BLASTX nr result
ID: Cnidium21_contig00010904
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00010904
(869 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003546179.1| PREDICTED: transcription initiation factor I... 144 2e-32
ref|XP_003594206.1| Transcription initiation factor IIF subunit ... 140 3e-31
ref|XP_003534809.1| PREDICTED: transcription initiation factor I... 140 3e-31
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|... 140 3e-31
ref|NP_001154225.2| transcription initiation factor IIF subunit ... 140 4e-31
>ref|XP_003546179.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Glycine max]
Length = 539
Score = 144 bits (364), Expect = 2e-32
Identities = 86/162 (53%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Frame = +1
Query: 1 KQKDAPKEEPVDNSPLKPISSAPXXXXXXXXXXXXXXXXMSTDDAKATSTTVPSKKAKTE 180
KQKDA KEEPVDNSP KP ++ P ++AK S T P KK K E
Sbjct: 380 KQKDALKEEPVDNSPSKPTATGPARGTPSSKSSKGKRKL--NEEAKP-SNTAPPKKVKVE 436
Query: 181 IDVK-PVKEEPVSTSKKNAPKKGSSSVPIESGSAV--AGPVTEDEIRAVLTQDKPVTTQD 351
+ K K+ S SK +AP KG+ + ++GS+ +GPV+E+EIRAVL Q PVTTQD
Sbjct: 437 NEPKVSTKDGNGSASKNSAPPKGTPPLSSKAGSSTTTSGPVSEEEIRAVLRQKTPVTTQD 496
Query: 352 LVAKFKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVLRE 477
LVAKFK+RLRC EDK AFA IL+RISKIQKTT+G S+V+LR+
Sbjct: 497 LVAKFKARLRCSEDKQAFAEILKRISKIQKTTSGASYVILRD 538
>ref|XP_003594206.1| Transcription initiation factor IIF subunit alpha [Medicago
truncatula] gi|87241158|gb|ABD33016.1| Transcription
Factor IIF, Rap30/Rap74, interaction [Medicago
truncatula] gi|355483254|gb|AES64457.1| Transcription
initiation factor IIF subunit alpha [Medicago
truncatula]
Length = 536
Score = 140 bits (354), Expect = 3e-31
Identities = 87/162 (53%), Positives = 110/162 (67%), Gaps = 3/162 (1%)
Frame = +1
Query: 1 KQKDAPKEEPVDNSPLKPISSAPXXXXXXXXXXXXXXXXMSTDDAKATSTTVPSKKAKTE 180
KQK+ PKEEPVDNSP KP ++ P + ++AK S +VP KK KTE
Sbjct: 379 KQKE-PKEEPVDNSPSKPTATGPARGTPTSKSSKAKRK--ANEEAKP-SISVPPKKVKTE 434
Query: 181 IDVKP-VKEEPVSTSKKNAPKKGSSSVPIESGS--AVAGPVTEDEIRAVLTQDKPVTTQD 351
+ K K+ S+SK NAP +G+ SGS A +GPVTE+EI+AVL Q P+TTQ+
Sbjct: 435 NEPKSSAKDVNGSSSKSNAPPRGTPPPSSNSGSSNAASGPVTEEEIKAVLLQRTPLTTQE 494
Query: 352 LVAKFKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVLRE 477
LVAKF++RLRCKEDK+AFA IL+RISKIQK TNG S+V+LRE
Sbjct: 495 LVAKFRARLRCKEDKEAFANILKRISKIQK-TNGSSYVILRE 535
>ref|XP_003534809.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Glycine max]
Length = 541
Score = 140 bits (354), Expect = 3e-31
Identities = 83/164 (50%), Positives = 105/164 (64%), Gaps = 5/164 (3%)
Frame = +1
Query: 1 KQKDAPKEEPVDNSPLKPISSAPXXXXXXXXXXXXXXXXMSTDDAKATSTTVPSKKAKTE 180
KQKDA KEEP+DNSP KP ++ P ++ K ++T P KK K E
Sbjct: 380 KQKDALKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKL--NEETKPSNTATP-KKVKAE 436
Query: 181 IDVK-PVKEEPVSTSKKNAPKKGSSSVPIESGSAV----AGPVTEDEIRAVLTQDKPVTT 345
+ K K+ S SK +AP KG+ + + GS+ +GPV+E+EIRAVL Q PVTT
Sbjct: 437 NEPKLSAKDVNGSASKSSAPPKGTPPLSSKGGSSTTTTASGPVSEEEIRAVLRQKTPVTT 496
Query: 346 QDLVAKFKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVLRE 477
QDLVAKFK+RLRC EDK AFA IL+RISKIQKTT G S+V+LR+
Sbjct: 497 QDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRD 540
>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis]
gi|223541454|gb|EEF43004.1| tfiif-alpha, putative
[Ricinus communis]
Length = 533
Score = 140 bits (354), Expect = 3e-31
Identities = 84/158 (53%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Frame = +1
Query: 7 KDAPKEEPVDNSPLKPISSAPXXXXXXXXXXXXXXXXMSTDDAKATSTTVPSKKAKTEID 186
K PKEEP DNSP KP++SA +++D+AK T+ P KK KTE +
Sbjct: 380 KQTPKEEPADNSPAKPMTSASSKGTPSTSKSAKGKRKLNSDEAKQTNVA-PQKKVKTENE 438
Query: 187 VKP-VKEEPVSTSKKNAPKKGSSSVPIESGSAVAGPVTEDEIRAVLTQDKPVTTQDLVAK 363
+KP VKEE TSK +A K + P + + PVTE+EIRAVL Q+ PVTTQDLVA+
Sbjct: 439 LKPTVKEESAPTSKSSATPKAA---PPSAKTGSTSPVTEEEIRAVLLQNGPVTTQDLVAR 495
Query: 364 FKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVLRE 477
FKSRL+ EDK AFA ILRRISKIQK T+G S+VVLR+
Sbjct: 496 FKSRLKSSEDKKAFADILRRISKIQK-TSGSSYVVLRD 532
>ref|NP_001154225.2| transcription initiation factor IIF subunit alpha [Arabidopsis
thaliana] gi|332657756|gb|AEE83156.1| transcription
initiation factor IIF subunit alpha [Arabidopsis
thaliana]
Length = 506
Score = 140 bits (353), Expect = 4e-31
Identities = 86/165 (52%), Positives = 102/165 (61%), Gaps = 6/165 (3%)
Frame = +1
Query: 1 KQKDAPKEEPVDNSPLKPISSAPXXXXXXXXXXXXXXXXMSTDDAKATSTTVPSKKAKTE 180
KQK+A KEEPVDN+P KP S P D K +S+ KK KTE
Sbjct: 237 KQKEAAKEEPVDNAPAKPAPSGPPRGTPPAKPSKGKRKLNDGDSKKPSSSV--QKKVKTE 294
Query: 181 IDVKP-VKEEPVST-SKKNAPKKG----SSSVPIESGSAVAGPVTEDEIRAVLTQDKPVT 342
D K +KEE +T SK N P K +S P S SA GPVTEDEIRAVL + K VT
Sbjct: 295 NDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVT 354
Query: 343 TQDLVAKFKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVLRE 477
TQDLV++FK+RL+ KEDK+AFA ILR+ISKIQK ++FVVLRE
Sbjct: 355 TQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE 399
Score = 65.5 bits (158), Expect = 2e-08
Identities = 32/60 (53%), Positives = 44/60 (73%)
Frame = +1
Query: 292 VTEDEIRAVLTQDKPVTTQDLVAKFKSRLRCKEDKDAFALILRRISKIQKTTNGKSFVVL 471
VTEDEIR VL + K +TT +LV +FK RL EDKD+F+ IL++I+K+QK + FVV+
Sbjct: 429 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 488