSFIMEKLTTLTRVSMHAITWTDLMIAWG-RIEDTVRRHL 383
            C LC   S+T  HLF SC Y+S +   L      + ++  W+ L+       +D V   L
Sbjct: 747  CVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFL 806

Query: 384  MLLIAQIFSYHIWRERNARAHEKGCFGPLKLLDGIIADVKTKNYASRWFLSSACIYDYSF 563
               I Q   YH+WRERN R H+     P  ++  I  D +T+N  +    S    YD +F
Sbjct: 807  TRYIFQATIYHVWRERNGRRHDAAPNTPATVIGWI--DKQTRNQITIIRQSGDRRYDKAF 864


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score = 82.4 bits (202), Expect = 5e-14
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
 Frame = +3

Query: 45   WDAIRFRLPEVPWHNSVWHKLQIKRYAVHEWLLCLNRLATLDR*ASFGITNLHHCYLCAG 224
            W+A+R + P   W  SVW K  + ++A + W+  LNRL T  R A++G+T    C LC+ 
Sbjct: 910  WEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSS 969

Query: 225  GSETANHLFISCPYSSFIMEKLTTLTRVSMHAI--TWTDLMIAWGRIEDTVRRHLMLLI- 395
              E+ +HL + C +S+ I  KL         AI  +W +L ++W RI  +    L+  I 
Sbjct: 970  RPESRDHLLLYCVFSAVIW-KLVFFRLTPSQAIFNSWAEL-LSWTRINSSKAPSLLRKIA 1027

Query: 396  AQIFSYHIWRERNARAHEKGCFGP 467
            AQ   +H+W++RN   H      P
Sbjct: 1028 AQASVFHLWKQRNNVLHNSIFISP 1051


>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 289

 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
 Frame = +3

Query: 9   GVPLRKLKTWHIWDAIRFRLPEVPWHNSVWHKLQIKRYAVHEWLLCLNRLATLDR*ASFG 188
           GV  +   +   WDAIR R PE+ W  +VW K  + ++A + W+  L+RL T  R AS+G
Sbjct: 103 GVVCQGFSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWG 162

Query: 189 ITNLHHCYLCAGGSETANHLFISCPYSSFIME-KLTTLTRVSMHAITWTDLMIAWGRIED 365
                 C LC   +E+ +HL  SC +++ +     + L        +W +L ++W R   
Sbjct: 163 HIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAEL-LSWMRSSS 221

Query: 366 TVRRHLMLLI-AQIFSYHIWRERNARAHEKGCFGPL---KLLDGIIADVKTKNY-ASRW 527
           +    L+  + A    Y+IWR+RN   H      P+   K++D  I ++ +  Y   RW
Sbjct: 222 SSAPSLLRKVSAHAIIYNIWRQRNNVLHNNLRIAPIIIFKIVDREIRNIISSRYHRKRW 280


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
 Frame = +3

Query: 45   WDAIRFRLPEVPWHNSVWHKLQIKRYAVHEWLLCLNRLATLDR*ASFGITNLHHCYLCAG 224
            W+ +R R P   W  SVW K  + ++A + W   LNRL T  R  S+G+ +   C LC+ 
Sbjct: 898  WEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSF 957

Query: 225  GSETANHLFISCPYSSFIMEKL-TTLTRVSMHAITWTDLMIAWGRIEDTVRRHLM-LLIA 398
             +ET +HL + C +SS +   +   L        TW +L ++W R        L+  ++A
Sbjct: 958  DTETRDHLLLLCDFSSQVWRMVFLRLCPRQRLLCTWAEL-LSWTRQSTAAAPSLLRKVVA 1016

Query: 399  QIFSYHIWRERNARAHEK---GCFGPLKLLDGIIADV-KTKNYASRW 527
            Q+  Y++WR+RN   H      C    +L+D  + +V  ++ +  RW
Sbjct: 1017 QLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELRNVILSRRHKRRW 1063