BLASTX nr result

ID: Cnidium21_contig00011356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00011356
         (1623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27406.3| unnamed protein product [Vitis vinifera]              114   1e-41
ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pen...   114   9e-41
ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...   106   8e-38
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...   110   1e-37
ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   100   2e-35

>emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  114 bits (286), Expect(4) = 1e-41
 Identities = 57/90 (63%), Positives = 68/90 (75%)
 Frame = -3

Query: 928 RSEMVQEAVAFLRETERKDTRTNVVSFNILMSRFSKLGYVDISKKKLCLMFKCGLLHDAY 749
           R   +Q+AV FLRET  ++   +VVSFN LMS F K+G VD++K   C+M K GLL D Y
Sbjct: 247 RQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVY 306

Query: 748 SYNILIHGLWVAGSVEEALEFTNDMEKHGV 659
           SYNIL+HGL VAGS+EEALEFTNDME HGV
Sbjct: 307 SYNILLHGLCVAGSMEEALEFTNDMENHGV 336



 Score = 72.4 bits (176), Expect(4) = 1e-41
 Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 27/113 (23%)
 Frame = -1

Query: 483 GLSTDIVTYNILVCGHCQVGNIDEGLKLHEEMLSQGMRXXXXXXXXXXXXLCK------- 325
           GL+ D+VTY IL+CGHCQ+GNI+E  KL E+MLSQG++            LCK       
Sbjct: 370 GLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 324 --------------------KCEVRRAIQLY*EMCRK*VFPDAFSQRAILLAL 226
                               +  V  AI+LY EMC K ++P++F   AI+  L
Sbjct: 430 VILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGL 482



 Score = 30.8 bits (68), Expect(4) = 1e-41
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -2

Query: 542 GVRLLGMMSGAGKIVQRML 486
           G R+LG++SGA K+VQRML
Sbjct: 349 GFRILGLISGAWKVVQRML 367



 Score = 20.8 bits (42), Expect(4) = 1e-41
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 226 EKGTIADARYFFD 188
           EKG I++A+ +FD
Sbjct: 484 EKGAISEAQMYFD 496


>ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  114 bits (286), Expect(4) = 9e-41
 Identities = 57/90 (63%), Positives = 68/90 (75%)
 Frame = -3

Query: 928 RSEMVQEAVAFLRETERKDTRTNVVSFNILMSRFSKLGYVDISKKKLCLMFKCGLLHDAY 749
           R   +Q+AV FLRET  ++   +VVSFN LMS F K+G VD++K   C+M K GLL D Y
Sbjct: 247 RQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVY 306

Query: 748 SYNILIHGLWVAGSVEEALEFTNDMEKHGV 659
           SYNIL+HGL VAGS+EEALEFTNDME HGV
Sbjct: 307 SYNILLHGLCVAGSMEEALEFTNDMENHGV 336



 Score = 69.7 bits (169), Expect(4) = 9e-41
 Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 35/121 (28%)
 Frame = -1

Query: 483 GLSTDIVTYNILVCGHCQVGNIDEGLKLHEEMLSQGMRXXXXXXXXXXXXLCKK------ 322
           GL+ D+VTY IL+CGHCQ+GNI+E  KL E+MLSQG++            LCK       
Sbjct: 370 GLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEA 429

Query: 321 --------------------------CE---VRRAIQLY*EMCRK*VFPDAFSQRAILLA 229
                                     C+   V  AI+LY EMC K ++P++F   AI+  
Sbjct: 430 VILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISG 489

Query: 228 L 226
           L
Sbjct: 490 L 490



 Score = 30.8 bits (68), Expect(4) = 9e-41
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -2

Query: 542 GVRLLGMMSGAGKIVQRML 486
           G R+LG++SGA K+VQRML
Sbjct: 349 GFRILGLISGAWKVVQRML 367



 Score = 20.8 bits (42), Expect(4) = 9e-41
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 226 EKGTIADARYFFD 188
           EKG I++A+ +FD
Sbjct: 492 EKGAISEAQMYFD 504


>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score =  106 bits (265), Expect(4) = 8e-38
 Identities = 51/85 (60%), Positives = 65/85 (76%)
 Frame = -3

Query: 913 QEAVAFLRETERKDTRTNVVSFNILMSRFSKLGYVDISKKKLCLMFKCGLLHDAYSYNIL 734
           ++AV FLR+ + K+   +VVSFN +MSR+ KLG  D++K   C+M K G+L D YSYNIL
Sbjct: 167 RDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNIL 226

Query: 733 IHGLWVAGSVEEALEFTNDMEKHGV 659
           IHGL VAGS+EEALE TNDMEK G+
Sbjct: 227 IHGLIVAGSMEEALELTNDMEKQGL 251



 Score = 67.4 bits (163), Expect(4) = 8e-38
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 36/127 (28%)
 Frame = -1

Query: 486 KGLSTDIVTYNILVCGHCQVGNIDEGLKLHEEMLSQGMRXXXXXXXXXXXXLCKKCEV-- 313
           +GL  D+VTY +L+CGHCQ+GNI+E L+L  ++LS G +            LCK+ +V  
Sbjct: 285 EGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDE 344

Query: 312 ---------------------------------RRAIQLY*EMCRK*VFPDAFSQRAILL 232
                                            ++AIQLY EMC   +FP++F+   IL 
Sbjct: 345 ALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILK 404

Query: 231 AL-RKGL 214
            L  KG+
Sbjct: 405 GLCEKGM 411



 Score = 28.5 bits (62), Expect(4) = 8e-38
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 542 GVRLLGMMSGAGKIVQRML 486
           G  LLG+MSGA +I+Q+ML
Sbjct: 264 GFHLLGLMSGAREIIQKML 282



 Score = 23.5 bits (49), Expect(4) = 8e-38
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 226 EKGTIADARYFFDRELSRN 170
           EKG ++DAR +FD  +  N
Sbjct: 408 EKGMLSDARMYFDSLIMSN 426


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score =  110 bits (274), Expect(3) = 1e-37
 Identities = 52/90 (57%), Positives = 68/90 (75%)
 Frame = -3

Query: 928 RSEMVQEAVAFLRETERKDTRTNVVSFNILMSRFSKLGYVDISKKKLCLMFKCGLLHDAY 749
           R    Q+AV F ++TE K+ + +VVSFN +MSR+ KLG+VD++K   C+M K GLL DAY
Sbjct: 258 RQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAY 317

Query: 748 SYNILIHGLWVAGSVEEALEFTNDMEKHGV 659
           SYNILIHGL +AGS+ EAL+  NDME HG+
Sbjct: 318 SYNILIHGLCIAGSMGEALDLKNDMENHGL 347



 Score = 68.2 bits (165), Expect(3) = 1e-37
 Identities = 37/101 (36%), Positives = 56/101 (55%)
 Frame = -1

Query: 486 KGLSTDIVTYNILVCGHCQVGNIDEGLKLHEEMLSQGMRXXXXXXXXXXXXLCKKCEVRR 307
           KG + ++VTY +L+CGHCQ+GN++E LKL++EM+S G +            LCK  +V  
Sbjct: 380 KGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDV 439

Query: 306 AIQLY*EMCRK*VFPDAFSQRAILLALRKGL*QMQDIFLIE 184
           A +L+ EM    + PD  +   ++  L K     Q I L E
Sbjct: 440 AFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYE 480



 Score = 27.3 bits (59), Expect(3) = 1e-37
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 542 GVRLLGMMSGAGKIVQRML 486
           G RLLG+++GA  I+Q+ML
Sbjct: 360 GFRLLGLINGAWNIIQKML 378


>ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  100 bits (250), Expect(3) = 2e-35
 Identities = 46/86 (53%), Positives = 68/86 (79%)
 Frame = -3

Query: 916 VQEAVAFLRETERKDTRTNVVSFNILMSRFSKLGYVDISKKKLCLMFKCGLLHDAYSYNI 737
           +++A++FL ++  K    ++VS N +MS+F K+G +D+++   CLM K GLLHD++SYNI
Sbjct: 253 LEDAISFLHDSN-KVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNI 311

Query: 736 LIHGLWVAGSVEEALEFTNDMEKHGV 659
           L+HGL VAGS++EAL FT+DMEKHGV
Sbjct: 312 LLHGLCVAGSMDEALGFTDDMEKHGV 337



 Score = 67.8 bits (164), Expect(3) = 2e-35
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 35/124 (28%)
 Frame = -1

Query: 486 KGLSTDIVTYNILVCGHCQVGNIDEGLKLHEEMLSQGMRXXXXXXXXXXXXLCK------ 325
           +GL+ D+VTY  L+CGHCQ+GNI+E LKL +E LS+G +            LCK      
Sbjct: 370 QGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEE 429

Query: 324 --------------------------KCE---VRRAIQLY*EMCRK*VFPDAFSQRAILL 232
                                      C+   V+RA QLY +M  K  FP  F+QRA+LL
Sbjct: 430 ALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLL 489

Query: 231 ALRK 220
            L K
Sbjct: 490 GLFK 493



 Score = 29.3 bits (64), Expect(3) = 2e-35
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -2

Query: 542 GVRLLGMMSGAGKIVQRML 486
           G  LLG+MSGA K+VQ+ML
Sbjct: 350 GFLLLGLMSGARKVVQKML 368


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