BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009656
         (1511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              441   e-121
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   429   e-118
ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polyp...   377   e-102
emb|CBI26210.3| unnamed protein product [Vitis vinifera]              377   e-102
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...   354   3e-95

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  441 bits (1135), Expect = e-121
 Identities = 244/434 (56%), Positives = 304/434 (70%), Gaps = 4/434 (0%)
 Frame = -3

Query: 1290 SQHGIKLAVNLISSYFGDIVAKVCECLLGKGTLPLVQIIQFTGLSKQNAVNSLLVLIQHN 1111
            +Q+G++LAV+LISS+FG++VAKVC+CLL KGTL L  +I+FT L  Q   + +LVLIQHN
Sbjct: 3    TQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQHN 62

Query: 1110 CVQAFATQTEGKFGGAPRISTQYMALFDNIIHHMRFPKFIAIVNEDLGKECEGIFVWLLQ 931
            CVQAFA Q E  FG APR+ TQYMALF NI+H MRF KF+AIV+E+L KECE I   LLQ
Sbjct: 63   CVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQ 122

Query: 930  DGRLSVNDIVERRK--EPSRNSTASDAFHECFRNLVNAQYVERCPAHEPFLAPXXXXXXX 757
             GRL++  I++R K  +        DA  E F  LV A +VERCPA EPFLAP       
Sbjct: 123  HGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETP 182

Query: 756  XXXXXXXXXXKVED--TIEVRALAEASPMDSVRFLLETDSWTDDPEQKSNDDSSSLAAAG 583
                       VE+  TIE RA+A A+PMD+ RF +  ++ TD        D S    AG
Sbjct: 183  ARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTD-------VDDSPNVTAG 235

Query: 582  EKRKLDALESNTKSWATNQKKEVLWRVNFEEFVRRLRHKSCIENVRARLDAGAATVLGAV 403
            EKRK DALE + ++ A+ + K+VLWR NFEEFVR LRHK+CI NV+ RLD GAA VL A+
Sbjct: 236  EKRKQDALELDKETGASCE-KDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAM 294

Query: 402  LEATRRTETKVKVENSVPLSIDDIMQEVIKSEEGRTMNSDRVRASLAQLGCDMPSITGID 223
            LEATR  E KVK ENSVPLS+D I + V+KSE GR+M  +RVR SL QLGC  P + G  
Sbjct: 295  LEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGC-APCVRGAA 353

Query: 222  ETYSIDLKRILELAQIQEVESIVLKRYGREACRIFKLLLQADRVVETEMISKDTFVDKKD 43
            E+YS+DLK I+ELAQ  EVESI LKRYGR+A RIF+LL ++ R++ET+ IS  TFV+KKD
Sbjct: 354  ESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKD 413

Query: 42   AATILHQMWKDDYL 1
             A IL+Q+WKD+YL
Sbjct: 414  TAKILYQLWKDEYL 427


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  429 bits (1104), Expect = e-118
 Identities = 240/432 (55%), Positives = 300/432 (69%), Gaps = 2/432 (0%)
 Frame = -3

Query: 1290 SQHGIKLAVNLISSYFGDIVAKVCECLLGKGTLPLVQIIQFTGLSKQNAVNSLLVLIQHN 1111
            +Q+G++LAV+LISS+FG++VAKVC+CLL KGTL L  +I+FT L  Q   + +LVLIQHN
Sbjct: 3    TQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQHN 62

Query: 1110 CVQAFATQTEGKFGGAPRISTQYMALFDNIIHHMRFPKFIAIVNEDLGKECEGIFVWLLQ 931
            CVQAFA Q E     APR+ TQYMALF NI+H MRF KF+AIV+E+L KECE I   LLQ
Sbjct: 63   CVQAFAIQQE-----APRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQ 117

Query: 930  DGRLSVNDIVERRKEPSRNSTASDAFHECFRNLVNAQYVERCPAHEPFLAPXXXXXXXXX 751
             GRL++  I++R K   R     DA  E F  LV A +VERCPA EPFLAP         
Sbjct: 118  HGRLTLEQILDRAKSNQREPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPAR 177

Query: 750  XXXXXXXXKVED--TIEVRALAEASPMDSVRFLLETDSWTDDPEQKSNDDSSSLAAAGEK 577
                     VE+  TIE RA+A A+PMD+ RF +  ++ TD       DDS +       
Sbjct: 178  KRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV------DDSPN------- 224

Query: 576  RKLDALESNTKSWATNQKKEVLWRVNFEEFVRRLRHKSCIENVRARLDAGAATVLGAVLE 397
            RK DALE + ++ A+ +K +VLWR NFEEFVR LRHK+CI NV+ RLD GAA VL A+LE
Sbjct: 225  RKQDALELDKETGASCEK-DVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 283

Query: 396  ATRRTETKVKVENSVPLSIDDIMQEVIKSEEGRTMNSDRVRASLAQLGCDMPSITGIDET 217
            ATR  E KVK ENSVPLS+D I + V+KSE GR+M  +RVR SL QLGC  P + G  E+
Sbjct: 284  ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGC-APCVRGAAES 342

Query: 216  YSIDLKRILELAQIQEVESIVLKRYGREACRIFKLLLQADRVVETEMISKDTFVDKKDAA 37
            YS+DLK I+ELAQ  EVESI LKRYGR+A RIF+LL ++ R++ET+ IS  TFV+KKD A
Sbjct: 343  YSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTA 402

Query: 36   TILHQMWKDDYL 1
             IL+Q+WKD+YL
Sbjct: 403  KILYQLWKDEYL 414


>ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative [Ricinus
            communis] gi|223549895|gb|EEF51382.1| DNA-directed RNA
            polymerase III 62 kDa polypeptide, putative [Ricinus
            communis]
          Length = 485

 Score =  377 bits (968), Expect = e-102
 Identities = 205/432 (47%), Positives = 282/432 (65%), Gaps = 2/432 (0%)
 Frame = -3

Query: 1290 SQHGIKLAVNLISSYFGDIVAKVCECLLGKGTLPLVQIIQFTGLSKQNAVNSLLVLIQHN 1111
            +QHGIK A ++I+++FG++VAKVC+CLL KG L + ++++FT L++    NSLLVLIQHN
Sbjct: 4    TQHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHN 63

Query: 1110 CVQAFATQTEGKFGGAPRISTQYMALFDNIIHHMRFPKFIAIVNEDLGKECEGIFVWLLQ 931
            CVQA+ +      G   +++T Y+ALFDNI+H +RF KF+AI+++D  K C  I   LL+
Sbjct: 64   CVQAYRS------GDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLE 117

Query: 930  DGRLSVNDIVERRKEPSRNSTASDAFHECFRNLVNAQYVERCPAHEPFLAPXXXXXXXXX 751
             GRL+V  IV+R    SRNS   D+  E    LVN +Y+E CPA EP LAP         
Sbjct: 118  HGRLTVKQIVDRAN--SRNSIGLDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDRAK 175

Query: 750  XXXXXXXXKV--EDTIEVRALAEASPMDSVRFLLETDSWTDDPEQKSNDDSSSLAAAGEK 577
                     V   +T+E R LA A PMD+ RF ++ D+   D + +++ + SS    G+K
Sbjct: 176  KRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKD-DAENDQNKSSDKHVGDK 234

Query: 576  RKLDALESNTKSWATNQKKEVLWRVNFEEFVRRLRHKSCIENVRARLDAGAATVLGAVLE 397
               D +              VLWR NFEEF+RRLRHK+CIENVR RLD GAA VL A+L+
Sbjct: 235  VAEDQV--------------VLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLD 280

Query: 396  ATRRTETKVKVENSVPLSIDDIMQEVIKSEEGRTMNSDRVRASLAQLGCDMPSITGIDET 217
            A+R  E KVK  +SVPLS++ I +EVIK+E GR M  D + ++L QLG   P +  +++ 
Sbjct: 281  ASRTEEKKVKTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPPPFVKAVEDL 340

Query: 216  YSIDLKRILELAQIQEVESIVLKRYGREACRIFKLLLQADRVVETEMISKDTFVDKKDAA 37
            Y+ID K I+E AQ  EVESIVLKRYGR+A RIF+LL +A R++ET+ IS   FV+KK+  
Sbjct: 341  YTIDFKHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKETT 400

Query: 36   TILHQMWKDDYL 1
             IL++MW+DDYL
Sbjct: 401  KILYKMWQDDYL 412


>emb|CBI26210.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  377 bits (967), Expect = e-102
 Identities = 219/433 (50%), Positives = 285/433 (65%), Gaps = 4/433 (0%)
 Frame = -3

Query: 1287 QHGIKLAVNLISSYFGDIVAKVCECLLGKGTLPLVQIIQFTGLSKQNAVNSLLVLIQHNC 1108
            ++GIKLAV+LIS+ FGD  AKVC+CLL KGTL L  I++   LS Q     L VLIQHNC
Sbjct: 4    EYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQHNC 63

Query: 1107 VQAFATQTEGKFGGAPRISTQYMALFDNIIHHMRFPKFIAIVNEDLGKECEGIFVWLLQD 928
            VQAFA + EG  G  P + TQYM LFDNI+H MRFPK +AIV+++L KECE +F   L+ 
Sbjct: 64   VQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAFLKH 123

Query: 927  GRLSVNDIVER--RKEPSRNSTASDAFHECFRNLVNAQYVERCPAHEPFLAPXXXXXXXX 754
            G L++  I++R    +   N T  DA    F  LVNA YVERCPA +PFL P        
Sbjct: 124  GWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEKTPA 183

Query: 753  XXXXXXXXXKVEDTI--EVRALAEASPMDSVRFLLETDSWTDDPEQKSNDDSSSLAAAGE 580
                      VE+    E   +A+A+P  +  F + TD+  D    KS  +   +   G+
Sbjct: 184  RKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGV-VIGK 242

Query: 579  KRKLDALESNTKSWATNQKKEVLWRVNFEEFVRRLRHKSCIENVRARLDAGAATVLGAVL 400
            KRK DAL+ +T+S A ++ K+V WR N++E V  LRHK+CIENVRARLD+GAA VL A+L
Sbjct: 243  KRKQDALKLDTESGAASE-KDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAML 301

Query: 399  EATRRTETKVKVENSVPLSIDDIMQEVIKSEEGRTMNSDRVRASLAQLGCDMPSITGIDE 220
            EAT+  E  VK E SV LSI  I + V++SE G +M  +R+RASL QLGC  P+  G D 
Sbjct: 302  EATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCH-PNGVGADR 360

Query: 219  TYSIDLKRILELAQIQEVESIVLKRYGREACRIFKLLLQADRVVETEMISKDTFVDKKDA 40
            TY+IDLK+I+ELAQ  EVES+VLKRYGREA RIF+LL ++   +ET  IS  TF++KK+A
Sbjct: 361  TYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEA 420

Query: 39   ATILHQMWKDDYL 1
            A IL+++WKD+ L
Sbjct: 421  AKILYKLWKDECL 433


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
            predicted protein [Populus trichocarpa]
          Length = 519

 Score =  354 bits (909), Expect = 3e-95
 Identities = 202/433 (46%), Positives = 273/433 (63%), Gaps = 3/433 (0%)
 Frame = -3

Query: 1290 SQHGIKLAVNLISSYFGDIVAKVCECLLGKGTLPLVQIIQFTGLSKQNAVNSLLVLIQHN 1111
            SQ+GIK AV++I+++FG +VAKVC+CLL KG LPL +I+++T LS+    N LLVLIQHN
Sbjct: 2    SQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQHN 61

Query: 1110 CVQAFATQTEGKFGGAPRISTQYMALFDNIIHHMRFPKFIAIVNEDLGKECEGIFVWLLQ 931
            C+Q F  + EG FG   ++S+ YM LFDN++H +RF KF+AIV+++  K C  +   LLQ
Sbjct: 62   CLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLLQ 121

Query: 930  DGRLSVNDIVERRKEPSRNSTASDAFHECFRNLVNAQYVERCPAHEPFLA---PXXXXXX 760
             GRLS   I +  ++ S +S   +A  E    LV A+YVERCP  EPFLA          
Sbjct: 122  HGRLSSEQIFDGFRDRS-SSGGMEALQENMHKLVMARYVERCPISEPFLALPSEEEAAPV 180

Query: 759  XXXXXXXXXXXKVEDTIEVRALAEASPMDSVRFLLETDSWTDDPEQKSNDDSSSLAAAGE 580
                          +T+E R L  A P + +RF  E +        K  ++SSS    G+
Sbjct: 181  RRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSS--NIGD 238

Query: 579  KRKLDALESNTKSWATNQKKEVLWRVNFEEFVRRLRHKSCIENVRARLDAGAATVLGAVL 400
            KRKLDALES+      + K+  LWRVNFEEF+RRLRHK CIE VR RLD  AATV  A+L
Sbjct: 239  KRKLDALESDIDGGVAD-KQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFTAML 297

Query: 399  EATRRTETKVKVENSVPLSIDDIMQEVIKSEEGRTMNSDRVRASLAQLGCDMPSITGIDE 220
            +A+R  E K+K  +SVPLS + I  EVIKSE+GR M  D V + L  L    P +  +D 
Sbjct: 298  DASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPPFVRVVDN 357

Query: 219  TYSIDLKRILELAQIQEVESIVLKRYGREACRIFKLLLQADRVVETEMISKDTFVDKKDA 40
            +YSID K  +E+AQ    ESIV K+YG++A R+F+LL +A R++ET+ IS   F++KK+ 
Sbjct: 358  SYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKISDSIFLEKKET 415

Query: 39   ATILHQMWKDDYL 1
            A IL +MW+ DYL
Sbjct: 416  ANILSKMWQGDYL 428