BLASTX nr result
ID: Cnidium21_contig00008969
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00008969
(540 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays] 140 1e-31
ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop... 140 1e-31
gb|ACR36437.1| unknown [Zea mays] 140 1e-31
ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays] gi|... 140 1e-31
sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, c... 140 2e-31
>tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 140 bits (353), Expect = 1e-31
Identities = 65/88 (73%), Positives = 79/88 (89%)
Frame = -1
Query: 537 NTNRLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRA 358
+ NR+YVGNLSW VDN AL LFSEQG+VL+A+++YDRESGRSRGFGFVTYGS++EV A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 357 IDNLNGADLEGRQIRVSVAEAPPPRRQY 274
I NL+GADL+GRQIRV+VAE+ PPR+QY
Sbjct: 235 ISNLDGADLDGRQIRVTVAESKPPRQQY 262
Score = 81.3 bits (199), Expect = 9e-14
Identities = 41/82 (50%), Positives = 56/82 (68%)
Frame = -1
Query: 528 RLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRAIDN 349
R++VGNL + VD+ L LF + G V +V+YD+ +GRSRGFGFVT S +EV A+D
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 348 LNGADLEGRQIRVSVAEAPPPR 283
NG L+GR +RV+ + PPPR
Sbjct: 142 FNGYVLDGRSLRVN-SGPPPPR 162
>ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 140 bits (353), Expect = 1e-31
Identities = 69/89 (77%), Positives = 78/89 (87%), Gaps = 2/89 (2%)
Frame = -1
Query: 540 DNTNRLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNR 361
D+ N+LYVGNLSW VDN LE LFSEQGKVLDAKV+YDR+SGRSRGFGFVTYGS+DEVN
Sbjct: 186 DSGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNN 245
Query: 360 AIDNLNGADLEGRQIRVSVAEAPP--PRR 280
AI NL+G DL+GRQIRV+VAE+ P PRR
Sbjct: 246 AISNLDGVDLDGRQIRVTVAESKPREPRR 274
Score = 82.4 bits (202), Expect = 4e-14
Identities = 40/85 (47%), Positives = 59/85 (69%)
Frame = -1
Query: 528 RLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRAIDN 349
+L+VGNL + VD+ L LF + G V +VVYDR +GRSRGFGFVT +++EV+ A++
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 348 LNGADLEGRQIRVSVAEAPPPRRQY 274
NG +GR +RV+ + PPPR ++
Sbjct: 145 FNGYTFQGRPLRVN-SGPPPPRDEF 168
>gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 140 bits (353), Expect = 1e-31
Identities = 65/88 (73%), Positives = 79/88 (89%)
Frame = -1
Query: 537 NTNRLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRA 358
+ NR+YVGNLSW VDN AL LFSEQG+VL+A+++YDRESGRSRGFGFVTYGS++EV A
Sbjct: 175 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 234
Query: 357 IDNLNGADLEGRQIRVSVAEAPPPRRQY 274
I NL+GADL+GRQIRV+VAE+ PPR+QY
Sbjct: 235 ISNLDGADLDGRQIRVTVAESKPPRQQY 262
Score = 81.6 bits (200), Expect = 7e-14
Identities = 43/93 (46%), Positives = 58/93 (62%)
Frame = -1
Query: 528 RLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRAIDN 349
R++VGNL + VD+ L LF + G V +V+YD+ +GRSRGFGFVT S +EV A+D
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 348 LNGADLEGRQIRVSVAEAPPPRRQY*VLNPSWP 250
NG L+GR +RV+ PPP R +P P
Sbjct: 142 FNGYVLDGRSLRVN--SGPPPPRDRSSRSPQRP 172
>ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea
mays]
Length = 264
Score = 140 bits (353), Expect = 1e-31
Identities = 65/88 (73%), Positives = 79/88 (89%)
Frame = -1
Query: 537 NTNRLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRA 358
+ NR+YVGNLSW VDN AL LFSEQG+VL+A+++YDRESGRSRGFGFVTYGS++EV A
Sbjct: 177 DANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENA 236
Query: 357 IDNLNGADLEGRQIRVSVAEAPPPRRQY 274
I NL+GADL+GRQIRV+VAE+ PPR+QY
Sbjct: 237 ISNLDGADLDGRQIRVTVAESKPPRQQY 264
Score = 81.3 bits (199), Expect = 9e-14
Identities = 41/82 (50%), Positives = 56/82 (68%)
Frame = -1
Query: 528 RLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRAIDN 349
R++VGNL + VD+ L LF + G V +V+YD+ +GRSRGFGFVT S +EV A+D
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 348 LNGADLEGRQIRVSVAEAPPPR 283
NG L+GR +RV+ + PPPR
Sbjct: 144 FNGYVLDGRSLRVN-SGPPPPR 164
>sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor gi|19708|emb|CAA46234.1|
RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 140 bits (352), Expect = 2e-31
Identities = 67/89 (75%), Positives = 79/89 (88%)
Frame = -1
Query: 540 DNTNRLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNR 361
D++NR+YVGNL+W VD ALETLFSEQGKV+DAKVVYDR+SGRSRGFGFVTY S++EVN
Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250
Query: 360 AIDNLNGADLEGRQIRVSVAEAPPPRRQY 274
AI++L+G DL GR IRVS AEA PPRRQ+
Sbjct: 251 AIESLDGVDLNGRAIRVSPAEARPPRRQF 279
Score = 80.1 bits (196), Expect = 2e-13
Identities = 43/102 (42%), Positives = 62/102 (60%)
Frame = -1
Query: 528 RLYVGNLSWDVDNVALETLFSEQGKVLDAKVVYDRESGRSRGFGFVTYGSSDEVNRAIDN 349
+++VGNL + D+ AL LF G V +V+YD+ +GRSRGFGFVT S +EV A
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 348 LNGADLEGRQIRVSVAEAPPPRRQY*VLNPSWPHLSTRKGSS 223
NG +L+GR +RV+ PPP ++ N S+ S+ +G S
Sbjct: 148 FNGYELDGRALRVN--SGPPPEKRE---NSSFRENSSFRGGS 184