BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008749
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...    71   2e-10

>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 39/115 (33%), Positives = 63/115 (54%)
 Frame = -3

Query: 350 MGPPTVA*RIDQLEEKATHIEDTMADMVTKGVEPAMEATRHSLTELIMESQSAAAKKMGA 171
           M PPT   R+D LE +  ++++++A  ++  V  AMEA + ++ + I +    A KK   
Sbjct: 1   MAPPTTNQRLDLLEAQMANLQNSIAAQISDSVGLAMEAAKITIADQISQRMEEAMKKSKE 60

Query: 170 EFDAMSGRMEGRINRGREYQE*MINTMRNEHIKFQMEMKSTLTELQSTQLPGNNK 6
           + D  + R+EGRI R RE  E M+   R +  KFQ E+ S L +LQ  +    N+
Sbjct: 61  DLDVANFRLEGRIERTRENLEGMLTVARADQNKFQTEVSSALAKLQPEKEKNGNR 115