BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009776
         (942 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]     352   7e-95
ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotei...   350   3e-94
ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotei...   348   8e-94
ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotei...   345   7e-93
gb|ACJ84781.1| unknown [Medicago truncatula]                          345   9e-93

>emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
          Length = 253

 Score =  352 bits (903), Expect = 7e-95
 Identities = 172/238 (72%), Positives = 195/238 (81%), Gaps = 2/238 (0%)
 Frame = -2

Query: 890 GNEVPVNNTIYINNINEKIKLDELKKSLNAIFSQFGNILEILAFKTLKHKGQAWVVFEDA 711
           G E P N TIYINN+NEKIKL+ELKKS++A+FSQFG ILE+LAFKTLKHKGQAWVVFE+ 
Sbjct: 16  GGETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 75

Query: 710 SAASRAIQKMQNFPFHDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXXXXEQHD 531
           S+AS A+++MQ FPF+DKPMRIQYA+TKSD++AK DGTFVP               +Q D
Sbjct: 76  SSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQD 135

Query: 530 ATHAAMGLNPGYNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPHQTTPMML 357
           +  A MGLNP Y GAYGA P  SQIPYM  AK+AVPEAPAPPNSILF+QNLPHQ+TPMML
Sbjct: 136 SNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMML 195

Query: 356 QMLFCQYPGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIVPENPMSITYAKK 183
           QMLFCQYPGFKEVRM+EAKPGIAF+EY +E QST AM  LQGFKI  ENPM ITYAKK
Sbjct: 196 QMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253


>ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
           sativus]
          Length = 242

 Score =  350 bits (898), Expect = 3e-94
 Identities = 176/243 (72%), Positives = 198/243 (81%), Gaps = 1/243 (0%)
 Frame = -2

Query: 908 MAEMSV-GNEVPVNNTIYINNINEKIKLDELKKSLNAIFSQFGNILEILAFKTLKHKGQA 732
           MAE++  GNEVP N TIYINN+NEKIKL+ELKKSLNA+FSQFG ILE+LAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 731 WVVFEDASAASRAIQKMQNFPFHDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXX 552
           WVVFE+ S+A+ A+++MQ FPF+DKPMRIQYA+TKSDIIAK DG+FVP            
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 551 XXXEQHDATHAAMGLNPGYNGAYGATPQLSQIPYMAKSAVPEAPAPPNSILFIQNLPHQT 372
              EQHDA  A MGLNP + GAYGAT   SQ+PY     VPEAPAPPNSILF+QNLPH+T
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVMVPEAPAPPNSILFVQNLPHET 179

Query: 371 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIVPENPMSITY 192
           TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY +E QST AM  LQGFK+ P+N M ITY
Sbjct: 180 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITY 239

Query: 191 AKK 183
           AKK
Sbjct: 240 AKK 242


>ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
          Length = 245

 Score =  348 bits (894), Expect = 8e-94
 Identities = 175/245 (71%), Positives = 199/245 (81%), Gaps = 3/245 (1%)
 Frame = -2

Query: 908 MAEMSVGNEVPVNNTIYINNINEKIKLDELKKSLNAIFSQFGNILEILAFKTLKHKGQAW 729
           MAE++ G E+  N TIYINN+NEKIKL+ELKKSL A+FSQFG I+E+LAFKTLKHKGQAW
Sbjct: 1   MAELNTGGEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAW 60

Query: 728 VVFEDASAASRAIQKMQNFPFHDKPMRIQYARTKSDIIAKKDGTFVP-XXXXXXXXXXXX 552
           VVFE+ S+A+ A+++MQ FPF+DKPMRIQYA+TKSD+IAK DGTFVP             
Sbjct: 61  VVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGR 120

Query: 551 XXXEQHDATHAAMGLNPGYNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPH 378
              EQHDA  A +G+NP Y GAYGA P LSQIPY+  AKSAVPEAPAPPN+ILFIQNLPH
Sbjct: 121 KRREQHDANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPH 180

Query: 377 QTTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIVPENPMSI 198
           + TPMMLQM FCQYPGFKEVRMVEAKPGIAFVEY +E QST AM GLQG KI  +NPM I
Sbjct: 181 EATPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLI 240

Query: 197 TYAKK 183
           TYAKK
Sbjct: 241 TYAKK 245


>ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Glycine max]
          Length = 241

 Score =  345 bits (886), Expect = 7e-93
 Identities = 173/242 (71%), Positives = 197/242 (81%)
 Frame = -2

Query: 908 MAEMSVGNEVPVNNTIYINNINEKIKLDELKKSLNAIFSQFGNILEILAFKTLKHKGQAW 729
           M+E++   E+P NNTIYINN+NEKIK+DELKKSLNA+F+QFG ILE+LAFKTLKHKGQAW
Sbjct: 1   MSEVNATPEIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAW 60

Query: 728 VVFEDASAASRAIQKMQNFPFHDKPMRIQYARTKSDIIAKKDGTFVPXXXXXXXXXXXXX 549
           VVFEDAS+AS A+++MQ FPF+DKPMRIQYA+TKSDIIAK DGTFVP             
Sbjct: 61  VVFEDASSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKK 120

Query: 548 XXEQHDATHAAMGLNPGYNGAYGATPQLSQIPYMAKSAVPEAPAPPNSILFIQNLPHQTT 369
             +QHD+  A MGLNP Y GAYGA P ++  P  AKS VPEAPAPPN+ILFIQNLP+ +T
Sbjct: 121 RKDQHDSNLAGMGLNPAYAGAYGAAPAIA-YPGGAKSMVPEAPAPPNNILFIQNLPNDST 179

Query: 368 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIVPENPMSITYA 189
           PMMLQMLF QYPGFKEVRMVE KPGIAFVEY +E QST AM  LQGFKI P+NPM ITYA
Sbjct: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYA 239

Query: 188 KK 183
           KK
Sbjct: 240 KK 241


>gb|ACJ84781.1| unknown [Medicago truncatula]
          Length = 245

 Score =  345 bits (885), Expect = 9e-93
 Identities = 175/245 (71%), Positives = 199/245 (81%), Gaps = 3/245 (1%)
 Frame = -2

Query: 908 MAEMSVGNEVPVNNTIYINNINEKIKLDELKKSLNAIFSQFGNILEILAFKTLKHKGQAW 729
           MAE++   E P N TIYINN+NEKIK+DELKKSL+A+FSQFG ILE+LAFKTLKHKGQAW
Sbjct: 1   MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 728 VVFEDASAASRAIQKMQNFPFHDKPMRIQYARTKSDIIAKKDGTFVP-XXXXXXXXXXXX 552
           V+FED ++AS A+++MQ FPF+DKPMRIQYARTKSD+IAK +GTFVP             
Sbjct: 61  VIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGK 120

Query: 551 XXXEQHDATHAAMGLNPGYNGAYGATPQLSQIPYM--AKSAVPEAPAPPNSILFIQNLPH 378
              +Q+DA  A  GLNP Y GAYGATP LSQIPY   AKS +PEAPAPPN+ILFIQNLP+
Sbjct: 121 KRKDQNDANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPN 180

Query: 377 QTTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYENEAQSTQAMMGLQGFKIVPENPMSI 198
           +TTPMMLQMLF QYPGFKEVRMVEAKPGIAFVEY +E QST AM  LQGFKI P+NPM I
Sbjct: 181 ETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLI 240

Query: 197 TYAKK 183
           TYAKK
Sbjct: 241 TYAKK 245