BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008711
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]     135   8e-30
ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, puta...   124   1e-26
pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Syn...   120   1e-25
gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antir...   120   1e-25
ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|2...   116   4e-24

>dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
          Length = 306

 Score =  135 bits (339), Expect = 8e-30
 Identities = 74/161 (45%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
 Frame = +1

Query: 4   PNIELLIPDGMVPFGFELLGLSEQA-RNKSDRILRVIIEISRAVGSQGIVDGMYQEIVYG 180
           PNIELLI DG++P+GFELL   + A  N S+R+LR IIEISRA+GSQG+++G Y E  Y 
Sbjct: 140 PNIELLIADGIIPYGFELLARDDDAAENNSNRVLRAIIEISRAMGSQGVIEGQYNESQYE 199

Query: 181 ESKGEDDEKM--VEYVCEKKEGELHXXXXXXXXXXXXXSEEEIEKLRKYGLYVGMIQGMV 354
           ES+GE+   +  ++ VC KKEG LH             SE+EIEKLR+YGLYVGM+QG++
Sbjct: 200 ESEGEEIFHVGWLQNVCRKKEGTLHACAGACGAILGGGSEDEIEKLRRYGLYVGMVQGIL 259

Query: 355 NGIGKNKQGRFEIVXXXXXXXXXXXXXFNGKNVEEISTLLE 477
           + + + K+   + V             FN   V+ IS L+E
Sbjct: 260 SKVDERKEWPVKEVNKLRDLALKELKDFNQAKVKTISILVE 300


>ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
           gi|223527725|gb|EEF29831.1| geranyl geranyl
           pyrophosphate synthase, putative [Ricinus communis]
          Length = 308

 Score =  124 bits (311), Expect = 1e-26
 Identities = 74/162 (45%), Positives = 97/162 (59%), Gaps = 4/162 (2%)
 Frame = +1

Query: 4   PNIELLIPDGMVPFGFELLG-LSEQARNKSDRILRVIIEISRAVGSQGIVDGMYQEIVYG 180
           PNIELL  DGM+PF FELL  L+  A++ SDRILRV+IEISRA+GSQG+V+G Y E  Y 
Sbjct: 146 PNIELLTGDGMIPFAFELLAQLNNPAQDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYD 205

Query: 181 ESKGED--DEKMVEYVCEKKEGELHXXXXXXXXXXXXXSEEEIEKLRKYGLYVGMIQGMV 354
           +S G++      +  VC+KKEG  H             +EEEIEKLR+YGLYVG IQG+ 
Sbjct: 206 QSVGDELFHVAWLRDVCKKKEGASHACAGACGAILGGGNEEEIEKLRRYGLYVGTIQGIY 265

Query: 355 NGIGKNKQGRFEIVXXXXXXXXXXXXXFN-GKNVEEISTLLE 477
           N +  N++   + V             FN  + V  I +L+E
Sbjct: 266 NKVEGNEEWSLKEVNKLRDLALKELKDFNEEEKVRAICSLVE 307


>pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
           Subunit From Antirrhinum Majus gi|323463188|pdb|3QKC|A
           Chain A, Crystal Structure Of Geranyl Diphosphate
           Synthase Small Subunit From Antirrhinum Majus
          Length = 273

 Score =  120 bits (302), Expect = 1e-25
 Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
 Frame = +1

Query: 4   PNIELLIPDGMVPFGFELLGLS-EQARNKSDRILRVIIEISRAVGSQGIVDGMYQEIVYG 180
           PNIELL  DG++PFG EL+  S +  RN  DRILR IIE++R +GS+GIV+G Y E+   
Sbjct: 105 PNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLN 164

Query: 181 ESKGEDDEKMVEYVCEKKEGELHXXXXXXXXXXXXXSEEEIEKLRKYGLYVGMIQGMVNG 360
           +    +D +++EYVC+KKEG LH              E++IEKLR++GLYVG +QG+   
Sbjct: 165 QL---NDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGL--- 218

Query: 361 IGKNKQGRFEIVXXXXXXXXXXXXXFNGKNVEEISTLLEM 480
           +GKN+ G    +             F G+ +E I  + E+
Sbjct: 219 LGKNRSGFEGRIKELKELAVKELESFGGEKIELIRGVFEL 258


>gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
          Length = 297

 Score =  120 bits (302), Expect = 1e-25
 Identities = 66/160 (41%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
 Frame = +1

Query: 4   PNIELLIPDGMVPFGFELLGLS-EQARNKSDRILRVIIEISRAVGSQGIVDGMYQEIVYG 180
           PNIELL  DG++PFG EL+  S +  RN  DRILR IIE++R +GS+GIV+G Y E+   
Sbjct: 137 PNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLN 196

Query: 181 ESKGEDDEKMVEYVCEKKEGELHXXXXXXXXXXXXXSEEEIEKLRKYGLYVGMIQGMVNG 360
           +    +D +++EYVC+KKEG LH              E++IEKLR++GLYVG +QG+   
Sbjct: 197 QL---NDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGL--- 250

Query: 361 IGKNKQGRFEIVXXXXXXXXXXXXXFNGKNVEEISTLLEM 480
           +GKN+ G    +             F G+ +E I  + E+
Sbjct: 251 LGKNRSGFEGRIKELKELAVKELESFGGEKIELIRGVFEL 290


>ref|XP_002322072.1| predicted protein [Populus trichocarpa] gi|222869068|gb|EEF06199.1|
           predicted protein [Populus trichocarpa]
          Length = 236

 Score =  116 bits (290), Expect = 4e-24
 Identities = 62/125 (49%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
 Frame = +1

Query: 7   NIELLIPDGMVPFGFELLGLSEQ-ARNKSDRILRVIIEISRAVGSQGIVDGMYQEIVYGE 183
           NIELL  DGMVPFG ELL  S+   +N S+RILRVIIEI++A+GSQG+  G Y +  +G+
Sbjct: 96  NIELLTGDGMVPFGLELLAKSDDLTQNNSERILRVIIEITQAMGSQGMALGQYNQFQHGQ 155

Query: 184 SKGEDDEKMVEYVCEKKEGELHXXXXXXXXXXXXXSEEEIEKLRKYGLYVGMIQGMVNGI 363
           S        +++VC+KKEGELH             +EEEIEKLR+YGLYVG++QG+++  
Sbjct: 156 SD------YIDHVCKKKEGELHSCAGAVGAILGGGTEEEIEKLRRYGLYVGLMQGVLSNW 209

Query: 364 GKNKQ 378
            + K+
Sbjct: 210 VERKE 214