BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008943
         (1276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37706.2|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, ...   382   e-103
emb|CBI28691.3| unnamed protein product [Vitis vinifera]              313   6e-83
sp|P82231.1|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, ...   309   9e-82
ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloro...   306   6e-81
gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]      302   1e-79

>sp|P37706.2|RRFC_DAUCA RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
           AltName: Full=Nuclear located protein D2; AltName:
           Full=Ribosome-releasing factor, chloroplastic; Flags:
           Precursor
          Length = 227

 Score =  382 bits (980), Expect = e-103
 Identities = 201/227 (88%), Positives = 208/227 (91%)
 Frame = +1

Query: 241 WTAAANYVKIQTGTGKFSRKTIVLSQRRMGTLKCATMEEIEAEKSLIERNVKERMEKTIE 420
           WTAAANYVKI+ GTGKF+RKT+VLSQ+R GTLKCATMEEIEAEKSLIE++VKERMEKTIE
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVVLSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEKTIE 60

Query: 421 NVKASFSSIRTGRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKAI 600
           NVKASF+SIRT RSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLK I
Sbjct: 61  NVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDI 120

Query: 601 EKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIXX 780
           EKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAI  
Sbjct: 121 EKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKS 180

Query: 781 XXXXXXXXXXXXXNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 921
                        NVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV
Sbjct: 181 YDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227


>emb|CBI28691.3| unnamed protein product [Vitis vinifera]
          Length = 274

 Score =  313 bits (802), Expect = 6e-83
 Identities = 161/246 (65%), Positives = 197/246 (80%), Gaps = 3/246 (1%)
 Frame = +1

Query: 193 GPNCVKCNLTSGCVKSWTAAANYVKIQTGTGKFSRKTIVLS---QRRMGTLKCATMEEIE 363
           GP   KC+L  G   +  +AANYV++  G  ++S K  V     Q+R G  +CAT+EEIE
Sbjct: 29  GPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGKLFVAKRNFQKRTGIFRCATIEEIE 88

Query: 364 AEKSLIERNVKERMEKTIENVKASFSSIRTGRSNPDMLDKIKVEYYGTPTSLKSIAQIST 543
           AEKS IE++VKERMEKTIE V+ +F+SIRTGR+NP +LD+++VEYYGTP SLKSIAQIST
Sbjct: 89  AEKSSIEKDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQIST 148

Query: 544 PDSSSLLVNPYDKSSLKAIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAK 723
           PDS+SLLV PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRLS+PQLT++RRKELSK+VAK
Sbjct: 149 PDSASLLVQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAK 208

Query: 724 QAEEGKVALRNIRRDAIXXXXXXXXXXXXXXXNVKDLSSDLQKVIDEYIKKVDSIFKQKE 903
           Q EEGKVALRNIRRDA+               NVKDLSSDLQK+IDEY+KK+++I+KQKE
Sbjct: 209 QTEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKE 268

Query: 904 KELMTV 921
           KEL+ V
Sbjct: 269 KELLKV 274


>sp|P82231.1|RRFC_SPIOL RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF;
           AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName:
           Full=Ribosome-releasing factor, chloroplastic; Flags:
           Precursor gi|4689034|emb|CAB41419.1| chloroplast
           ribosome recycling factor protein [Spinacia oleracea]
          Length = 271

 Score =  309 bits (792), Expect = 9e-82
 Identities = 155/245 (63%), Positives = 197/245 (80%), Gaps = 2/245 (0%)
 Frame = +1

Query: 193 GPNCVKCNLTSGCVKSWTAAANYVKIQTGTGKFSRKTIVLSQ--RRMGTLKCATMEEIEA 366
           G + ++CN+    V  W ++ANYV++  G  KFS K +V+ Q   R GT +CATMEE+EA
Sbjct: 27  GVSDMECNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQNRAGTFRCATMEEVEA 86

Query: 367 EKSLIERNVKERMEKTIENVKASFSSIRTGRSNPDMLDKIKVEYYGTPTSLKSIAQISTP 546
           EKSLIE N K+RMEKTIE ++++F+S+RT R++P MLD+I+VEYYGTP SLKSIAQISTP
Sbjct: 87  EKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTP 146

Query: 547 DSSSLLVNPYDKSSLKAIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQ 726
           D+SSLL++PYDKSSLKAIEKAIV S LG++PNNDG+VIRLS+P LT+DRRKEL+K+V+K 
Sbjct: 147 DASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKL 206

Query: 727 AEEGKVALRNIRRDAIXXXXXXXXXXXXXXXNVKDLSSDLQKVIDEYIKKVDSIFKQKEK 906
           AEEGKVA+RNIRRDA+               NVKDLS+DLQK+ DEY+KKV+SI+KQKE+
Sbjct: 207 AEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQ 266

Query: 907 ELMTV 921
           ELM V
Sbjct: 267 ELMKV 271


>ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis
           vinifera]
          Length = 280

 Score =  306 bits (785), Expect = 6e-81
 Identities = 159/254 (62%), Positives = 196/254 (77%), Gaps = 11/254 (4%)
 Frame = +1

Query: 193 GPNCVKCNLTSGCVKSWTAAANYVKIQTGTGKFSRKTIVLSQR-----------RMGTLK 339
           GP   KC+L  G   +  +AANYV++  G  ++S K  V  +            + G  +
Sbjct: 27  GPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGKLFVAKRNFQKRQVESYGYKTGIFR 86

Query: 340 CATMEEIEAEKSLIERNVKERMEKTIENVKASFSSIRTGRSNPDMLDKIKVEYYGTPTSL 519
           CAT+EEIEAEKS IE++VKERMEKTIE V+ +F+SIRTGR+NP +LD+++VEYYGTP SL
Sbjct: 87  CATIEEIEAEKSSIEKDVKERMEKTIETVRTNFNSIRTGRANPAILDRVEVEYYGTPVSL 146

Query: 520 KSIAQISTPDSSSLLVNPYDKSSLKAIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRK 699
           KSIAQISTPDS+SLLV PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRLS+PQLT++RRK
Sbjct: 147 KSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSSDLGLTPNNDGEVIRLSLPQLTSERRK 206

Query: 700 ELSKIVAKQAEEGKVALRNIRRDAIXXXXXXXXXXXXXXXNVKDLSSDLQKVIDEYIKKV 879
           ELSK+VAKQ EEGKVALRNIRRDA+               NVKDLSSDLQK+IDEY+KK+
Sbjct: 207 ELSKVVAKQTEEGKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLIDEYMKKI 266

Query: 880 DSIFKQKEKELMTV 921
           ++I+KQKEKEL+ V
Sbjct: 267 ETIYKQKEKELLKV 280


>gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 286

 Score =  302 bits (773), Expect = 1e-79
 Identities = 160/249 (64%), Positives = 194/249 (77%), Gaps = 6/249 (2%)
 Frame = +1

Query: 193 GPNCVKCNLTS---GCVKSWTAAANYVKIQTGTGKFSRKTIV---LSQRRMGTLKCATME 354
           GP+  K    S     V  W+++ANY  ++ G+ K S K +    L Q R G ++ AT+E
Sbjct: 38  GPHRAKVGYNSIGAASVSLWSSSANYSSLRNGSSKLSGKPVAVKRLLQNRRGVVRNATIE 97

Query: 355 EIEAEKSLIERNVKERMEKTIENVKASFSSIRTGRSNPDMLDKIKVEYYGTPTSLKSIAQ 534
           EIEAEKSLIE + K RMEKTI+ ++ +F+S+RTGR+NP MLDKI+VEYYGTP SLKSIAQ
Sbjct: 98  EIEAEKSLIEDDAKGRMEKTIDTMRTNFNSVRTGRANPSMLDKIEVEYYGTPVSLKSIAQ 157

Query: 535 ISTPDSSSLLVNPYDKSSLKAIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKI 714
           ISTPD+SSLLV PYDKSSLKAIEKAIV+SDLG+TPNNDG+VIR+SIPQLT++RRKELSK+
Sbjct: 158 ISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPNNDGEVIRMSIPQLTSERRKELSKM 217

Query: 715 VAKQAEEGKVALRNIRRDAIXXXXXXXXXXXXXXXNVKDLSSDLQKVIDEYIKKVDSIFK 894
           VAK AEEGKVALRNIRRDA+               NVKDLSSDLQK+ DEY+KK+D+IFK
Sbjct: 218 VAKLAEEGKVALRNIRRDALKAYEKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKLDNIFK 277

Query: 895 QKEKELMTV 921
           QKEKEL+ V
Sbjct: 278 QKEKELLKV 286