BLASTX nr result

ID: Cnidium21_contig00008530 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008530
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531488.1| serine/arginine rich splicing factor, putati...   152   2e-35
gb|ABB29919.1| unknown [Solanum tuberosum]                            152   4e-35
ref|XP_002334472.1| predicted protein [Populus trichocarpa] gi|2...   151   6e-35
ref|XP_002304081.1| predicted protein [Populus trichocarpa] gi|2...   151   6e-35
gb|ABR18047.1| unknown [Picea sitchensis]                             150   1e-34

>ref|XP_002531488.1| serine/arginine rich splicing factor, putative [Ricinus communis]
           gi|223528897|gb|EEF30895.1| serine/arginine rich
           splicing factor, putative [Ricinus communis]
          Length = 257

 Score =  152 bits (385), Expect = 2e-35
 Identities = 79/110 (71%), Positives = 83/110 (75%)
 Frame = +3

Query: 6   MSHFGRAGPPDIKDTYSLLVLNITFRTSADDLFPLFDKYGXXXXXXXXXXXXXXXXXXXX 185
           MSHFGR+GPPDI DTYSLLVLNITFRT+ADDLFPLFDKYG                    
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGK------------------- 41

Query: 186 XXXXXXVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGKVVDGR 335
                 VVD+FIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDG+VVDGR
Sbjct: 42  ------VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGR 85


>gb|ABB29919.1| unknown [Solanum tuberosum]
          Length = 258

 Score =  152 bits (383), Expect = 4e-35
 Identities = 78/110 (70%), Positives = 83/110 (75%)
 Frame = +3

Query: 6   MSHFGRAGPPDIKDTYSLLVLNITFRTSADDLFPLFDKYGXXXXXXXXXXXXXXXXXXXX 185
           MSHFGR+GPPDIKDTYSLLVLN+TFRT+ADDLFPLFDKYG                    
Sbjct: 1   MSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGK------------------- 41

Query: 186 XXXXXXVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGKVVDGR 335
                 VVDVFIPRDRRTGDSRGFAFVRYKY DEAQKAVE+LDG+VVDGR
Sbjct: 42  ------VVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGR 85


>ref|XP_002334472.1| predicted protein [Populus trichocarpa] gi|222872360|gb|EEF09491.1|
           predicted protein [Populus trichocarpa]
          Length = 101

 Score =  151 bits (381), Expect = 6e-35
 Identities = 78/110 (70%), Positives = 83/110 (75%)
 Frame = +3

Query: 6   MSHFGRAGPPDIKDTYSLLVLNITFRTSADDLFPLFDKYGXXXXXXXXXXXXXXXXXXXX 185
           MSHFGR+GPPDI DTYSLLVLNITFRT+ADDLFPLFDKYG                    
Sbjct: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGK------------------- 41

Query: 186 XXXXXXVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGKVVDGR 335
                 VVD+FIPRDRRTG+SRGFAFVRYKYADEAQKAVERLDG+VVDGR
Sbjct: 42  ------VVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVERLDGRVVDGR 85


>ref|XP_002304081.1| predicted protein [Populus trichocarpa] gi|222841513|gb|EEE79060.1|
           predicted protein [Populus trichocarpa]
          Length = 142

 Score =  151 bits (381), Expect = 6e-35
 Identities = 78/110 (70%), Positives = 83/110 (75%)
 Frame = +3

Query: 6   MSHFGRAGPPDIKDTYSLLVLNITFRTSADDLFPLFDKYGXXXXXXXXXXXXXXXXXXXX 185
           MSHFGR+GPPDI DTYSLLVLNITFRT+ADDLFPLFDKYG                    
Sbjct: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGK------------------- 41

Query: 186 XXXXXXVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGKVVDGR 335
                 VVD+FIPRDRRTG+SRGFAFVRYKYADEAQKAVERLDG+VVDGR
Sbjct: 42  ------VVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVERLDGRVVDGR 85


>gb|ABR18047.1| unknown [Picea sitchensis]
          Length = 267

 Score =  150 bits (379), Expect = 1e-34
 Identities = 78/110 (70%), Positives = 82/110 (74%)
 Frame = +3

Query: 6   MSHFGRAGPPDIKDTYSLLVLNITFRTSADDLFPLFDKYGXXXXXXXXXXXXXXXXXXXX 185
           MSHFGR+GPPDI+DTYSLLVLNITFRTSADDLFPLFD+YG                    
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTSADDLFPLFDRYGK------------------- 41

Query: 186 XXXXXXVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGKVVDGR 335
                 VVD+FIPRDRRTGDSRGFAF RYKYADEAQKAVERLDGK VDGR
Sbjct: 42  ------VVDIFIPRDRRTGDSRGFAFFRYKYADEAQKAVERLDGKNVDGR 85


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