BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00011794
         (1100 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s...   305   1e-80
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s...   304   3e-80
ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polype...   263   6e-68
ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp....   261   2e-67
ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containin...   261   3e-67

>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
           vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  305 bits (781), Expect = 1e-80
 Identities = 142/191 (74%), Positives = 164/191 (85%)
 Frame = -3

Query: 903 FYLSEIEHTMRVPPHLLNLPLTEAIQGELERLFLDKVVANLGLVVSVYDIKSINGGFLFP 724
           FYLS IEHT+R+PPHLL+LPL EAI+GELE LFLDKV+ANLGL +SVYDI+SI+GGF+FP
Sbjct: 2   FYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVFP 61

Query: 723 SDGASTYTVNFRLVVFRPFVGEVVTAKLLESTANGLRLSLGFFDDIYVPAHLMPNPSHFE 544
            DGASTYTV FRLV+FRPFVGE++TAKL ES ANGLRLSLGFFDDIY+P HLMPNP H E
Sbjct: 62  GDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHCE 121

Query: 543 ADSVNKNQVSWIWEYQEENYAIYGVDEIRFRVNNISYPPIPIEADKESNRFAPMVITGSL 364
            +   K QV WIW+YQE+ + I G+DEIRF+V ++SYPPIP+E  KES  FAPMVI GSL
Sbjct: 122 PNPEKKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGSL 181

Query: 363 DADGLGPVSWW 331
           D DGLGPVSWW
Sbjct: 182 DYDGLGPVSWW 192


>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
           vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  304 bits (778), Expect = 3e-80
 Identities = 141/191 (73%), Positives = 166/191 (86%)
 Frame = -3

Query: 903 FYLSEIEHTMRVPPHLLNLPLTEAIQGELERLFLDKVVANLGLVVSVYDIKSINGGFLFP 724
           F+LS IEHT+R+PPHLL+LPL EAI+GELE LFLDKV+ANLGL +SVYDI+SI+GGF+FP
Sbjct: 2   FFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVFP 61

Query: 723 SDGASTYTVNFRLVVFRPFVGEVVTAKLLESTANGLRLSLGFFDDIYVPAHLMPNPSHFE 544
            DGASTYTV FRLV+FRPFVGE++TAKL ES ANGL+LSLGFFDDIY+P HLMPNP H E
Sbjct: 62  GDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHCE 121

Query: 543 ADSVNKNQVSWIWEYQEENYAIYGVDEIRFRVNNISYPPIPIEADKESNRFAPMVITGSL 364
            D  NK+QV WIW+YQE+ + I G+DEIRF+V ++SYPPIP+E  KES  FAPM+I GSL
Sbjct: 122 PDPENKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGSL 181

Query: 363 DADGLGPVSWW 331
           D DGLGPVSWW
Sbjct: 182 DYDGLGPVSWW 192


>ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
           [Ricinus communis] gi|223539824|gb|EEF41404.1|
           DNA-directed RNA polymerase III 25 kD polypeptide,
           putative [Ricinus communis]
          Length = 194

 Score =  263 bits (672), Expect = 6e-68
 Identities = 122/195 (62%), Positives = 158/195 (81%), Gaps = 4/195 (2%)
 Frame = -3

Query: 903 FYLSEIEHTMRVPPHLLNLPLTEAIQGELERLFLDKVVANLGLVVSVYDIKSINGGFLFP 724
           FYLSEIEHT+R+PP LL+LPL +A++ ELE +FLDKV+ANLGL +SVYD+  I+GGF+FP
Sbjct: 2   FYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIFP 61

Query: 723 SDGASTYTVNFRLVVFRPFVGEVVTAKLLESTANGLRLSLGFFDDIYVPAHLMPNPSHFE 544
            DGASTYTV FR+VVFRPFVGE++ AKL ES  +GLRLSLGFFDDIY+P+H +P PS+ +
Sbjct: 62  GDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYSQ 121

Query: 543 ADSVNKNQVSWIWEYQEEN----YAIYGVDEIRFRVNNISYPPIPIEADKESNRFAPMVI 376
            D  N+ Q  WIWE+  E+    + I G+DEI+FRV+++ YPP+P+E  ++   FAPMVI
Sbjct: 122 QDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLE--QQEKPFAPMVI 179

Query: 375 TGSLDADGLGPVSWW 331
           TGS+D +GLGPVSWW
Sbjct: 180 TGSIDDEGLGPVSWW 194


>ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297335460|gb|EFH65877.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 204

 Score =  261 bits (667), Expect = 2e-67
 Identities = 123/193 (63%), Positives = 154/193 (79%), Gaps = 2/193 (1%)
 Frame = -3

Query: 903 FYLSEIEHTMRVPPHLLNLPLTEAIQGELERLFLDKVVANLGLVVSVYDIKSINGGFLFP 724
           FYLSE+EH++RVPPHLLNLPL +AI+  L+ +FLDKV+A+LGL VSVYDIKSI GGF+ P
Sbjct: 2   FYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSVYDIKSIEGGFVLP 61

Query: 723 SDGASTYTVNFRLVVFRPFVGEVVTAKLLESTANGLRLSLGFFDDIYVPAHLMPNPSHFE 544
            DGA+TY V FR+VVFRPFVGEV+ AK  ES +NGLRL+LGFFDDIYVPA LMP P+  E
Sbjct: 62  GDGAATYKVGFRIVVFRPFVGEVIAAKFKESDSNGLRLTLGFFDDIYVPAPLMPKPNRCE 121

Query: 543 ADSVNKNQVSWIWEYQE--ENYAIYGVDEIRFRVNNISYPPIPIEADKESNRFAPMVITG 370
            D  N+ Q+ W+WEY E  E++ I    +I+FRV +ISYP +P E  +++  FAPMV+TG
Sbjct: 122 PDPYNRKQMIWVWEYGEPLEDFIIDDSCQIKFRVESISYPSVPTERAEDAKPFAPMVVTG 181

Query: 369 SLDADGLGPVSWW 331
           ++D DGLGPVSWW
Sbjct: 182 NMDEDGLGPVSWW 194


>ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
           [Arabidopsis thaliana]
           gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical
           protein [Arabidopsis thaliana]
           gi|17529108|gb|AAL38764.1| putative RNA polymerase
           [Arabidopsis thaliana] gi|23296904|gb|AAN13199.1|
           putative RNA polymerase [Arabidopsis thaliana]
           gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7
           N-terminal domain-containing protein [Arabidopsis
           thaliana]
          Length = 204

 Score =  261 bits (666), Expect = 3e-67
 Identities = 121/193 (62%), Positives = 153/193 (79%), Gaps = 2/193 (1%)
 Frame = -3

Query: 903 FYLSEIEHTMRVPPHLLNLPLTEAIQGELERLFLDKVVANLGLVVSVYDIKSINGGFLFP 724
           FYLSE+EH++RVPPHLLNLPL +AI+  L+ +FLDKV+A+LGL VS+YDIKS+ GGF+ P
Sbjct: 2   FYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVLP 61

Query: 723 SDGASTYTVNFRLVVFRPFVGEVVTAKLLESTANGLRLSLGFFDDIYVPAHLMPNPSHFE 544
            DGA+TY V  R+VVFRPFVGEV+ AK  ES ANGLRL+LGFFDDIYVPA LMP P+  E
Sbjct: 62  GDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRCE 121

Query: 543 ADSVNKNQVSWIWEYQE--ENYAIYGVDEIRFRVNNISYPPIPIEADKESNRFAPMVITG 370
            D  N+ Q+ W+WEY E  E+Y +    +I+FRV +ISYP +P E  +++  FAPMV+TG
Sbjct: 122 PDPYNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVTG 181

Query: 369 SLDADGLGPVSWW 331
           ++D DGLGPVSWW
Sbjct: 182 NMDDDGLGPVSWW 194