BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008712
         (1111 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]     233   5e-59
gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antir...   227   4e-57
ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, puta...   226   8e-57
pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Syn...   221   3e-55
ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|2...   214   4e-53

>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
          Length = 306

 Score =  233 bits (595), Expect = 5e-59
 Identities = 134/306 (43%), Positives = 183/306 (59%), Gaps = 5/306 (1%)
 Frame = -3

Query: 1097 MAAKAISHLHGKLSSNVYSPPILNPSRSFY--RPIVAATTTTEQQHKSYWAAIQTQIDTH 924
            MA    S +HG L +   S    NP    +  RP+V A +T +    SYW+++   +DTH
Sbjct: 1    MAGALSSTIHGNLIARAVSSS--NPKHPLFSHRPMVVAMSTDQ----SYWSSVNADLDTH 54

Query: 923  LKKSIPIRFPTSVFEPMHHLTFSASTSTAPPLCIAACELVGGSADDAVTXXXXXXXXXXX 744
            LK++IPIR P +VFEPM HL  SA  ++AP LCIAACELVGG  + A+            
Sbjct: 55   LKQAIPIRQPLAVFEPMRHLILSAPQTSAPALCIAACELVGGHRNQAMAAASALRLVHAS 114

Query: 743  AFTHQHLPLTDGPMHLGSTVEHMFKPNIELLTPDGMVPFGFELLGLSKQ-AQNNSDRILR 567
            A TH++LPLTD P  +  T   ++ PNIELL  DG++P+GFELL      A+NNS+R+LR
Sbjct: 115  ASTHENLPLTDRPRPMPRTRPTLYGPNIELLIADGIIPYGFELLARDDDAAENNSNRVLR 174

Query: 566  VIIEISRAIGSQGIVDGMYQEIVYGESKGED--DEKMVEYVCEKKEGELHXXXXXXXXXX 393
             IIEISRA+GSQG+++G Y E  Y ES+GE+      ++ VC KKEG LH          
Sbjct: 175  AIIEISRAMGSQGVIEGQYNESQYEESEGEEIFHVGWLQNVCRKKEGTLHACAGACGAIL 234

Query: 392  XXGSEEEIEKLRKYGLYVGMIQGMVNGIGKNKQGRFEIVXXXXXXXXXXXXLFDGKNVEE 213
              GSE+EIEKLR+YGLYVGM+QG+++ + + K+   + V             F+   V+ 
Sbjct: 235  GGGSEDEIEKLRRYGLYVGMVQGILSKVDERKEWPVKEVNKLRDLALKELKDFNQAKVKT 294

Query: 212  ISTLLE 195
            IS L+E
Sbjct: 295  ISILVE 300


>gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
          Length = 297

 Score =  227 bits (579), Expect = 4e-57
 Identities = 124/277 (44%), Positives = 173/277 (62%), Gaps = 1/277 (0%)
 Frame = -3

Query: 1022 SRSFYRPIVAATTTTEQQHKSYWAAIQTQIDTHLKKSIPIRFPTSVFEPMHHLTFSASTS 843
            +R   RP++ A T T+    +Y A I++ I+++LKK+IPIR P SVFEPMHHLTF+A  +
Sbjct: 24   TRPSTRPVILAMTRTQ----TYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRT 79

Query: 842  TAPPLCIAACELVGGSADDAVTXXXXXXXXXXXAFTHQHLPLTDGPMHLGSTVEHMFKPN 663
            +A  LC+AACELVGG   DA+            A+TH++LPLTDGPM   S ++H F PN
Sbjct: 80   SASALCVAACELVGGDRSDAMAAAAAVHLMHVAAYTHENLPLTDGPMS-KSEIQHKFDPN 138

Query: 662  IELLTPDGMVPFGFELLGLSKQ-AQNNSDRILRVIIEISRAIGSQGIVDGMYQEIVYGES 486
            IELLT DG++PFG EL+  S    +NN DRILR IIE++R +GS+GIV+G Y E+   + 
Sbjct: 139  IELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQL 198

Query: 485  KGEDDEKMVEYVCEKKEGELHXXXXXXXXXXXXGSEEEIEKLRKYGLYVGMIQGMVNGIG 306
               +D +++EYVC+KKEG LH              E++IEKLR++GLYVG +QG+   +G
Sbjct: 199  ---NDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGL---LG 252

Query: 305  KNKQGRFEIVXXXXXXXXXXXXLFDGKNVEEISTLLE 195
            KN+ G    +             F G+ +E I  + E
Sbjct: 253  KNRSGFEGRIKELKELAVKELESFGGEKIELIRGVFE 289


>ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
            gi|223527725|gb|EEF29831.1| geranyl geranyl pyrophosphate
            synthase, putative [Ricinus communis]
          Length = 308

 Score =  226 bits (576), Expect = 8e-57
 Identities = 124/242 (51%), Positives = 156/242 (64%), Gaps = 4/242 (1%)
 Frame = -3

Query: 1007 RPIVAATTTTEQQHKSYWAAIQTQIDTHLKKSIPIRFPTSVFEPMHHLTFSASTSTAPPL 828
            RP+    + + +    YW  I   I+THLK++IP+R P  VFEPMHHLTF+A  S AP L
Sbjct: 34   RPVACVMSNSSKI--DYWTCINADIETHLKEAIPVRPPVVVFEPMHHLTFAAPRSFAPAL 91

Query: 827  CIAACELVGGSADDAVTXXXXXXXXXXXAFTHQHLPLTDGPMHLGSTV-EHMFKPNIELL 651
            CIAACELVGGS D A+            AFTH+++PLTD P      +  H F PNIELL
Sbjct: 92   CIAACELVGGSRDQALAAASALRLMIAAAFTHENIPLTDRPRPSARPMFHHTFGPNIELL 151

Query: 650  TPDGMVPFGFELLG-LSKQAQNNSDRILRVIIEISRAIGSQGIVDGMYQEIVYGESKGED 474
            T DGM+PF FELL  L+  AQ+NSDRILRV+IEISRA+GSQG+V+G Y E  Y +S G++
Sbjct: 152  TGDGMIPFAFELLAQLNNPAQDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYDQSVGDE 211

Query: 473  --DEKMVEYVCEKKEGELHXXXXXXXXXXXXGSEEEIEKLRKYGLYVGMIQGMVNGIGKN 300
                  +  VC+KKEG  H            G+EEEIEKLR+YGLYVG IQG+ N +  N
Sbjct: 212  LFHVAWLRDVCKKKEGASHACAGACGAILGGGNEEEIEKLRRYGLYVGTIQGIYNKVEGN 271

Query: 299  KQ 294
            ++
Sbjct: 272  EE 273


>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
           Subunit From Antirrhinum Majus gi|323463188|pdb|3QKC|A
           Chain A, Crystal Structure Of Geranyl Diphosphate
           Synthase Small Subunit From Antirrhinum Majus
          Length = 273

 Score =  221 bits (563), Expect = 3e-55
 Identities = 118/258 (45%), Positives = 164/258 (63%), Gaps = 1/258 (0%)
 Frame = -3

Query: 965 KSYWAAIQTQIDTHLKKSIPIRFPTSVFEPMHHLTFSASTSTAPPLCIAACELVGGSADD 786
           ++Y A I++ I+++LKK+IPIR P SVFEPMHHLTF+A  ++A  LC+AACELVGG   D
Sbjct: 7   QTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSD 66

Query: 785 AVTXXXXXXXXXXXAFTHQHLPLTDGPMHLGSTVEHMFKPNIELLTPDGMVPFGFELLGL 606
           A+            A+TH++LPLTDGPM   S ++H F PNIELLT DG++PFG EL+  
Sbjct: 67  AMAAAAAVHLMHVAAYTHENLPLTDGPMS-KSEIQHKFDPNIELLTGDGIIPFGLELMAR 125

Query: 605 SKQ-AQNNSDRILRVIIEISRAIGSQGIVDGMYQEIVYGESKGEDDEKMVEYVCEKKEGE 429
           S    +NN DRILR IIE++R +GS+GIV+G Y E+   +    +D +++EYVC+KKEG 
Sbjct: 126 SMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQL---NDLELIEYVCKKKEGT 182

Query: 428 LHXXXXXXXXXXXXGSEEEIEKLRKYGLYVGMIQGMVNGIGKNKQGRFEIVXXXXXXXXX 249
           LH              E++IEKLR++GLYVG +QG+   +GKN+ G    +         
Sbjct: 183 LHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGL---LGKNRSGFEGRIKELKELAVK 239

Query: 248 XXXLFDGKNVEEISTLLE 195
               F G+ +E I  + E
Sbjct: 240 ELESFGGEKIELIRGVFE 257


>ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|222869068|gb|EEF06199.1|
           predicted protein [Populus trichocarpa]
          Length = 236

 Score =  214 bits (544), Expect = 4e-53
 Identities = 115/224 (51%), Positives = 148/224 (66%), Gaps = 1/224 (0%)
 Frame = -3

Query: 962 SYWAAIQTQIDTHLKKSIPIRFPTSVFEPMHHLTFSASTSTAPPLCIAACELVGGSADDA 783
           SYW ++  +ID HLK++IPIR P SVFEPMHHLTF+A  +TAP LCIAACELVGG+ D A
Sbjct: 1   SYWTSVNDEIDAHLKQAIPIRPPLSVFEPMHHLTFAAPRTTAPALCIAACELVGGNRDQA 60

Query: 782 VTXXXXXXXXXXXAFTHQHLPLTDGPMHLGSTVEHMFKPNIELLTPDGMVPFGFELLGLS 603
           +            A TH+H+  T     +G    H F  NIELLT DGMVPFG ELL  S
Sbjct: 61  MAAASALRLMHAAALTHEHILSTGNRARIG----HSFGSNIELLTGDGMVPFGLELLAKS 116

Query: 602 KQ-AQNNSDRILRVIIEISRAIGSQGIVDGMYQEIVYGESKGEDDEKMVEYVCEKKEGEL 426
               QNNS+RILRVIIEI++A+GSQG+  G Y +  +G+S        +++VC+KKEGEL
Sbjct: 117 DDLTQNNSERILRVIIEITQAMGSQGMALGQYNQFQHGQS------DYIDHVCKKKEGEL 170

Query: 425 HXXXXXXXXXXXXGSEEEIEKLRKYGLYVGMIQGMVNGIGKNKQ 294
           H            G+EEEIEKLR+YGLYVG++QG+++   + K+
Sbjct: 171 HSCAGAVGAILGGGTEEEIEKLRRYGLYVGLMQGVLSNWVERKE 214