BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00010198
         (867 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       395   e-108
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-...   393   e-107
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   392   e-107
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   392   e-107
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...   392   e-107

>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  395 bits (1016), Expect = e-108
 Identities = 181/282 (64%), Positives = 232/282 (82%)
 Frame = +3

Query: 21   EEPRRSKRAKVVKDFGGDFITYNVEDEPLTFRQAMDSSESRHWKGAVKSEIDSIVSNGTW 200
            + P+RSKR +V K FG DFI Y V+D P T  +A  SS++  WK AV +E+DSI+SNGTW
Sbjct: 726  DAPKRSKRQRVEKSFGDDFIVYLVDDTPTTIAEAFASSDADDWKEAVHNEMDSILSNGTW 785

Query: 201  ELVDLPPGCSTIGCRWIFKKKLNPDGSIDKYKARLVAKGFKQQEGIDYFDTYSPVARMTT 380
            E+ D P GC  +GC+W+FKKKL PDG+I+KYKARLVAKG+ Q+EG D+FDTYSPVARMTT
Sbjct: 786  EITDRPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARMTT 845

Query: 381  IRMLVALASVHGLIIHQMDVKTAFLHGELEEEIYMDQPEGFVASGNERKVCKLIKSIYGL 560
            IR+L++LA+ +GL++HQMDVKTAFL+GEL+EEIYM+QP+GFV  G E KVCKL+KS+YGL
Sbjct: 846  IRVLLSLAASYGLLVHQMDVKTAFLNGELDEEIYMEQPDGFVVKGQESKVCKLLKSLYGL 905

Query: 561  KQAPRDWHKKFDETVLPFSYVINESDKCVYTKVKGSECVILCIYVDDILLFGTNIEIINE 740
            KQAP+ WH+KFD T+    + INE+D+CVY +  G E VILC+YVDDIL+FGTNI++INE
Sbjct: 906  KQAPKQWHEKFDTTLTSAGFAINEADRCVYYRCGGGEGVILCLYVDDILIFGTNIDVINE 965

Query: 741  TKAFLKRHFEMKDMGEASVILGLKLTQSAEGITLSQSHYIEK 866
             K+FL + F+MKD+GEA VIL +KL ++  GITLSQSHY+EK
Sbjct: 966  VKSFLSKSFDMKDLGEADVILNIKLIKADGGITLSQSHYVEK 1007


>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 713

 Score =  393 bits (1010), Expect = e-107
 Identities = 178/282 (63%), Positives = 231/282 (81%)
 Frame = +3

Query: 21   EEPRRSKRAKVVKDFGGDFITYNVEDEPLTFRQAMDSSESRHWKGAVKSEIDSIVSNGTW 200
            E PRRSKR +  K FG DF  Y V+D P +  +A  S ++ +WK AV+SE+DSI++NGTW
Sbjct: 157  EAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTW 216

Query: 201  ELVDLPPGCSTIGCRWIFKKKLNPDGSIDKYKARLVAKGFKQQEGIDYFDTYSPVARMTT 380
            E+ + P GC  +GC+W+FKKKL PDG+I+KYKARLVAKG+ Q+EG D+FDTYSPVAR+TT
Sbjct: 217  EVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTT 276

Query: 381  IRMLVALASVHGLIIHQMDVKTAFLHGELEEEIYMDQPEGFVASGNERKVCKLIKSIYGL 560
            IR+L++LA+ HGL++HQMDVKTAFL+GEL+EEIYMDQP+GFV  G E KVCKL+KS+YGL
Sbjct: 277  IRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGL 336

Query: 561  KQAPRDWHKKFDETVLPFSYVINESDKCVYTKVKGSECVILCIYVDDILLFGTNIEIINE 740
            KQAP+ WH+KFD+T+    +V+NE+DKCVY +  G E VILC+YVDDIL+FGTN+E+INE
Sbjct: 337  KQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINE 396

Query: 741  TKAFLKRHFEMKDMGEASVILGLKLTQSAEGITLSQSHYIEK 866
             K+FL ++F+MKD+G A VIL +KL +   GITL QSHY+EK
Sbjct: 397  VKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK 438


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  392 bits (1008), Expect = e-107
 Identities = 177/282 (62%), Positives = 230/282 (81%)
 Frame = +3

Query: 21   EEPRRSKRAKVVKDFGGDFITYNVEDEPLTFRQAMDSSESRHWKGAVKSEIDSIVSNGTW 200
            E PRRSKR +  K FG DF  Y V+D P +  +A  S ++ +WK AV+SE+DSI++NGTW
Sbjct: 764  EAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTW 823

Query: 201  ELVDLPPGCSTIGCRWIFKKKLNPDGSIDKYKARLVAKGFKQQEGIDYFDTYSPVARMTT 380
            E+ + P GC  +GC+W+FKKKL PDG+I+KYKARLVAKG+ Q+EG D+FDTYSPVAR+TT
Sbjct: 824  EVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTT 883

Query: 381  IRMLVALASVHGLIIHQMDVKTAFLHGELEEEIYMDQPEGFVASGNERKVCKLIKSIYGL 560
            IR+L++LA+ HGL++HQMDVKTAFL+GEL+EEIYMDQP+GFV  G E KVCKL+KS+YGL
Sbjct: 884  IRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGL 943

Query: 561  KQAPRDWHKKFDETVLPFSYVINESDKCVYTKVKGSECVILCIYVDDILLFGTNIEIINE 740
            KQAP+ WH+KFD+T+    + +NE+DKCVY +  G E VILC+YVDDIL+FGTN+E+INE
Sbjct: 944  KQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRYGGGEGVILCLYVDDILIFGTNLEVINE 1003

Query: 741  TKAFLKRHFEMKDMGEASVILGLKLTQSAEGITLSQSHYIEK 866
             K+FL ++F+MKD+G A VIL +KL +   GITL QSHY+EK
Sbjct: 1004 VKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK 1045


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  392 bits (1007), Expect = e-107
 Identities = 178/282 (63%), Positives = 230/282 (81%)
 Frame = +3

Query: 21   EEPRRSKRAKVVKDFGGDFITYNVEDEPLTFRQAMDSSESRHWKGAVKSEIDSIVSNGTW 200
            E PRRSKR +  K FG DF  Y V+D P +  +A  S ++ +WK AV+SE+DSI++NGTW
Sbjct: 764  EAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTW 823

Query: 201  ELVDLPPGCSTIGCRWIFKKKLNPDGSIDKYKARLVAKGFKQQEGIDYFDTYSPVARMTT 380
            E+ + P GC  +GC+W+FKKKL PDG+I+KYKARLVAKG+ Q+EG D+FDTYSPVAR+TT
Sbjct: 824  EVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTT 883

Query: 381  IRMLVALASVHGLIIHQMDVKTAFLHGELEEEIYMDQPEGFVASGNERKVCKLIKSIYGL 560
            IR+L++LA+ HGL++HQMDVKTAFL+GEL+EEIYMDQP+GFV  G E KVCKL+KS+YGL
Sbjct: 884  IRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKVCKLLKSLYGL 943

Query: 561  KQAPRDWHKKFDETVLPFSYVINESDKCVYTKVKGSECVILCIYVDDILLFGTNIEIINE 740
            KQAP+ WH+KFD+T+    + +NE+DKCVY +  G E VILC+YVDDIL+FGTNIE+INE
Sbjct: 944  KQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVINE 1003

Query: 741  TKAFLKRHFEMKDMGEASVILGLKLTQSAEGITLSQSHYIEK 866
             K+FL ++F+MKD+G A VIL +KL +   GITL QSHY+EK
Sbjct: 1004 VKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK 1045


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  392 bits (1007), Expect = e-107
 Identities = 178/282 (63%), Positives = 230/282 (81%)
 Frame = +3

Query: 21   EEPRRSKRAKVVKDFGGDFITYNVEDEPLTFRQAMDSSESRHWKGAVKSEIDSIVSNGTW 200
            E PRRSKR +  K FG DF  Y V+D P +  +A  S ++ +WK AV SE+DSI++NGTW
Sbjct: 764  EAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSEMDSIIANGTW 823

Query: 201  ELVDLPPGCSTIGCRWIFKKKLNPDGSIDKYKARLVAKGFKQQEGIDYFDTYSPVARMTT 380
            E+ + P GC  +GC+W+FKKKL PDG+I+KYKARLVAKG+ Q+EG D+FDTYSPVAR+TT
Sbjct: 824  EVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTT 883

Query: 381  IRMLVALASVHGLIIHQMDVKTAFLHGELEEEIYMDQPEGFVASGNERKVCKLIKSIYGL 560
            IR+L++LA+ HGL++HQMDVKTAFL+GEL+EEIYMDQP+GFV  G E KVCKL+KS+YGL
Sbjct: 884  IRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGL 943

Query: 561  KQAPRDWHKKFDETVLPFSYVINESDKCVYTKVKGSECVILCIYVDDILLFGTNIEIINE 740
            KQAP+ WH+KFD+T+   S+ +NE+DKCVY +  G E VILC+YVDDIL+FGTN+E+INE
Sbjct: 944  KQAPKQWHEKFDKTLTSASFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINE 1003

Query: 741  TKAFLKRHFEMKDMGEASVILGLKLTQSAEGITLSQSHYIEK 866
             K+FL ++F+MKD+G A VIL +KL +   GITL QSHY+EK
Sbjct: 1004 VKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEK 1045