BLASTX nr result
ID: Cnidium21_contig00009246
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00009246
(2205 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group] 161 4e-68
gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays] 154 2e-63
emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa Japonica Group] 153 7e-63
gb|AAS55774.2| putative polyprotein [Oryza sativa Japonica Group] 151 1e-62
gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [... 155 2e-62
>emb|CAH66499.1| H0321H01.8 [Oryza sativa Indica Group]
Length = 1602
Score = 161 bits (408), Expect(4) = 4e-68
Identities = 76/143 (53%), Positives = 98/143 (68%), Gaps = 5/143 (3%)
Frame = -2
Query: 920 PDRL-----LQPLNIPHEPWRDIAMDFITGLPK*KGFDVIWVIVNRFSRYSHFIALAHPI 756
PDRL LQPL +P W+ +++DFI GLPK G++ I V+V+RFS+Y+HF+AL HP
Sbjct: 1157 PDRLKYPGLLQPLPVPEGSWQAVSLDFIEGLPKSAGYNCILVVVDRFSKYAHFVALKHPF 1216
Query: 755 TAKGLAMTFFDQIYKLHGLPETTVSDRDSLPLSDFWQSLFKLSGTRLLYSSAYHPQTHGS 576
TA +A + IYKLHGLP+T VSDRD + S W+ LF +GT+L YSSAYHPQ+ G
Sbjct: 1217 TAIDVAQAYMFHIYKLHGLPQTIVSDRDKIFTSQLWEQLFLRAGTKLHYSSAYHPQSDGQ 1276
Query: 575 TERINQCLHQYLRSLTGHSPKHW 507
TER+NQCL YLR +P W
Sbjct: 1277 TERVNQCLEIYLRCFVHSTPSKW 1299
Score = 87.0 bits (214), Expect(4) = 4e-68
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Frame = -1
Query: 504 LPAAEWWYNTTFHSTLNTTPFQVLYGFKRRHLAWQSR----PSASTNIENLELLIDTKQQ 337
L AE+WYN+T+HS+L TTPF+VLYG+ H SR P S + + + + QQ
Sbjct: 1303 LHLAEYWYNSTYHSSLGTTPFEVLYGYPPNHFGISSRDCAIPELSVWLRDRKFMQQLVQQ 1362
Query: 336 QWDKLTEAQTRMKKYADAKRTTREFQEGKWVYLKLHPYI 220
L AQ +MK +AD KR+ R+F G WVYLKL PY+
Sbjct: 1363 H---LHRAQQQMKHFADKKRSFRQFTIGDWVYLKLQPYV 1398
Score = 40.8 bits (94), Expect(4) = 4e-68
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = -2
Query: 125 VAYKLNLPATSRVQPVFHVSQLKLARASTE 36
VAYKL LP TS V PVFHVS LK A+ T+
Sbjct: 1427 VAYKLQLPETSSVHPVFHVSLLKPAKGFTQ 1456
Score = 39.7 bits (91), Expect(4) = 4e-68
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3
Query: 226 LYPYRQTSVAVRKNLKLAAKHFDPYEILQKLGHV 125
L PY Q+SVA R N KLA K++ P++++ KLG V
Sbjct: 1394 LQPYVQSSVAPRANHKLAFKYYGPFQVIDKLGTV 1427
>gb|AAL76001.1|AF466646_9 putative gag-pol polyprotein [Zea mays]
Length = 2396
Score = 154 bits (390), Expect(4) = 2e-63
Identities = 71/143 (49%), Positives = 94/143 (65%), Gaps = 5/143 (3%)
Frame = -2
Query: 920 PDR-----LLQPLNIPHEPWRDIAMDFITGLPK*KGFDVIWVIVNRFSRYSHFIALAHPI 756
PDR LLQPL +P + W I++DFI GLP+ ++ I V+V++FS+Y HF+ L HP
Sbjct: 1175 PDRAKYPGLLQPLEVPPQAWHTISLDFIEGLPRSAHYNCILVVVDKFSKYGHFLPLLHPF 1234
Query: 755 TAKGLAMTFFDQIYKLHGLPETTVSDRDSLPLSDFWQSLFKLSGTRLLYSSAYHPQTHGS 576
TA +A F D +YKLHGLP +SDRD + S FWQ LF+++GT L SS+YHPQ+ G
Sbjct: 1235 TAAKVARVFLDNVYKLHGLPVNIISDRDRIFTSSFWQQLFQITGTNLSMSSSYHPQSDGQ 1294
Query: 575 TERINQCLHQYLRSLTGHSPKHW 507
TER+NQCL +LR P W
Sbjct: 1295 TERLNQCLETFLRCYVHTCPSRW 1317
Score = 82.0 bits (201), Expect(4) = 2e-63
Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Frame = -1
Query: 504 LPAAEWWYNTTFHSTLNTTPFQVLYGFKRRHL-----AWQSRPSASTNIENLELLIDTKQ 340
L AE+WYNTT HSTL TPF+VLYG RH +P T ++ EL+ +
Sbjct: 1321 LSVAEYWYNTTVHSTLGRTPFEVLYGHTPRHFGILVDTVVPQPELETWLKERELMTKVIK 1380
Query: 339 QQWDKLTEAQTRMKKYADAKRTTREFQEGKWVYLKLHPYI 220
L AQ RMK+ AD +R+ R F G WVYLKL PYI
Sbjct: 1381 LH---LHRAQDRMKRQADKQRSERVFSVGDWVYLKLQPYI 1417
Score = 38.1 bits (87), Expect(4) = 2e-63
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -3
Query: 226 LYPYRQTSVAVRKNLKLAAKHFDPYEILQKLGHV 125
L PY Q+SVA R N KL+ K F P++I +LG V
Sbjct: 1413 LQPYIQSSVATRSNHKLSFKFFGPFQITDRLGSV 1446
Score = 38.1 bits (87), Expect(4) = 2e-63
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 125 VAYKLNLPATSRVQPVFHVSQLK 57
VAY+L LPA+S + P+FHVSQLK
Sbjct: 1446 VAYRLALPASSSIHPIFHVSQLK 1468
>emb|CAE05274.1| OSJNBb0014D23.8 [Oryza sativa Japonica Group]
Length = 1545
Score = 153 bits (387), Expect(4) = 7e-63
Identities = 75/143 (52%), Positives = 94/143 (65%), Gaps = 5/143 (3%)
Frame = -2
Query: 920 PDR-----LLQPLNIPHEPWRDIAMDFITGLPK*KGFDVIWVIVNRFSRYSHFIALAHPI 756
PDR LLQPL +P W+ + MDFI GLPK F+ I+V+V++FS+YSHFI L+HP
Sbjct: 617 PDRSKYPGLLQPLPVPEGAWQVLTMDFIEGLPKSGKFNSIFVVVDKFSKYSHFIPLSHPF 676
Query: 755 TAKGLAMTFFDQIYKLHGLPETTVSDRDSLPLSDFWQSLFKLSGTRLLYSSAYHPQTHGS 576
+A +A F IYKLHGLP +SDRD + S FW+ LF SGT+L ++AYHPQT G
Sbjct: 677 SAIDVAQAFMCNIYKLHGLPRFIISDRDRIFTSQFWEQLFPRSGTQLQLTTAYHPQTDGQ 736
Query: 575 TERINQCLHQYLRSLTGHSPKHW 507
TER+NQCL YLR P W
Sbjct: 737 TERVNQCLEIYLRCFVHAMPSKW 759
Score = 79.3 bits (194), Expect(4) = 7e-63
Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Frame = -1
Query: 495 AEWWYNTTFHSTLNTTPFQVLYGFKRRHLAWQ----SRPSASTNIENLELLIDTKQQQWD 328
AE+W+NT++HSTL +PF+VLYG+ H + S P + +L+ +Q
Sbjct: 766 AEFWFNTSYHSTLFKSPFEVLYGYPPGHFGIREDSCSIPDLHAWLSERKLMTQLLKQH-- 823
Query: 327 KLTEAQTRMKKYADAKRTTREFQEGKWVYLKLHPYI 220
L AQ +MK YAD KR+ REF G WVYLKL PYI
Sbjct: 824 -LIRAQQQMKVYADKKRSFREFVVGDWVYLKLQPYI 858
Score = 39.3 bits (90), Expect(4) = 7e-63
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -3
Query: 226 LYPYRQTSVAVRKNLKLAAKHFDPYEILQKLGHV 125
L PY Q+SVA R N KL K+F P++IL K+G V
Sbjct: 854 LQPYIQSSVARRANHKLCFKYFGPFQILHKVGKV 887
Score = 39.3 bits (90), Expect(4) = 7e-63
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -2
Query: 125 VAYKLNLPATSRVQPVFHVSQLKLA 51
VAY+L LPA S V PVFHVSQLK A
Sbjct: 887 VAYQLQLPANSAVHPVFHVSQLKHA 911
>gb|AAS55774.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 2108
Score = 151 bits (381), Expect(4) = 1e-62
Identities = 67/135 (49%), Positives = 94/135 (69%)
Frame = -2
Query: 911 LLQPLNIPHEPWRDIAMDFITGLPK*KGFDVIWVIVNRFSRYSHFIALAHPITAKGLAMT 732
LLQP+ IP W+ I+MDFI GLP+ ++ I VIV++F++++HF+ L+HP TA +A
Sbjct: 1814 LLQPVQIPEHAWQVISMDFIEGLPRSASYNSILVIVDKFTKFAHFLPLSHPFTAVSVAQL 1873
Query: 731 FFDQIYKLHGLPETTVSDRDSLPLSDFWQSLFKLSGTRLLYSSAYHPQTHGSTERINQCL 552
F D+I+ +HGLP+ +SDRD + S FW+ LF+ SGT+L SS+YHPQT G TER+NQCL
Sbjct: 1874 FMDRIHSIHGLPQAIISDRDRVFTSIFWKELFRRSGTQLQMSSSYHPQTDGQTERVNQCL 1933
Query: 551 HQYLRSLTGHSPKHW 507
+LR P W
Sbjct: 1934 EMFLRCFVHACPSRW 1948
Score = 78.6 bits (192), Expect(4) = 1e-62
Identities = 44/103 (42%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Frame = -1
Query: 504 LPAAEWWYNTTFHSTLNTTPFQVLYGFKRRHLAWQ----SRPSA----STNIENLELLID 349
L A++WYNT+FHSTL TPF+ ++G K RH PSA + N++ LI
Sbjct: 1952 LSLAQFWYNTSFHSTLMLTPFEAMFGHKPRHFGLSVDSVGVPSALDSWMQDRHNMQSLI- 2010
Query: 348 TKQQQWDKLTEAQTRMKKYADAKRTTREFQEGKWVYLKLHPYI 220
+ L AQ RMK AD+KRT R F G WV++KL PY+
Sbjct: 2011 -----YHHLVRAQQRMKSQADSKRTDRVFAVGDWVFMKLQPYV 2048
Score = 42.7 bits (99), Expect(4) = 1e-62
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = -2
Query: 125 VAYKLNLPATSRVQPVFHVSQLKLARASTE 36
VAYKL LPATS + PV HVSQLK A A++E
Sbjct: 2077 VAYKLQLPATSLIHPVVHVSQLKKAVAASE 2106
Score = 38.1 bits (87), Expect(4) = 1e-62
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -3
Query: 226 LYPYRQTSVAVRKNLKLAAKHFDPYEILQKLGHV 125
L PY Q SV R N KLA K + P++ILQ++G V
Sbjct: 2044 LQPYVQQSVMTRANQKLAFKFYGPFQILQRVGSV 2077
>gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 155 bits (391), Expect(4) = 2e-62
Identities = 73/138 (52%), Positives = 88/138 (63%)
Frame = -2
Query: 920 PDRLLQPLNIPHEPWRDIAMDFITGLPK*KGFDVIWVIVNRFSRYSHFIALAHPITAKGL 741
P LL PL IP + W D+++DF+ GLP F+ I V+V+R S+YSHFI L HP TAK +
Sbjct: 1254 PAGLLSPLPIPQQIWSDVSLDFVEGLPSSNRFNCILVVVDRLSKYSHFIPLKHPFTAKTV 1313
Query: 740 AMTFFDQIYKLHGLPETTVSDRDSLPLSDFWQSLFKLSGTRLLYSSAYHPQTHGSTERIN 561
F + KLHG P T VSDRD + LS FW LFKL GT L S+AYHPQT G TE +N
Sbjct: 1314 VEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVN 1373
Query: 560 QCLHQYLRSLTGHSPKHW 507
+CL YLR G P W
Sbjct: 1374 RCLESYLRCFAGRRPTSW 1391
Score = 73.9 bits (180), Expect(4) = 2e-62
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Frame = -1
Query: 528 RPLS*ALGLPAAEWWYNTTFHSTLNTTPFQVLYGFKRR-HLAWQSRPSASTNIENL---- 364
RP S LP AE+WYNT++HS TTPFQ +YG + L + P+ + N+E L
Sbjct: 1387 RPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDR 1446
Query: 363 -ELLIDTKQQQWDKLTEAQTRMKKYADAKRTTREFQEGKWVYLKLHPY 223
+L++ + + L AQ +MKK AD R F+ +WVYLKL PY
Sbjct: 1447 DGMLVELR----ENLEIAQAQMKKAADKSRRDVAFEIDEWVYLKLRPY 1490
Score = 42.7 bits (99), Expect(4) = 2e-62
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = -3
Query: 226 LYPYRQTSVAVRKNLKLAAKHFDPYEILQKLGHV 125
L PYRQ+SVA RKN KL+ ++F P+++L ++G V
Sbjct: 1487 LRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQV 1520
Score = 38.1 bits (87), Expect(4) = 2e-62
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -2
Query: 125 VAYKLNLPATSRVQPVFHVSQLKLA 51
VAYKL LP S + PVFHVSQLK A
Sbjct: 1520 VAYKLQLPEHSTIHPVFHVSQLKRA 1544