BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009251
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   184   8e-45
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   182   2e-44
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   172   2e-41
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   171   6e-41
gb|AAX22257.1| At3g61420 [Arabidopsis thaliana]                       170   1e-40

>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  184 bits (466), Expect = 8e-45
 Identities = 95/135 (70%), Positives = 104/135 (77%)
 Frame = -1

Query: 407 LTEAEFWATRKKLLDEKISSKSKQRVGLKSDMIFNVKPSSDGQSNRVKYNLTPEIIHQIF 228
           LTEAEFWATRKKLLD   S  SKQRVG KS MI ++KP +DG++NRV +NLTPEIIHQIF
Sbjct: 197 LTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIF 256

Query: 227 AEKPAVRRAYLNLVPKKMTETDFWIKYWRAEYLHSTKNIVXXXXXXXXXXXXAVFLKQDD 48
           AEKPAV +A+LN VP KMTE DFW KY RAEYLH T+N V            AVFLK DD
Sbjct: 257 AEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDD 316

Query: 47  ILASEARRKIRRVDP 3
           ILASEARRKIRRVDP
Sbjct: 317 ILASEARRKIRRVDP 331


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  182 bits (463), Expect = 2e-44
 Identities = 94/135 (69%), Positives = 104/135 (77%)
 Frame = -1

Query: 407 LTEAEFWATRKKLLDEKISSKSKQRVGLKSDMIFNVKPSSDGQSNRVKYNLTPEIIHQIF 228
           LTEAEFWATRKKLLD   S  SKQRVG KS MI ++KP +DG++NRV +NLTPEIIHQIF
Sbjct: 154 LTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIF 213

Query: 227 AEKPAVRRAYLNLVPKKMTETDFWIKYWRAEYLHSTKNIVXXXXXXXXXXXXAVFLKQDD 48
           AEKPAV +A+LN VP KMTE DFW KY RAEYLH T+N V            AVFLK DD
Sbjct: 214 AEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDD 273

Query: 47  ILASEARRKIRRVDP 3
           ILA+EARRKIRRVDP
Sbjct: 274 ILANEARRKIRRVDP 288


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  172 bits (437), Expect = 2e-41
 Identities = 88/135 (65%), Positives = 103/135 (76%)
 Frame = -1

Query: 407 LTEAEFWATRKKLLDEKISSKSKQRVGLKSDMIFNVKPSSDGQSNRVKYNLTPEIIHQIF 228
           LTE EFWATRKKLL +    KSKQ+VGLKS M+  +KPS+DG++NRV +NLTPEII QIF
Sbjct: 149 LTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIF 208

Query: 227 AEKPAVRRAYLNLVPKKMTETDFWIKYWRAEYLHSTKNIVXXXXXXXXXXXXAVFLKQDD 48
           AEKPAVR+A++N VP KMTE DFW KY+RAEYL+STKN              AVFLK D+
Sbjct: 209 AEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDE 268

Query: 47  ILASEARRKIRRVDP 3
           ILA E R+KIRRVDP
Sbjct: 269 ILARETRQKIRRVDP 283


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
           thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| transcription initiation
           factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  171 bits (433), Expect = 6e-41
 Identities = 87/135 (64%), Positives = 102/135 (75%)
 Frame = -1

Query: 407 LTEAEFWATRKKLLDEKISSKSKQRVGLKSDMIFNVKPSSDGQSNRVKYNLTPEIIHQIF 228
           LTE EFWATRKKLL +    KSKQ++GLKS M+  +KPS+DG++NRV +NLTPEII QIF
Sbjct: 149 LTEDEFWATRKKLLGKDSIRKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIF 208

Query: 227 AEKPAVRRAYLNLVPKKMTETDFWIKYWRAEYLHSTKNIVXXXXXXXXXXXXAVFLKQDD 48
           AEKPAVR+A++N VP KMTE DFW KY+RAEYL+STKN              AVFLK D+
Sbjct: 209 AEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDE 268

Query: 47  ILASEARRKIRRVDP 3
           ILA E R KIRRVDP
Sbjct: 269 ILARETRHKIRRVDP 283


>gb|AAX22257.1| At3g61420 [Arabidopsis thaliana]
          Length = 332

 Score =  170 bits (430), Expect = 1e-40
 Identities = 86/135 (63%), Positives = 104/135 (77%)
 Frame = -1

Query: 407 LTEAEFWATRKKLLDEKISSKSKQRVGLKSDMIFNVKPSSDGQSNRVKYNLTPEIIHQIF 228
           LTE EFW+TRKKLL +    KSKQ++GLKS M+  +KPS+DG++NRV +NLT EII QIF
Sbjct: 144 LTEDEFWSTRKKLLGKDSIRKSKQQMGLKSMMVSGIKPSTDGRTNRVTFNLTSEIIFQIF 203

Query: 227 AEKPAVRRAYLNLVPKKMTETDFWIKYWRAEYLHSTKNIVXXXXXXXXXXXXAVFLKQDD 48
           AEKPAVR+A++N VPKKMTE DFW KY+RAEYL+STKN              AVFLK D+
Sbjct: 204 AEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDE 263

Query: 47  ILASEARRKIRRVDP 3
           ILA EAR+K+RRVDP
Sbjct: 264 ILAQEARQKMRRVDP 278