BLASTX nr result

ID: Cnidium21_contig00008734 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008734
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518649.1| PREDICTED: transcription initiation factor T...   119   3e-25
ref|XP_002264290.1| PREDICTED: transcription initiation factor T...   111   5e-23
ref|XP_003551827.1| PREDICTED: uncharacterized protein LOC100803...   109   2e-22
ref|XP_004168580.1| PREDICTED: transcription initiation factor T...   107   1e-21
ref|XP_004144526.1| PREDICTED: transcription initiation factor T...   107   1e-21

>ref|XP_003518649.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
           [Glycine max]
          Length = 544

 Score =  119 bits (297), Expect = 3e-25
 Identities = 63/98 (64%), Positives = 71/98 (72%)
 Frame = -3

Query: 338 EKQKNELKRHEAWRVYGALLRAAGQSIYDKLKMFPPLASPPAHVVLTPNAKVITSNSTNK 159
           EKQKNELKRHEAWRVYGALLRAAGQ IYD+LK+FP   SPP H V   N+KV+TS ST K
Sbjct: 363 EKQKNELKRHEAWRVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNSKVLTS-STYK 421

Query: 158 RKANTDDMEQQSPSKKAAIDGAIVPVSNNSLPPDIEEE 45
           RKA+ D +EQQ P KKAA DG +     N  P   +EE
Sbjct: 422 RKASPDQLEQQPPLKKAATDGEVGVDLMNFSPVHKQEE 459


>ref|XP_002264290.1| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis
           vinifera] gi|297739126|emb|CBI28777.3| unnamed protein
           product [Vitis vinifera]
          Length = 543

 Score =  111 bits (278), Expect = 5e-23
 Identities = 63/98 (64%), Positives = 72/98 (73%), Gaps = 4/98 (4%)
 Frame = -3

Query: 338 EKQKNELKRHEAWRVYGALLRAAGQSIYDKLKMFPPLASPPAHVVLTPNAKVITSNSTNK 159
           EKQKNELKRHEAW VYGALLRA GQSIYD+LKMFP L SPPA V  T N +V+TS   NK
Sbjct: 363 EKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPARVFRT-NGRVVTS-PPNK 420

Query: 158 RKANTDDMEQQSPSKKAAIDGA--IVP--VSNNSLPPD 57
           RKAN + +EQQ   KK A DG   +VP  +S+N  PP+
Sbjct: 421 RKANNEHLEQQPSLKKIATDGPMDVVPTNLSSNMQPPE 458


>ref|XP_003551827.1| PREDICTED: uncharacterized protein LOC100803416 [Glycine max]
          Length = 440

 Score =  109 bits (273), Expect = 2e-22
 Identities = 55/83 (66%), Positives = 64/83 (77%)
 Frame = -3

Query: 338 EKQKNELKRHEAWRVYGALLRAAGQSIYDKLKMFPPLASPPAHVVLTPNAKVITSNSTNK 159
           E QKNE+KRHEAW VYGALLRAAGQ IYD+LK+FP   SPP H V   NAKV+TS + +K
Sbjct: 263 EMQKNEMKRHEAWLVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNAKVLTS-TLDK 321

Query: 158 RKANTDDMEQQSPSKKAAIDGAI 90
           RKA+ + +EQQ P KKAA DG I
Sbjct: 322 RKASPEQLEQQPPLKKAATDGEI 344


>ref|XP_004168580.1| PREDICTED: transcription initiation factor TFIID subunit 6-like,
           partial [Cucumis sativus]
          Length = 439

 Score =  107 bits (266), Expect = 1e-21
 Identities = 53/94 (56%), Positives = 66/94 (70%)
 Frame = -3

Query: 332 QKNELKRHEAWRVYGALLRAAGQSIYDKLKMFPPLASPPAHVVLTPNAKVITSNSTNKRK 153
           QKNE+KRHEAW VYGALLRA GQ IY+++K+FPPL S PA  VL  NA+ IT+   NKRK
Sbjct: 259 QKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTITTTFPNKRK 318

Query: 152 ANTDDMEQQSPSKKAAIDGAIVPVSNNSLPPDIE 51
           AN D +E Q P K+ +IDG +  +  NS    +E
Sbjct: 319 ANADYLEGQPPLKRMSIDGPMGVMLTNSSASHME 352


>ref|XP_004144526.1| PREDICTED: transcription initiation factor TFIID subunit 6-like
           [Cucumis sativus]
          Length = 544

 Score =  107 bits (266), Expect = 1e-21
 Identities = 53/94 (56%), Positives = 66/94 (70%)
 Frame = -3

Query: 332 QKNELKRHEAWRVYGALLRAAGQSIYDKLKMFPPLASPPAHVVLTPNAKVITSNSTNKRK 153
           QKNE+KRHEAW VYGALLRA GQ IY+++K+FPPL S PA  VL  NA+ IT+   NKRK
Sbjct: 364 QKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTITTTFPNKRK 423

Query: 152 ANTDDMEQQSPSKKAAIDGAIVPVSNNSLPPDIE 51
           AN D +E Q P K+ +IDG +  +  NS    +E
Sbjct: 424 ANADYLEGQPPLKRMSIDGPMGVMLTNSSASHME 457


Top