BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009604
         (1207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   589   e-166
ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   588   e-166
ref|XP_004150610.1| PREDICTED: transcription initiation factor I...   585   e-164
ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabi...   582   e-164
ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidop...   580   e-163

>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  589 bits (1519), Expect = e-166
 Identities = 287/312 (91%), Positives = 305/312 (97%)
 Frame = +3

Query: 57  MADAYCSDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 236
           MADA+C+DCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 237 GPTNPLLADGGLSTVISKPNGVTSDFLTTSLGRWQNRGSNPDRSLILAFKTIATMSDRLG 416
           GP+NPLL DGGLSTVI+KPNGV+ DFL++SLGRWQNRGSNPDR LILAFKTIATMSDRLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 417 LVATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASK 596
           LVATIKDRANEIYKKVEDQKS+RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+K
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 597 KEIGRAKEYIVKQLELEKGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQEAVQKSEEF 776
           KEIGRAKEYIVKQLE EKGQSVEMGTIHAGDFMRRFCSNLGMTNQ VKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240

Query: 777 DIRRSPISIAAAVIYIVTQLSDEKKPLKDVSLATGVAEGTIRNSYKDLYPHLVKIIPSWY 956
           DIRRSP+SIAAAVIYI+TQLSDEKK L+D+S+ATGVAEGTIRNSYKDLYPH+ KIIPSWY
Sbjct: 241 DIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISKIIPSWY 300

Query: 957 AQEEDLKNLCSP 992
           A+EEDL+NLCSP
Sbjct: 301 AKEEDLRNLCSP 312


>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  588 bits (1516), Expect = e-166
 Identities = 286/312 (91%), Positives = 305/312 (97%)
 Frame = +3

Query: 57  MADAYCSDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 236
           MADA+C+DCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 237 GPTNPLLADGGLSTVISKPNGVTSDFLTTSLGRWQNRGSNPDRSLILAFKTIATMSDRLG 416
           GP+NPLL DGGLSTVI+KPNGV+ DFL++SLGRWQNRGSNPDR LILAFKTIATMSDRLG
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 417 LVATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASK 596
           LVATIKDRANEIYKKVEDQKS+RGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+K
Sbjct: 121 LVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 597 KEIGRAKEYIVKQLELEKGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQEAVQKSEEF 776
           KEIGRAKEYIVKQLE EKGQSVEMGTIHAGDFMRRFCSNLGMTNQ VKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEF 240

Query: 777 DIRRSPISIAAAVIYIVTQLSDEKKPLKDVSLATGVAEGTIRNSYKDLYPHLVKIIPSWY 956
           DIRRSP+SIAAAVIYI+TQLSDEKK L+D+S+ATGVAEGTIRNSYKDLYPH+ +IIPSWY
Sbjct: 241 DIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWY 300

Query: 957 AQEEDLKNLCSP 992
           A+EEDL+NLCSP
Sbjct: 301 AKEEDLRNLCSP 312


>ref|XP_004150610.1| PREDICTED: transcription initiation factor IIB-2-like [Cucumis
           sativus] gi|449529834|ref|XP_004171903.1| PREDICTED:
           transcription initiation factor IIB-2-like [Cucumis
           sativus]
          Length = 312

 Score =  585 bits (1507), Expect = e-164
 Identities = 285/312 (91%), Positives = 302/312 (96%)
 Frame = +3

Query: 57  MADAYCSDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 236
           M+DA+CSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 237 GPTNPLLADGGLSTVISKPNGVTSDFLTTSLGRWQNRGSNPDRSLILAFKTIATMSDRLG 416
           GPTNPLLADGGLSTVI+KPNG T +FL++SLGRWQNRGSNPDR LILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 417 LVATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASK 596
           LVATIKDRANEIYK+VEDQKSSRGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+K
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 597 KEIGRAKEYIVKQLELEKGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQEAVQKSEEF 776
           KEIGRAKEYIVKQL LE GQSVEMGTIHAGDFMRRFCSNLGM NQ VKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 777 DIRRSPISIAAAVIYIVTQLSDEKKPLKDVSLATGVAEGTIRNSYKDLYPHLVKIIPSWY 956
           DIRRSPISIAAAVIYI+TQLSD+KKPLKD+S+ATGVAEGTIRNSYKDLYPH+ KI+P WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKILPGWY 300

Query: 957 AQEEDLKNLCSP 992
           A+EEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312


>ref|XP_002882661.1| transcription initiation factor IIB-2 [Arabidopsis lyrata subsp.
           lyrata] gi|297328501|gb|EFH58920.1| transcription
           initiation factor IIB-2 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 312

 Score =  582 bits (1501), Expect = e-164
 Identities = 285/312 (91%), Positives = 305/312 (97%)
 Frame = +3

Query: 57  MADAYCSDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 236
           M+DA+CSDCK++TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 237 GPTNPLLADGGLSTVISKPNGVTSDFLTTSLGRWQNRGSNPDRSLILAFKTIATMSDRLG 416
           GPTNPLLADGGL+TVISKPNG + DFL++SLGRWQNRGSNPDR LI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 417 LVATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASK 596
           LVATIKDRANEIYK+VEDQKSSRGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+K
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 597 KEIGRAKEYIVKQLELEKGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQEAVQKSEEF 776
           KEIGRAKEYIVKQL LE GQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240

Query: 777 DIRRSPISIAAAVIYIVTQLSDEKKPLKDVSLATGVAEGTIRNSYKDLYPHLVKIIPSWY 956
           DIRRSPISIAAAVIYI+TQLSDEKKPL+D+S+ATGVAEGTIRNSYKDLYPHL KIIP+WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWY 300

Query: 957 AQEEDLKNLCSP 992
           A+EEDLKNL SP
Sbjct: 301 AKEEDLKNLQSP 312


>ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
           gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName:
           Full=Transcription initiation factor IIB-2; AltName:
           Full=General transcription factor TFIIB-2;
           Short=AtTFIIB2 gi|6056193|gb|AAF02810.1|AC009400_6
           transcription initiation factor IIB (TFIIB) [Arabidopsis
           thaliana] gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7
           [Arabidopsis thaliana] gi|16974427|gb|AAL31139.1|
           AT3g10330/F14P13_7 [Arabidopsis thaliana]
           gi|21593436|gb|AAM65403.1| transcription initiation
           factor IIB (TFIIB) [Arabidopsis thaliana]
           gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
           gi|332641371|gb|AEE74892.1| transcription initiation
           factor IIB-2 [Arabidopsis thaliana]
          Length = 312

 Score =  580 bits (1495), Expect = e-163
 Identities = 284/312 (91%), Positives = 304/312 (97%)
 Frame = +3

Query: 57  MADAYCSDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 236
           M+DA+CSDCK++TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 237 GPTNPLLADGGLSTVISKPNGVTSDFLTTSLGRWQNRGSNPDRSLILAFKTIATMSDRLG 416
           GPTNPLLADGGL+TVISKPNG + DFL++SLGRWQNRGSNPDR LI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 417 LVATIKDRANEIYKKVEDQKSSRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASK 596
           LVATIKDRANEIYK+VEDQKSSRGRNQDA+LAACLYIACRQEDKPRTVKEICSVANGA+K
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 597 KEIGRAKEYIVKQLELEKGQSVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQEAVQKSEEF 776
           KEIGRAKEYIVKQL LE GQ VEMGTIHAGDFMRRFCSNLGMTNQTVKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240

Query: 777 DIRRSPISIAAAVIYIVTQLSDEKKPLKDVSLATGVAEGTIRNSYKDLYPHLVKIIPSWY 956
           DIRRSPISIAAAVIYI+TQLSDEKKPL+D+S+ATGVAEGTIRNSYKDLYPHL KIIP+WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWY 300

Query: 957 AQEEDLKNLCSP 992
           A+EEDLKNL SP
Sbjct: 301 AKEEDLKNLQSP 312