BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00008446
         (1135 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149042.1| PREDICTED: RNA and export factor-binding pro...   219   1e-54
ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and expo...   214   4e-53
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   211   2e-52
ref|XP_002531375.1| RNA and export factor binding protein, putat...   206   7e-51
ref|XP_003543506.1| PREDICTED: THO complex subunit 4-A-like [Gly...   205   2e-50

>ref|XP_004149042.1| PREDICTED: RNA and export factor-binding protein 2-like [Cucumis
           sativus]
          Length = 237

 Score =  219 bits (558), Expect = 1e-54
 Identities = 128/238 (53%), Positives = 160/238 (67%), Gaps = 8/238 (3%)
 Frame = +2

Query: 215 LDMSLDDIIKMNNEKQQQ--LSSPPPHFGPTPSRRFFNRTVNRSFPYSHVEAPETKWKHD 388
           LDMSLDDIIK N +       +      GP PSRRF NR +NR+ PYS  +APET W HD
Sbjct: 5   LDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHD 64

Query: 389 MFPQYVAF--SYPPMLSPFYYVETGTKILVSNLDYEVSDDDIKDLFSVVGDVKKISVHYD 562
           MF  + A   S+PP  S    +ETGTK+ VSNLDY VS++DIK+LFS VGDVK+ S++YD
Sbjct: 65  MFVDHGAAYPSHPPRASA---IETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYD 121

Query: 563 KSGRSKGTAEVVYSQWKDAEAAVKRYNNIQLDGKPMEVKIVGMVTATSSVMSPYGSYGLR 742
           KSGRSKGTAE+V+S+  DA AA+KRYNN+QLDGKPM+++IVG    T +V +P  +    
Sbjct: 122 KSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGN 181

Query: 743 DEG--RGSGLIELNQGG--NMHTRGSGLGRRHGEKAYENISAEELDADLDKYRAEAVR 904
             G  RG   +  N+GG       GSG GR HGEK    +SAE+LDADLDKY  EA++
Sbjct: 182 PNGFPRGGRAMGRNRGGGRGRSGSGSGSGRGHGEK----LSAEDLDADLDKYHEEAMQ 235


>ref|XP_004164149.1| PREDICTED: LOW QUALITY PROTEIN: RNA and export factor-binding
           protein 2-like [Cucumis sativus]
          Length = 248

 Score =  214 bits (544), Expect = 4e-53
 Identities = 129/249 (51%), Positives = 159/249 (63%), Gaps = 19/249 (7%)
 Frame = +2

Query: 215 LDMSLDDIIKMNNEKQQQ--LSSPPPHFGPTPSRRFFNRTVNRSFPYSHVEAPETKWKHD 388
           LDMSLDDIIK N +       +      GP PSRRF NR +NR+ PYS  +APET W HD
Sbjct: 5   LDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHD 64

Query: 389 MFPQYVAF--SYPPMLSPFYYVETGTKILVSNLDYEVSDDDIKDLFSVVGDVKKISVHYD 562
           MF  + A   S+PP  S    +ETGTK+ VSNLDY VS++DIK+LFS VGDVK+ S++YD
Sbjct: 65  MFVDHGAAYPSHPPRASA---IETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYD 121

Query: 563 KSGRSKGTAEVVYSQWKDAEAAVKRYNNIQLDGKPMEVKIVGMVTATSSVMSP-YGSYG- 736
           KSGRSKGTAE+ +S+  DA AA+KRYNN+QLDGKPM+++IVG    T +V +P   S+G 
Sbjct: 122 KSGRSKGTAEIXFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGN 181

Query: 737 -------------LRDEGRGSGLIELNQGGNMHTRGSGLGRRHGEKAYENISAEELDADL 877
                         R  GRG G       G     GSG GR HGEK    +SAE+LDADL
Sbjct: 182 PNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGRGHGEK----LSAEDLDADL 237

Query: 878 DKYRAEAVR 904
           DKY  EA++
Sbjct: 238 DKYHEEAMQ 246


>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
           gi|297746115|emb|CBI16171.3| unnamed protein product
           [Vitis vinifera]
          Length = 243

 Score =  211 bits (538), Expect = 2e-52
 Identities = 126/247 (51%), Positives = 162/247 (65%), Gaps = 14/247 (5%)
 Frame = +2

Query: 206 MSN-LDMSLDDIIKMN-------NEKQQQLSSPPPHFGPTPSRRFFNRTVNRSFPYSHVE 361
           MSN LDMSLDD+IK N       N + +   S     GP P+RR  NR  NR  PYS  +
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGS-----GPGPARRLPNRGANRITPYSVSK 55

Query: 362 APETKWKHDMFPQYVAFSYPPMLSPFYYVETGTKILVSNLDYEVSDDDIKDLFSVVGDVK 541
           APET W+HDMF    A +YP        +ETGTK+ +SNLDY VS++DIK+LFS VGD+K
Sbjct: 56  APETTWQHDMFADQAA-AYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLK 114

Query: 542 KISVHYDKSGRSKGTAEVVYSQWKDAEAAVKRYNNIQLDGKPMEVKIVGMVTATSSVMSP 721
           + S+HYD+SGRSKGTAEVV+S+  DA AAVKRYNN+QLDGKPM+++IVG   AT + + P
Sbjct: 115 RYSIHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPP 174

Query: 722 Y--GSYGLRDEGRGSGLIEL-NQG---GNMHTRGSGLGRRHGEKAYENISAEELDADLDK 883
              G++G  + G  S    + +QG   G    RG G GR  G    E +SAE+LDADL+K
Sbjct: 175 VTNGTFGNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEK 234

Query: 884 YRAEAVR 904
           Y +EA++
Sbjct: 235 YHSEAMQ 241


>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223529035|gb|EEF31023.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 247

 Score =  206 bits (525), Expect = 7e-51
 Identities = 122/250 (48%), Positives = 163/250 (65%), Gaps = 17/250 (6%)
 Frame = +2

Query: 209 SNLDMSLDDIIKMN------NEKQQQLSSPPPHFGPTPSRRFFNRTVNRSFPYSHVEAPE 370
           S LDMSLDDIIK N      N + +  SS     GP P+RRF NR  NR+ PY+  +APE
Sbjct: 3   SALDMSLDDIIKSNKKPGSGNSRGRGRSS-----GPGPTRRFNNRGTNRAAPYAAAKAPE 57

Query: 371 TKWKHDMFPQYVAFSYPPML----SPFYYVETGTKILVSNLDYEVSDDDIKDLFSVVGDV 538
           + W+HDMF                S    +ETGTK+ +SNL+Y VS++DIK+LFS VGD+
Sbjct: 58  STWQHDMFTDQGGMGMFQGQGGGGSRASGIETGTKLYISNLEYGVSNEDIKELFSEVGDL 117

Query: 539 KKISVHYDKSGRSKGTAEVVYSQWKDAEAAVKRYNNIQLDGKPMEVKIVGMVTAT-SSVM 715
           K+ S+HYD+SGRSKGTAEVV+S+  DA AAVKRYNN+QLDGKPM+++IVG   AT ++  
Sbjct: 118 KRYSIHYDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAATP 177

Query: 716 SPYGSYGLRD------EGRGSGLIELNQGGNMHTRGSGLGRRHGEKAYENISAEELDADL 877
           +  G++G  +      +GRG G +   +G +   RG G GR  G    E +SAE+LDADL
Sbjct: 178 AANGNFGNSNGAPRGGQGRG-GTMRRPRGASSDGRGFGRGRGRGRGRGEKVSAEDLDADL 236

Query: 878 DKYRAEAVRT 907
           +KY +EA++T
Sbjct: 237 EKYHSEAMQT 246


>ref|XP_003543506.1| PREDICTED: THO complex subunit 4-A-like [Glycine max]
          Length = 243

 Score =  205 bits (521), Expect = 2e-50
 Identities = 128/243 (52%), Positives = 167/243 (68%), Gaps = 13/243 (5%)
 Frame = +2

Query: 215 LDMSLDDIIKMNNEKQQQLSSPPPH---FGPTPSRRFFNRTVNRSFPYSHVEAPETKWKH 385
           LDM+L+DIIK  N K+  L++        GP P+RR  NR  NR+ PY+  +APET WKH
Sbjct: 5   LDMTLEDIIK--NNKKSSLANTRGRGRASGPGPARRLPNRAANRAAPYAAAKAPETAWKH 62

Query: 386 DMFP-QYVAFSYPPMLSPFYYVETGTKILVSNLDYEVSDDDIKDLFSVVGDVKKISVHYD 562
           DM+  Q VA +YP   +    +ETGTK+ +SNLDY VS+DDIK+LF  VGDVK+ +VHYD
Sbjct: 63  DMYANQPVAAAYPGGRASS--IETGTKLYISNLDYGVSNDDIKELFLEVGDVKRHTVHYD 120

Query: 563 KSGRSKGTAEVVYSQWKDAEAAVKRYNNIQLDGKPMEVKIVGMVTAT----SSVMSPYGS 730
           +SGRSKGTAEVV+S+  DA AAVKRYNN+QLDGKPM+V+IVG   AT     +V   +G+
Sbjct: 121 RSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAAPPAVNGTFGN 180

Query: 731 -YGLRDEGRG-SGLIELNQGGNMHTRGS---GLGRRHGEKAYENISAEELDADLDKYRAE 895
             G+   G+G SG +   +GG+   RGS   G GR  G +  E +SAE+LDADL+KY AE
Sbjct: 181 PTGVPRSGQGRSGSLGRPRGGS-RGRGSIQRGRGRGRGGRD-EKVSAEDLDADLEKYHAE 238

Query: 896 AVR 904
           A++
Sbjct: 239 AMQ 241