BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008904
         (888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   348   1e-93
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik...   347   3e-93
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   344   2e-92
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      340   2e-91
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   338   1e-90

>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  348 bits (893), Expect = 1e-93
 Identities = 171/240 (71%), Positives = 197/240 (82%)
 Frame = +1

Query: 88  SLNRPAKVAKVIGXXXXXXXXXXXXQNMNRKTGIQRYLLAVEYIGTRFCGAQQQPTDRTV 267
           S  RP K+ K               + MN K GIQRYL+AVEYIGTRF G+QQQP  RTV
Sbjct: 16  SSQRPLKIGKTTDELFHGDEEEA--ETMNPKPGIQRYLVAVEYIGTRFYGSQQQPNCRTV 73

Query: 268 VGVLQEAFRKFIGQSVSVTCSSRTDAGVHALSNVFHVDVERISKRKPGELLPPHEPGVVI 447
           VG L+EAF+KFIGQ VSV CSSRTDAGVHALSNV HVDVERISKRKPGE+LPPHEPGVV 
Sbjct: 74  VGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVH 133

Query: 448 KAVNHFLQKNEGDITLLDVRCVSSDFHARYRAQERTYFYRLLSGPQCVSTFEKDRAWHVP 627
           KAVNHFLQK+EGD+T++DVR V +DFHARY+AQERTYFYRL+SGP+ +S+FEKDRAWHVP
Sbjct: 134 KAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVP 193

Query: 628 EALDLSAMQKACTILVGHHDFSSFRSAACQAKSPIRSLDELSVTEFVSAPYFPSVMEREQ 807
           E L++ AMQ+AC +LVGHHDFSSFR+A CQA SPIR+LDEL+V E  S PYFP+ MER+Q
Sbjct: 194 ETLNIGAMQEACKVLVGHHDFSSFRAAGCQANSPIRTLDELNVCEVASTPYFPTSMERKQ 253


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 369

 Score =  347 bits (889), Expect = 3e-93
 Identities = 170/264 (64%), Positives = 209/264 (79%)
 Frame = +1

Query: 94  NRPAKVAKVIGXXXXXXXXXXXXQNMNRKTGIQRYLLAVEYIGTRFCGAQQQPTDRTVVG 273
           +RP+K++K+               + N + GIQRYL+A+EYIGT F G+Q+Q   RTVVG
Sbjct: 17  SRPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVG 76

Query: 274 VLQEAFRKFIGQSVSVTCSSRTDAGVHALSNVFHVDVERISKRKPGELLPPHEPGVVIKA 453
            L+EAF KF+GQ VSV+CSSRTDAGVHALSNV HVD++RISKR+PGE+LPPHEP VV +A
Sbjct: 77  ALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRA 136

Query: 454 VNHFLQKNEGDITLLDVRCVSSDFHARYRAQERTYFYRLLSGPQCVSTFEKDRAWHVPEA 633
           VNHFLQK++ D+ ++DVRCV SDFHAR++AQERTYFYRLLSGP+ +STFEKDRAWHVPE 
Sbjct: 137 VNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEE 196

Query: 634 LDLSAMQKACTILVGHHDFSSFRSAACQAKSPIRSLDELSVTEFVSAPYFPSVMEREQHN 813
           L L AMQ+AC +LVG HDFSSFR+A CQAKSPIR+LDELSV E + +PYFPS+M+REQHN
Sbjct: 197 LSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHN 256

Query: 814 LVSSFVCSESKTSIACIPSAPVQN 885
            VS  + S S  +   IP  P+ N
Sbjct: 257 KVSGDLRSCSNNTETDIP--PISN 278


>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
           gi|297739525|emb|CBI29707.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score =  344 bits (882), Expect = 2e-92
 Identities = 173/266 (65%), Positives = 203/266 (76%), Gaps = 2/266 (0%)
 Frame = +1

Query: 85  ESLNRPAKVAKVIGXXXXXXXXXXXXQNMNRKTGIQRYLLAVEYIGTRFCGAQQQPTDRT 264
           ES  RP+K+A+               + M +   +QRYL+AVEYIGTRF G+QQQ   RT
Sbjct: 27  ESPQRPSKIARTDDLSDGEQQDSVASKTMTQNPRVQRYLVAVEYIGTRFSGSQQQLNCRT 86

Query: 265 VVGVLQEAFRKFIGQSVSVTCSSRTDAGVHALSNVFHVDVERISKRKPGELLPPHEPGVV 444
           V G LQEAF KFIGQ VS+ CSSRTDAGVHALSNV HVDVERISKRKPGE+LPPHEP VV
Sbjct: 87  VAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVV 146

Query: 445 IKAVNHFLQKNEGDITLLDVRCVSSDFHARYRAQERTYFYRLLSGPQCVSTFEKDRAWHV 624
            +AVNHFLQKNEGD+ ++DVRCV  DFHARY+A+ERTYFYRLLSGP+ +S+FEKDRAWHV
Sbjct: 147 RRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARERTYFYRLLSGPEPLSSFEKDRAWHV 206

Query: 625 PEALDLSAMQKACTILVGHHDFSSFRSAACQAKSPIRSLDELSVTEFVSAPYFPSVMERE 804
           PE LDL AMQKAC +LVG HDFSSFR+A CQAKSPIR+LDEL V+E +  PYFPS+ ER 
Sbjct: 207 PEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTPYFPSITERA 266

Query: 805 QHNLV--SSFVCSESKTSIACIPSAP 876
           Q+N    +   CS +    A +P +P
Sbjct: 267 QNNFTEENPLACSNN----AEVPDSP 288


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  340 bits (873), Expect = 2e-91
 Identities = 175/265 (66%), Positives = 206/265 (77%), Gaps = 3/265 (1%)
 Frame = +1

Query: 94  NRPAKVAKVIGXXXXXXXXXXXXQNMNRKTGIQRYLLAVEYIGTRFCGAQQQPTDRTVVG 273
           NRP+K++K+               + +RK  IQRYL+AVEYIGTRF G Q+Q TDRTV G
Sbjct: 20  NRPSKISKI--------EEEMNQHHHHRK--IQRYLVAVEYIGTRFFGFQKQLTDRTVAG 69

Query: 274 VLQEAFRKFIGQSVSVTCSSRTDAGVHALSNVFHVDVERISKRKPGELLPPHEPGVVIKA 453
           VL++AF KF+GQ VSV CSSRTDAGVHALSNV HVD+ERISKRKPGE+L PHEP VV +A
Sbjct: 70  VLEDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEVLQPHEPAVVRRA 129

Query: 454 VNHFLQKNEGDITLLDVRCVSSDFHARYRAQERTYFYRLLSGPQCVSTFEKDRAWHVPEA 633
           VNHFLQK  GD+ ++DVRCV SDFHARY+AQERTYFYRLLSGP+ +STFEKDRAWH+PE 
Sbjct: 130 VNHFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLSTFEKDRAWHIPEE 189

Query: 634 LDLSAMQKACTILVGHHDFSSFRSAACQAKSPIRSLDELSVTEFVSAPYFPSVMEREQH- 810
           L+L AMQ+AC +LVGHHDFSSFR++ CQAKSPIRSLDELSV E   +PYFPSVM+RE   
Sbjct: 190 LNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIRSLDELSVVEVTRSPYFPSVMDRENPI 249

Query: 811 NLVSSFVC--SESKTSIACIPSAPV 879
           N+     C  S S+T I    SA +
Sbjct: 250 NVTDDLHCFHSNSETVIPLGSSARI 274


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
           gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  338 bits (867), Expect = 1e-90
 Identities = 168/260 (64%), Positives = 204/260 (78%)
 Frame = +1

Query: 88  SLNRPAKVAKVIGXXXXXXXXXXXXQNMNRKTGIQRYLLAVEYIGTRFCGAQQQPTDRTV 267
           ++NRP+K++ +I                N + GIQRYL+A+EYIGTRF G+Q+Q   RTV
Sbjct: 17  NINRPSKIS-IIEYPIDSDIDEEEEMIKNPRNGIQRYLVAIEYIGTRFSGSQKQLNVRTV 75

Query: 268 VGVLQEAFRKFIGQSVSVTCSSRTDAGVHALSNVFHVDVERISKRKPGELLPPHEPGVVI 447
           VGVL+EAF KF+GQ VSV+CSSRT AGVHALSNV HVD++RISKR+PGE+L PHEP VV 
Sbjct: 76  VGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNVCHVDIQRISKRRPGEVLTPHEPAVVG 135

Query: 448 KAVNHFLQKNEGDITLLDVRCVSSDFHARYRAQERTYFYRLLSGPQCVSTFEKDRAWHVP 627
           +AVNHFLQK + D+ ++DVRCV SDFHAR++AQER YFYRLLSGP+ +STFEKDRAWHVP
Sbjct: 136 RAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQERIYFYRLLSGPEPLSTFEKDRAWHVP 195

Query: 628 EALDLSAMQKACTILVGHHDFSSFRSAACQAKSPIRSLDELSVTEFVSAPYFPSVMEREQ 807
           E L L AMQ+AC +LVG HDFSSFR+A CQAKSPIR+LDELSV E + +PYFPS+M+REQ
Sbjct: 196 EELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQ 255

Query: 808 HNLVSSFVCSESKTSIACIP 867
           HN VS  + S    S   IP
Sbjct: 256 HNKVSGDLRSCPNNSETDIP 275