BLASTX nr result
ID: Cnidium21_contig00009051
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00009051
(1555 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum... 646 0.0
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 644 0.0
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 632 0.0
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 631 0.0
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D sub... 618 0.0
>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 646 bits (1667), Expect(2) = 0.0
Identities = 306/450 (68%), Positives = 371/450 (82%), Gaps = 4/450 (0%)
Frame = +3
Query: 3 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSYWGKICFVSTPDGE 182
R E++SGVVA L RTNPLQ ++MR++RQ+V YTGK+G ARYPHPS+WGK+CF+STPDGE
Sbjct: 499 RMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGE 558
Query: 183 NCGLIKNLASTGLVSTSVLEPIIDKLLDCGMEELVNDTSTSLHGKNFIFLDGELVGVCHD 362
NCGL+KNLAS GLVST +L+P ++ L CGM++LV+D STSLHGK + LDGE VGVC D
Sbjct: 559 NCGLVKNLASMGLVSTIILKPFLETLFRCGMQKLVDDCSTSLHGKQKVLLDGEWVGVCED 618
Query: 363 SASFVAKLRSMRCKKEVPSQVEIKRDSQQGEVRIFCDAGRVLRPLLVVRNIMRIKSINKG 542
SA FV+KLR R + EVP QVE+KRD QGEVRIF D GR+LRPLLVV N+ +IK++ G
Sbjct: 619 SALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGG 678
Query: 543 ECGFQSLLDNXXXXXXXXXXXXDCRTAWGIEYLRTENKKDPPMKYTHCELDMSFLLGLSC 722
+ GFQSLLDN DCRTAWG+EY+ +K++PP KYTHCELDMSFLLGLSC
Sbjct: 679 DYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSC 738
Query: 723 GLVPFANHNHAKRVLYQSQKHSHQAIGYSTTNPRIRADTITHQLYYPQKPLFRTMLSDCL 902
G++PFANH+HA+RVLYQS+KHS QAIG+ST NP R DT THQLYYPQ+PLFRTML+D L
Sbjct: 739 GIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQLYYPQRPLFRTMLADSL 798
Query: 903 GRPDC----NIMPSRPEFYNGQCAIVAVNVHFGYNQEDSLVMNRASTERGMFRSEHIRSY 1070
G+P C M RPE++NGQCAIVAVNVH GYNQEDSLVMNRAS ERGMFRSEH+RSY
Sbjct: 799 GKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSY 858
Query: 1071 KTDIYNEEAFSKPQKVEDSMKFGKIQSRVGRVDSLEEDGFPYIGASLRAGDIVIGKHAES 1250
K ++ N+EA +K K+EDS+ FGK QS++GRVDSL++DGFP+IGA+L++GDI+IGK +ES
Sbjct: 859 KAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKFSES 918
Query: 1251 GADQSLKLKHTERGTVHRVVLSANDEGKNF 1340
GAD S+KLKHTERG V +V+LSANDEGKNF
Sbjct: 919 GADHSVKLKHTERGMVQKVLLSANDEGKNF 948
Score = 87.4 bits (215), Expect(2) = 0.0
Identities = 42/44 (95%), Positives = 42/44 (95%)
Frame = +1
Query: 1423 VSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPD 1554
VSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPD
Sbjct: 951 VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 994
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 644 bits (1661), Expect(2) = 0.0
Identities = 309/451 (68%), Positives = 374/451 (82%), Gaps = 5/451 (1%)
Frame = +3
Query: 3 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSYWGKICFVSTPDGE 182
R E+ISGVVA L RTNPLQ ++MR+TRQ+V+YTGK+G ARYPHPS+WGK+CF+STPDGE
Sbjct: 486 RMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGE 545
Query: 183 NCGLIKNLASTGLVSTSVLEPIIDKLLDCGMEELVNDTSTSLHGKNFIFLDGELVGVCHD 362
NCGL+KNLA TGLVST VL+P++DKL DCGME+LV+DTST L GKN +FLDG+ VGVC D
Sbjct: 546 NCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCED 605
Query: 363 SASFVAKLRSMRCKKEVPSQVEIKRDSQQGEVRIFCDAGRVLRPLLVVRNIMRIKSINKG 542
SFV +LR+ R KE+P QVEIKRD QQGEVRIF DAGR+LRPLLVV N+ ++K+
Sbjct: 606 PISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGD 665
Query: 543 ECGFQSLLDNXXXXXXXXXXXXDCRTAWGIEYLRTENKKDPPMKYTHCELDMSFLLGLSC 722
+ FQSLLD DC TAWGI+YL + DPP+KYTHCELDMSFLLGLSC
Sbjct: 666 DFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYL-LKGHDDPPVKYTHCELDMSFLLGLSC 724
Query: 723 GLVPFANHNHAKRVLYQSQKHSHQAIGYSTTNPRIRADTITHQLYYPQKPLFRTMLSDCL 902
G++P+ANH+HA+RVLYQS+KHS QAIG+STTNP IR DT++HQLYYPQ+PLFRTM+SDCL
Sbjct: 725 GIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCL 784
Query: 903 GRPDCN-----IMPSRPEFYNGQCAIVAVNVHFGYNQEDSLVMNRASTERGMFRSEHIRS 1067
G+P + I+P RPE++NGQ AIVAVNVH GYNQEDSLVMNRAS ERGMFRSEHIRS
Sbjct: 785 GKPGYSEGHKGIVP-RPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 843
Query: 1068 YKTDIYNEEAFSKPQKVEDSMKFGKIQSRVGRVDSLEEDGFPYIGASLRAGDIVIGKHAE 1247
YK+++ N E+ K +K EDS+ FGK+QS++GRVDSL++DGFP+IGA+L+ GDIVIG+ AE
Sbjct: 844 YKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAE 903
Query: 1248 SGADQSLKLKHTERGTVHRVVLSANDEGKNF 1340
SG D S+KLKHTERG V +VV+SAND+GKNF
Sbjct: 904 SGVDHSIKLKHTERGMVQKVVVSANDDGKNF 934
Score = 86.3 bits (212), Expect(2) = 0.0
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +1
Query: 1423 VSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPD 1554
VSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPD
Sbjct: 937 VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 980
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 632 bits (1629), Expect(2) = 0.0
Identities = 309/450 (68%), Positives = 365/450 (81%), Gaps = 4/450 (0%)
Frame = +3
Query: 3 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSYWGKICFVSTPDGE 182
+ E+ISGVVA L RTNPLQ+I++MR+TRQ+V YTGK+G ARYPHPS+WGKICF+STPDGE
Sbjct: 306 KMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGE 365
Query: 183 NCGLIKNLASTGLVSTSVLEPIIDKLLDCGMEELVNDTSTSLHGKNFIFLDGELVGVCHD 362
NCGL+KNLA TGLVST++ E +DKLLD GME+LV+DTST L GK +FLDG VGVC D
Sbjct: 366 NCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNWVGVCGD 425
Query: 363 SASFVAKLRSMRCKKEVPSQVEIKRDSQQGEVRIFCDAGRVLRPLLVVRNIMRIKSINKG 542
S SFVA LR R +KEVP QVEIKRD Q EVR+F DAGR+LRPLLVV N+ +IK+ G
Sbjct: 426 SVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGG 485
Query: 543 ECGFQSLLDNXXXXXXXXXXXXDCRTAWGIEYLRTENKKDPPMKYTHCELDMSFLLGLSC 722
+ FQSLLD DCRTAWGI YL EN+ +KYTHCELDMSFLLGLS
Sbjct: 486 DYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSA 545
Query: 723 GLVPFANHNHAKRVLYQSQKHSHQAIGYSTTNPRIRADTITHQLYYPQKPLFRTMLSDCL 902
++PFANH+HA+RVLYQS+KHS QA+G++TTNP IR DT THQLYYPQ+PLFRTM+SDCL
Sbjct: 546 AIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRTMVSDCL 605
Query: 903 GRPDC----NIMPSRPEFYNGQCAIVAVNVHFGYNQEDSLVMNRASTERGMFRSEHIRSY 1070
G+P N + R E++NGQCAIVAVNVH GYNQEDSLVMNRAS ERGMFRSEHIRSY
Sbjct: 606 GKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 665
Query: 1071 KTDIYNEEAFSKPQKVEDSMKFGKIQSRVGRVDSLEEDGFPYIGASLRAGDIVIGKHAES 1250
K D+ N+E+ K K EDS+ FGK+QS++GRVDSL++DGFP+IGA+L+ GDIV+G+ AES
Sbjct: 666 KADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVVGRCAES 725
Query: 1251 GADQSLKLKHTERGTVHRVVLSANDEGKNF 1340
GAD S+KLKHTERG V +VVLSANDEGKNF
Sbjct: 726 GADHSIKLKHTERGMVQKVVLSANDEGKNF 755
Score = 86.3 bits (212), Expect(2) = 0.0
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +1
Query: 1423 VSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPD 1554
VSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPD
Sbjct: 758 VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 801
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 631 bits (1628), Expect(2) = 0.0
Identities = 303/446 (67%), Positives = 365/446 (81%)
Frame = +3
Query: 3 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSYWGKICFVSTPDGE 182
R E+ISGVVA L RTNPLQ ++MR+TRQ+V+YTGK+G ARYPHPS+WGK+CF+STPDGE
Sbjct: 522 RMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGE 581
Query: 183 NCGLIKNLASTGLVSTSVLEPIIDKLLDCGMEELVNDTSTSLHGKNFIFLDGELVGVCHD 362
NCGL+KNLA TGLVST VL+P++DKL DCGME+LV+DTST L GKN +FLDG+ VGVC D
Sbjct: 582 NCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCED 641
Query: 363 SASFVAKLRSMRCKKEVPSQVEIKRDSQQGEVRIFCDAGRVLRPLLVVRNIMRIKSINKG 542
SFV +LR+ R KE+P QVEIKRD QQGEVRIF DAGR+LRPLLVV N+ ++K+
Sbjct: 642 PISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGD 701
Query: 543 ECGFQSLLDNXXXXXXXXXXXXDCRTAWGIEYLRTENKKDPPMKYTHCELDMSFLLGLSC 722
+ FQSLLD DC TAWGI+YL + DPP+KYTHCELDMSFLLGLSC
Sbjct: 702 DFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYL-LKGHDDPPVKYTHCELDMSFLLGLSC 760
Query: 723 GLVPFANHNHAKRVLYQSQKHSHQAIGYSTTNPRIRADTITHQLYYPQKPLFRTMLSDCL 902
G++P+ANH+HA+RVLYQS+KHS QAIG+STTNP IR DT++HQLYYPQ+PLFRTM+SD
Sbjct: 761 GIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDL- 819
Query: 903 GRPDCNIMPSRPEFYNGQCAIVAVNVHFGYNQEDSLVMNRASTERGMFRSEHIRSYKTDI 1082
RPE++NGQ AIVAVNVH GYNQEDSLVMNRAS ERGMFRSEHIRSYK+++
Sbjct: 820 ---------PRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEV 870
Query: 1083 YNEEAFSKPQKVEDSMKFGKIQSRVGRVDSLEEDGFPYIGASLRAGDIVIGKHAESGADQ 1262
N E+ K +K EDS+ FGK+QS++GRVDSL++DGFP+IGA+L+ GDIVIG+ AESG D
Sbjct: 871 DNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDH 930
Query: 1263 SLKLKHTERGTVHRVVLSANDEGKNF 1340
S+KLKHTERG V +VV+SAND+GKNF
Sbjct: 931 SIKLKHTERGMVQKVVVSANDDGKNF 956
Score = 86.3 bits (212), Expect(2) = 0.0
Identities = 41/44 (93%), Positives = 42/44 (95%)
Frame = +1
Query: 1423 VSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPD 1554
VSLRQVR+P LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPD
Sbjct: 959 VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 1002
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 618 bits (1594), Expect(2) = 0.0
Identities = 307/456 (67%), Positives = 370/456 (81%), Gaps = 10/456 (2%)
Frame = +3
Query: 3 RAEKISGVVANLSRTNPLQSISEMRRTRQRVEYTGKIGGARYPHPSYWGKICFVSTPDGE 182
R E+ISGVVAN+ RTNPLQ+++E+RR RQ+V+YTGK+G ARYPHPS+WGK+CF+STPDGE
Sbjct: 487 RMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGE 546
Query: 183 NCGLIKNLASTGLVST---SVLEPIIDKLLDCGMEELVNDTSTSLHGKNFIFLDGELVGV 353
NCGL+KNLA TGLVST +V E I+ KLLDCGMEELV+DTST L K+ + L+G+ VGV
Sbjct: 547 NCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLLNGDWVGV 606
Query: 354 CHDSASFVAKLRSMRCKKEVPSQVEIKRDSQQGEVRIFCDAGRVLRPLLVVRNIMRIKSI 533
C DS+SFVA+LRS R + E+P QVEIKRD Q EVRI+ DAGR+LRPLLVV N+++IK
Sbjct: 607 CPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGF 666
Query: 534 NKGECGFQSLLDNXXXXXXXXXXXXDCRTAWGIEYLRTENKKDPPMKYTHCELDMSFLLG 713
FQSLLD DC TAWG+EYL + K +KYTHCELDMSFLLG
Sbjct: 667 KSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRS-VKYTHCELDMSFLLG 725
Query: 714 LSCGLVPFANHNHAKRVLYQSQKHSHQAIGYSTTNPRIRADTITHQLYYPQKPLFRTMLS 893
LSC LVPFANH+HA+RVLYQSQKHS QAIG+STTNP IR DT++HQL+YPQKPLFRTM S
Sbjct: 726 LSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTMAS 785
Query: 894 DCLGRPDCNI-------MPSRPEFYNGQCAIVAVNVHFGYNQEDSLVMNRASTERGMFRS 1052
DCLG+PD ++ +P + EFYNGQ AIVAVNVH GYNQEDSLVMNRAS +RGMFRS
Sbjct: 786 DCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRS 845
Query: 1053 EHIRSYKTDIYNEEAFSKPQKVEDSMKFGKIQSRVGRVDSLEEDGFPYIGASLRAGDIVI 1232
EHIRSYK++I N+E+ K +K ED + F K+QS++GRVDSL++DGFPY+GA+L++GDI+I
Sbjct: 846 EHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQSGDIII 905
Query: 1233 GKHAESGADQSLKLKHTERGTVHRVVLSANDEGKNF 1340
GK AESGAD S+KLKHTERG V +VVLS+NDEGKNF
Sbjct: 906 GKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF 941
Score = 87.0 bits (214), Expect(2) = 0.0
Identities = 42/44 (95%), Positives = 42/44 (95%)
Frame = +1
Query: 1423 VSLRQVRSPSLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPD 1554
VSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPD
Sbjct: 944 VSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPD 987