BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009615
         (1811 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]     231   6e-58
ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   231   6e-58
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...   226   1e-56
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...   225   3e-56
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...   218   5e-54

>emb|CAD13175.1| viroid RNA-binding protein [Solanum lycopersicum]
          Length = 313

 Score =  231 bits (588), Expect = 6e-58
 Identities = 145/298 (48%), Positives = 169/298 (56%), Gaps = 10/298 (3%)
 Frame = +3

Query: 606  NELQGSSWSEVAVPHSPPRPKKPKTSLVNSIPRKVERIPPEPLXXXXXXXXXXXXXXXXR 785
            +ELQGSSW+ +    +P R KKPK + V +I +K ER+                      
Sbjct: 22   DELQGSSWNHIP---TPERVKKPKPTPVPNISKKQERM------------------QNHS 60

Query: 786  LAQSPRIPQPMHNPQPMQKPNLSSGSNPTTSNPRSAQSPVPTPSPVKAQPAKSAKQAGAV 965
             A +P +P P  NP                  P   QSP+ TPSPV+   A +AK   A 
Sbjct: 61   SASTPSLPVPPPNP------------------PARQQSPLSTPSPVR---APAAKPQSAA 99

Query: 966  KGASSTKLPKPRAKDSNKREMSMEEKQRLGVGLQNLPQEKMPQLVQIIRKRNEQLAQEGD 1145
            K  +  K PKPRAKD NKREM+MEEK +LGVGLQ+LPQEKMPQLVQIIRKRNE LAQ+GD
Sbjct: 100  KVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGD 159

Query: 1146 EIELDIEALDTETLWELDRFVTNWKKLVSKTKRQALMENY------SAVQMVTTDTDEA- 1304
            EIELDIEALDTETLWELDRFVTNWKK+VSKTKRQALM N       +A    TT   EA 
Sbjct: 160  EIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEAD 219

Query: 1305 --PVSNRNDGSAXXXXXXXXXXXXXXXXXMPENSFPPVEIEKDD-GGHGQDNGIKNGT 1469
                S +ND                     P   FPPVEIEKD+ GG  Q+NG   G+
Sbjct: 220  GPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGS 277


>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
            gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
            protein Virp1a [Solanum lycopersicum]
            gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
            protein Virp1b [Solanum lycopersicum]
            gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
            protein Virp1c [Solanum lycopersicum]
            gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
            protein Virp1d [Solanum lycopersicum]
            gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
            gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  231 bits (588), Expect = 6e-58
 Identities = 145/298 (48%), Positives = 169/298 (56%), Gaps = 10/298 (3%)
 Frame = +3

Query: 606  NELQGSSWSEVAVPHSPPRPKKPKTSLVNSIPRKVERIPPEPLXXXXXXXXXXXXXXXXR 785
            +ELQGSSW+ +    +P R KKPK + V +I +K ER+                      
Sbjct: 311  DELQGSSWNHIP---TPERVKKPKPTPVPNISKKQERM------------------QNHS 349

Query: 786  LAQSPRIPQPMHNPQPMQKPNLSSGSNPTTSNPRSAQSPVPTPSPVKAQPAKSAKQAGAV 965
             A +P +P P  NP                  P   QSP+ TPSPV+   A +AK   A 
Sbjct: 350  SASTPSLPVPPPNP------------------PARQQSPLSTPSPVR---APAAKPQSAA 388

Query: 966  KGASSTKLPKPRAKDSNKREMSMEEKQRLGVGLQNLPQEKMPQLVQIIRKRNEQLAQEGD 1145
            K  +  K PKPRAKD NKREM+MEEK +LGVGLQ+LPQEKMPQLVQIIRKRNE LAQ+GD
Sbjct: 389  KVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGD 448

Query: 1146 EIELDIEALDTETLWELDRFVTNWKKLVSKTKRQALMENY------SAVQMVTTDTDEA- 1304
            EIELDIEALDTETLWELDRFVTNWKK+VSKTKRQALM N       +A    TT   EA 
Sbjct: 449  EIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEAD 508

Query: 1305 --PVSNRNDGSAXXXXXXXXXXXXXXXXXMPENSFPPVEIEKDD-GGHGQDNGIKNGT 1469
                S +ND                     P   FPPVEIEKD+ GG  Q+NG   G+
Sbjct: 509  GPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENGGGGGS 566



 Score =  137 bits (345), Expect = 9e-30
 Identities = 79/149 (53%), Positives = 92/149 (61%), Gaps = 9/149 (6%)
 Frame = +1

Query: 55  DRIESRQLQLQLPPRSSHESTQFPPRSSHGKMKKLSGQKRMLPLGPPQ----INSQSEQQ 222
           DRIES QL    P              S GK KK SG KR  P G  +    + +  E +
Sbjct: 127 DRIESGQLSTTNP-------------RSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENR 173

Query: 223 NVVVPNGGIDGI-----EEMLKSCRQILMKLMKHKHSWVFNKPVDAIALGLHDYHLIVKK 387
           N   P GG+DG+     E M+K CRQIL KLMKHK+ W+FN PVDA ALGLHDYH I+K+
Sbjct: 174 NFGNP-GGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKR 232

Query: 388 PMDLGTVKMNVGKNLYTSPLEFASDVRLT 474
           PMDLGTVK N+ KN Y SP EFA+DVRLT
Sbjct: 233 PMDLGTVKSNLAKNFYPSPFEFAADVRLT 261


>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  226 bits (577), Expect = 1e-56
 Identities = 143/294 (48%), Positives = 165/294 (56%), Gaps = 11/294 (3%)
 Frame = +3

Query: 606  NELQGSSWSEVAVPHSPPRPKKPKTSLVNSIPRKVERIPPEPLXXXXXXXXXXXXXXXXR 785
            +ELQGSSW+ +    +P R KKPK + V  I +K ER+                      
Sbjct: 311  DELQGSSWNHIP---TPERVKKPKATPVPHISKKQERM------------------QNHS 349

Query: 786  LAQSPRIPQPMHNPQPMQKPNLSSGSNPTTSNPRSAQSPVPTPSPVKAQPAKSAKQAGAV 965
             A +P +P P  NP                  P   QSP+ TPSPV+A P   +K   A 
Sbjct: 350  SASTPSLPVPPPNP------------------PARQQSPLSTPSPVRAPP---SKPESAA 388

Query: 966  KGASSTKLPKPRAKDSNKREMSMEEKQRLGVGLQNLPQEKMPQLVQIIRKRNEQLAQEGD 1145
            K  +  K PKPRAKD NKR M+MEEK +LGVGLQ+LPQEKMPQLVQIIRKRNE LAQ+GD
Sbjct: 389  KVPAMGKQPKPRAKDPNKRVMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQDGD 448

Query: 1146 EIELDIEALDTETLWELDRFVTNWKKLVSKTKRQALMEN-------YSAVQMVTTDTDEA 1304
            EIELDIEALDTETLWELDRFVTNWKK+VSKTKRQALM N        +A    TT   EA
Sbjct: 449  EIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSVAEA 508

Query: 1305 ---PVSNRNDGSAXXXXXXXXXXXXXXXXXMPENSFPPVEIEKDD-GGHGQDNG 1454
                 S +ND                     P   FPPVEIEKD+ GG  Q+NG
Sbjct: 509  DGPTTSEKNDSFKKPKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGGRDQENG 562



 Score =  138 bits (348), Expect = 4e-30
 Identities = 79/148 (53%), Positives = 91/148 (61%), Gaps = 8/148 (5%)
 Frame = +1

Query: 55  DRIESRQLQLQLPPRSSHESTQFPPRSSHGKMKKLSGQKRMLPLG----PPQINSQSEQQ 222
           DRIES QL    P              S GK KKLSG KR  P G    P ++ +  E +
Sbjct: 127 DRIESGQLSTTNP-------------RSQGKSKKLSGNKRPTPSGSSKDPKKLPNGVENR 173

Query: 223 NVVVPNGG----IDGIEEMLKSCRQILMKLMKHKHSWVFNKPVDAIALGLHDYHLIVKKP 390
           N   P GG      G E M+K CRQIL KLMKHK+ W+FN PVDA ALGLHDYH I+K+P
Sbjct: 174 NFGNPVGGGGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRP 233

Query: 391 MDLGTVKMNVGKNLYTSPLEFASDVRLT 474
           +DLGTVK N+ KN Y SP EFA+DVRLT
Sbjct: 234 IDLGTVKSNLAKNFYPSPFEFAADVRLT 261


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana benthamiana]
          Length = 613

 Score =  225 bits (573), Expect = 3e-56
 Identities = 141/293 (48%), Positives = 164/293 (55%), Gaps = 14/293 (4%)
 Frame = +3

Query: 606  NELQGSSWSEVAVPHSPPRPKKPKTSLVNSIPRKVERIPPEPLXXXXXXXXXXXXXXXXR 785
            +ELQGSSW+ +  P    R KKPK +    I +K ER+                      
Sbjct: 313  DELQGSSWNHIPTPE---RVKKPKPTPAPHISKKQERMMQN-----------------HS 352

Query: 786  LAQSPRIP--QPMHNPQPMQKPNLSSGSNPTTSNPRSAQSPVPTPSPVKAQPAKSAKQAG 959
             A +P +P  QP  NP  +Q+                 QSP+ TPSPV+A PA   + + 
Sbjct: 353  SASTPSLPVQQPPDNPPVVQQ-----------------QSPLSTPSPVRAPPAAKPQSSV 395

Query: 960  AVKGASSTKLPKPRAKDSNKREMSMEEKQRLGVGLQNLPQEKMPQLVQIIRKRNEQLAQE 1139
            A K     K PKPRAKD NKREMSMEEK +LGVGLQ+LPQEKMPQLVQIIRKRNE LAQ+
Sbjct: 396  AAKVPPMEKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQD 455

Query: 1140 GDEIELDIEALDTETLWELDRFVTNWKKLVSKTKRQALMENY-------SAVQMVTTDTD 1298
            GDEIELDIEALDTETLWELDRFVTNWKK+VSKTKRQAL+ N        +A    TT   
Sbjct: 456  GDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTSVA 515

Query: 1299 EA---PVSNRNDG--SAXXXXXXXXXXXXXXXXXMPENSFPPVEIEKDDGGHG 1442
            EA     S +ND                       P   FPPVEI+KD+GG G
Sbjct: 516  EADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATQFPPVEIDKDEGGGG 568



 Score =  140 bits (353), Expect = 1e-30
 Identities = 78/148 (52%), Positives = 92/148 (62%), Gaps = 8/148 (5%)
 Frame = +1

Query: 55  DRIESRQLQLQLPPRSSHESTQFPPRSSHGKMKKLSGQKRMLPLG----PPQINSQSEQQ 222
           DRIES QL    P              SHGK KKLSG KR  P G    P ++ +  + +
Sbjct: 127 DRIESGQLSTSNP-------------RSHGKSKKLSGNKRPTPSGSSKDPKKLPNGVDNR 173

Query: 223 NVVVPNGG----IDGIEEMLKSCRQILMKLMKHKHSWVFNKPVDAIALGLHDYHLIVKKP 390
           N   P GG    I G+E M+K CRQ+L KLMKHK  W+FN PVDA ALGLHDY  I+K+P
Sbjct: 174 NFGNPGGGGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYRQIIKRP 233

Query: 391 MDLGTVKMNVGKNLYTSPLEFASDVRLT 474
           MDLGTVK N+  NLY +P EFA+DVRLT
Sbjct: 234 MDLGTVKSNLSNNLYPTPFEFAADVRLT 261


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score =  218 bits (554), Expect = 5e-54
 Identities = 140/296 (47%), Positives = 164/296 (55%), Gaps = 17/296 (5%)
 Frame = +3

Query: 606  NELQGSSWSEVAVPHSPPRPKKPKTSLVNSIPRKVERIPPEPLXXXXXXXXXXXXXXXXR 785
            +ELQGSSW+ +  P    R KKPK +    I +K ER+                      
Sbjct: 313  DELQGSSWNHIPTPE---RVKKPKPTPAPHISKKQERMMQN-----------------HS 352

Query: 786  LAQSPRIP--QPMHNPQPMQKPNLSSGSNPTTSNPRSAQSPVPTPSPVKAQPAKSAKQAG 959
             A +P +P  QP  NP  +++                 QSP+ TPSPV+A PA   + + 
Sbjct: 353  SASTPSLPVQQPPDNPPVVRQ-----------------QSPLSTPSPVRAPPAAKPQSSV 395

Query: 960  AVKGASSTKLPKPRAKDSNKREMSMEEKQRLGVGLQNLPQEKMPQLVQIIRKRNEQLAQE 1139
            A K     K PKPRAKD NKREMSMEEK +LGVGLQ+LPQEKMPQLVQIIRKRNE LAQ+
Sbjct: 396  AAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQD 455

Query: 1140 GDEIELDIEALDTETLWELDRFVTNWKKLVSKTKRQALMENY-------SAVQMVTT--- 1289
            GDEIELDIEALDTETLWELDRFVTNWKK+VSKTKRQAL+ N        +A    TT   
Sbjct: 456  GDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSV 515

Query: 1290 -DTDEAPVSNRNDG--SAXXXXXXXXXXXXXXXXXMPENSFPPVEIE--KDDGGHG 1442
             + D    S +ND                       P   FPPVEIE  KD+GG G
Sbjct: 516  AEADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGG 571



 Score =  134 bits (336), Expect = 1e-28
 Identities = 75/148 (50%), Positives = 88/148 (59%), Gaps = 8/148 (5%)
 Frame = +1

Query: 55  DRIESRQLQLQLPPRSSHESTQFPPRSSHGKMKKLSGQKRMLPLG----PPQINSQSEQQ 222
           DRIES QL    P              SHGK KKLSG KR  P G    P ++ +  + +
Sbjct: 127 DRIESGQLSTSNP-------------RSHGKSKKLSGNKRPTPSGSSKDPKKLPNGVDNR 173

Query: 223 NVVVPNGG----IDGIEEMLKSCRQILMKLMKHKHSWVFNKPVDAIALGLHDYHLIVKKP 390
           N   P GG    I G E M+K C Q+L KLMKHK  W+FN PVDA ALGLHDYH I+K+P
Sbjct: 174 NFGNPGGGGVKGIIGKENMMKECTQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQIIKRP 233

Query: 391 MDLGTVKMNVGKNLYTSPLEFASDVRLT 474
            DLGT K N+  N Y +P EFA+DVRLT
Sbjct: 234 XDLGTXKSNLSNNFYPTPFEFAADVRLT 261