BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00009000
         (845 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     234   2e-59
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   225   8e-57
gb|ABK26380.1| unknown [Picea sitchensis]                             223   3e-56
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   221   2e-55
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   221   2e-55

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  234 bits (596), Expect = 2e-59
 Identities = 113/144 (78%), Positives = 127/144 (88%)
 Frame = +2

Query: 77  MVEYLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNTDIYPLHEGDKFMMVL 256
           MVE LF+DIF +  +DPDGKKFDKV+RIEA+SEQFDMYMQLDVNT+IYPLH GDKF MVL
Sbjct: 1   MVELLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVL 60

Query: 257 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANIKADIYVSFGGLLM 436
           A TL+LDGTPD+GY+  G RKSLADKFEYVM+GKLY+ISEE SG N+K +IY SFGGLLM
Sbjct: 61  APTLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLM 120

Query: 437 MLKGDPSIAAKFELDQRLFILMRK 508
           MLKGDPS A  FELDQRLF+LMRK
Sbjct: 121 MLKGDPSNATNFELDQRLFLLMRK 144


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  225 bits (574), Expect = 8e-57
 Identities = 108/144 (75%), Positives = 126/144 (87%)
 Frame = +2

Query: 77  MVEYLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNTDIYPLHEGDKFMMVL 256
           M   LF DIF+V+ +DPDGKKFDKV+RIEA+SEQ DMYMQLDVNT+IYP+H G+KF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 257 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANIKADIYVSFGGLLM 436
           ASTL+LDGTPDTGY+T  GRKSLADKFEYVM+GKLY+ISEEGSG N+K  IYVSFGGLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 437 MLKGDPSIAAKFELDQRLFILMRK 508
           ML GDP+  AK +LDQR+F+L+RK
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRK 144


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  223 bits (569), Expect = 3e-56
 Identities = 108/144 (75%), Positives = 122/144 (84%)
 Frame = +2

Query: 77  MVEYLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNTDIYPLHEGDKFMMVL 256
           MVE LF+DIF V  +DPDGKKFDKV+RIEA+SEQFDMYM LDVN D+YP+  G+KF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 257 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANIKADIYVSFGGLLM 436
           A TLNLDGTPD GYF  GGRKSLADK+EYVM GKLY +SEEGSGAN+K +I  SFGGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 437 MLKGDPSIAAKFELDQRLFILMRK 508
           +LKGDPS A  FELDQRLF+LMRK
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRK 144


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  221 bits (563), Expect = 2e-55
 Identities = 107/146 (73%), Positives = 127/146 (86%), Gaps = 1/146 (0%)
 Frame = +2

Query: 74  RMVEYLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNTDIYPLHEGDKFMMV 253
           +MVE+LF+DIF V  LDPDGKKFD+V+RIEA+SEQFDMYMQLDV T++YP+  GD+F MV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 254 LASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEE-GSGANIKADIYVSFGGL 430
           LA TLNLDGTPDTG++T  GRK+LADKF+YVM+GKLY+ISE+  SG   K +IY SFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 431 LMMLKGDPSIAAKFELDQRLFILMRK 508
           LMMLKGDPS AA FELDQRLF+L+RK
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRK 395


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  221 bits (563), Expect = 2e-55
 Identities = 107/146 (73%), Positives = 127/146 (86%), Gaps = 1/146 (0%)
 Frame = +2

Query: 74  RMVEYLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNTDIYPLHEGDKFMMV 253
           +MVE+LF+DIF V  LDPDGKKFD+V+RIEA+SEQFDMYMQLDV T++YP+  GD+F MV
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 254 LASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEE-GSGANIKADIYVSFGGL 430
           LA TLNLDGTPDTG++T  GRK+LADKF+YVM+GKLY+ISE+  SG   K +IY SFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 431 LMMLKGDPSIAAKFELDQRLFILMRK 508
           LMMLKGDPS AA FELDQRLF+L+RK
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRK 190