BLASTX nr result
ID: Cnidium21_contig00008289
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00008289
(1882 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAS80153.1| ACT11D09.9 [Cucumis melo] 365 e-159
ref|NP_178282.2| cleavage and polyadenylation specificity factor... 350 e-139
gb|AAN87883.1| FEG protein [Arabidopsis thaliana] 341 e-137
ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arab... 352 e-133
gb|AAD12712.1| putative cleavage and polyadenylation specifity f... 350 e-131
>gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 365 bits (937), Expect(2) = e-159
Identities = 181/231 (78%), Positives = 201/231 (87%), Gaps = 1/231 (0%)
Frame = -3
Query: 1568 MFYAKVGDTSIVYTGDYNMTPDRHLGAAQIDRLHLDLLISESTYATTIRDSKYARER*FL 1389
MFYAKVGD ++VYTGDYNMTPDRHLGAAQIDR+ LDLLI+ESTYATTIRDSKYARER FL
Sbjct: 194 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 253
Query: 1388 NAVHKCVSNGGKVLIPTFALGRAQ-ELCILLDDYWERMSLKVPIYFSAGLTLQAYMYYKV 1212
AVH C+++GGKVLIPTFALGRAQ ELC+LLDDYWERM+LK PIY SAGLT+QA MYYK+
Sbjct: 254 KAVHNCLASGGKVLIPTFALGRAQQELCVLLDDYWERMNLKFPIYVSAGLTVQANMYYKM 313
Query: 1211 LINWTSQKVKDAYTTRNAFDFKHVCSFERSMINAPGPCVLFATPGMISGGFSLEVFKHWA 1032
LI+WTSQKVK+ YTTRNAFDFK+V F+RSMI+APGPCVLFATPGMIS GFSLEVFK WA
Sbjct: 314 LISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWA 373
Query: 1031 PYEENLITLPGYCVAGTVGHKLMSGKATKXXXXXXXXXXXRCKIHQLSFSP 879
P + NLITLPGYCVAGTVGHKLMSGK TK + +HQL+FSP
Sbjct: 374 PSKLNLITLPGYCVAGTVGHKLMSGKPTK----IDLDKDTQIDVHQLAFSP 420
Score = 224 bits (570), Expect(2) = e-159
Identities = 131/300 (43%), Positives = 179/300 (59%), Gaps = 41/300 (13%)
Frame = -1
Query: 883 APHTDAKGIMDLVKFLSPKHLILVHGEKPRMISLQERIQSELGILTYCPANNETVSVPST 704
+PHTD+KGIMDLVKFLSPKH+ILVHGEKP+M L+ERI SELGI + PANNETVS+ ST
Sbjct: 419 SPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISST 478
Query: 703 HYVKADISDTSRWKAKYPNFKFSKTN------PE-------------------GNSNRGF 599
+KA+ S PNFKF K N P+ N +
Sbjct: 479 LSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKH 538
Query: 598 MATPIDP-----------LRVFDDRVTDGILWLEKSKKAKAVHQDEFLGMLGAEKHELQF 452
+ +D L+V DDRV +GIL +E KK KA+HQDE L +LG ++HE++F
Sbjct: 539 LNRNLDAKFDSSLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRF 598
Query: 451 AYCCQVRIGNLGNARNIEISGDVLPVIDKCS----WLHVLNGKLEIELAEINIQDCGEHI 284
A+C + G+L D + V+D S WL L+ KL EL++ N+Q+ GE++
Sbjct: 599 AHCRPIYFGSL----------DEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYL 648
Query: 283 QVESLSISVCHNNDCPYRTSETSLNKSEALYF-CCTWLAADEQVARNVISMLRKFELSTT 107
QVES+++S+C +CPYRT+ N+S A+ F CC+WL ADE +A +IS+L K +L +T
Sbjct: 649 QVESITLSICSKENCPYRTTNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 708
>ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName:
Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and
polyadenylation specifity factor [Arabidopsis thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation
specificity factor subunit 3-II [Arabidopsis thaliana]
Length = 613
Score = 350 bits (897), Expect(2) = e-139
Identities = 168/230 (73%), Positives = 192/230 (83%)
Frame = -3
Query: 1568 MFYAKVGDTSIVYTGDYNMTPDRHLGAAQIDRLHLDLLISESTYATTIRDSKYARER*FL 1389
M YAK+GD +IVYTGDYNMT DRHLGAA+IDRL LDLLISESTYATTIR SKY RER FL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 1388 NAVHKCVSNGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYFSAGLTLQAYMYYKVL 1209
AVHKCV+ GGK LIP+FALGRAQELC+LLDDYWERM++KVPIYFS+GLT+QA MYYK+L
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 1208 INWTSQKVKDAYTTRNAFDFKHVCSFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAP 1029
I+WTSQ VK+ + T N FDFK+V F+RS+I+APGPCVLFATPGM+ GFSLEVFKHWAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 341
Query: 1028 YEENLITLPGYCVAGTVGHKLMSGKATKXXXXXXXXXXXRCKIHQLSFSP 879
NL+ LPGY VAGTVGHKLM+GK T RCK+HQ++FSP
Sbjct: 342 SPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSP 391
Score = 174 bits (442), Expect(2) = e-139
Identities = 99/252 (39%), Positives = 142/252 (56%)
Frame = -1
Query: 883 APHTDAKGIMDLVKFLSPKHLILVHGEKPRMISLQERIQSELGILTYCPANNETVSVPST 704
+PHTDAKGIMDL KFLSPK+++LVHGEKP M+ L+E+I SEL I + PAN ETVS ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFAST 449
Query: 703 HYVKADISDTSRWKAKYPNFKFSKTNPEGNSNRGFMATPIDPLRVFDDRVTDGILWLEKS 524
Y+KA+ SD PNFKFS + LRV D R DG+L +EKS
Sbjct: 450 TYIKANASDMFLKSCSNPNFKFSNST---------------QLRVTDHRTADGVLVIEKS 494
Query: 523 KKAKAVHQDEFLGMLGAEKHELQFAYCCQVRIGNLGNARNIEISGDVLPVIDKCSWLHVL 344
KKAK VHQDE +L + H + A+CC V++ ++++ + L
Sbjct: 495 KKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDL-------------IKQL 541
Query: 343 NGKLEIELAEINIQDCGEHIQVESLSISVCHNNDCPYRTSETSLNKSEALYFCCTWLAAD 164
+ K+ ++ I + +QV S S+C + C +R+S +S SEA++ CC W AD
Sbjct: 542 SAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSSSS---SEAVFLCCNWSIAD 598
Query: 163 EQVARNVISMLR 128
++ +I+ ++
Sbjct: 599 LELGWEIINAIK 610
>gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 341 bits (875), Expect(2) = e-137
Identities = 165/230 (71%), Positives = 189/230 (82%)
Frame = -3
Query: 1568 MFYAKVGDTSIVYTGDYNMTPDRHLGAAQIDRLHLDLLISESTYATTIRDSKYARER*FL 1389
M YAK+GD +IVYTGDYNMT DRHLGAA+IDRL LDLLISESTYATTIR SKY RER FL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 1388 NAVHKCVSNGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYFSAGLTLQAYMYYKVL 1209
AVHKCV+ GGK LIP+FALGRAQELC+LLDDYWERM++KVPIYFS+GLT+QA MYYK+L
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 1208 INWTSQKVKDAYTTRNAFDFKHVCSFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAP 1029
I+WTSQ VK+ + T N FDFK+V F+RS+I+APGPCVLFA PGM+ G SLEVFKHWAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFAIPGMLCAGLSLEVFKHWAP 341
Query: 1028 YEENLITLPGYCVAGTVGHKLMSGKATKXXXXXXXXXXXRCKIHQLSFSP 879
NL+ L GY VAGTVGHKLM+GK T RCK+HQ++FSP
Sbjct: 342 SPLNLVALLGYSVAGTVGHKLMAGKPTTVDLHNGTKVDVRCKVHQVAFSP 391
Score = 174 bits (442), Expect(2) = e-137
Identities = 99/252 (39%), Positives = 142/252 (56%)
Frame = -1
Query: 883 APHTDAKGIMDLVKFLSPKHLILVHGEKPRMISLQERIQSELGILTYCPANNETVSVPST 704
+PHTDAKGIMDL KFLSPK+++LVHGEKP M+ L+E+I SEL I + PAN ETVS ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFAST 449
Query: 703 HYVKADISDTSRWKAKYPNFKFSKTNPEGNSNRGFMATPIDPLRVFDDRVTDGILWLEKS 524
Y+KA+ SD PNFKFS + LRV D R DG+L +EKS
Sbjct: 450 TYIKANASDMFLKSCSNPNFKFSNST---------------QLRVTDHRTADGVLVIEKS 494
Query: 523 KKAKAVHQDEFLGMLGAEKHELQFAYCCQVRIGNLGNARNIEISGDVLPVIDKCSWLHVL 344
KKAK VHQDE +L + H + A+CC V++ ++++ + L
Sbjct: 495 KKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVKGESEDDDVDL-------------IKQL 541
Query: 343 NGKLEIELAEINIQDCGEHIQVESLSISVCHNNDCPYRTSETSLNKSEALYFCCTWLAAD 164
+ K+ ++ I + +QV S S+C + C +R+S +S SEA++ CC W AD
Sbjct: 542 SAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRSSSSS---SEAVFLCCNWSIAD 598
Query: 163 EQVARNVISMLR 128
++ +I+ ++
Sbjct: 599 LELGWEIINAIK 610
>ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata] gi|297320925|gb|EFH51346.1| hypothetical protein
ARALYDRAFT_322516 [Arabidopsis lyrata subsp. lyrata]
Length = 819
Score = 352 bits (904), Expect(2) = e-133
Identities = 171/230 (74%), Positives = 192/230 (83%)
Frame = -3
Query: 1568 MFYAKVGDTSIVYTGDYNMTPDRHLGAAQIDRLHLDLLISESTYATTIRDSKYARER*FL 1389
M YAKVGD +IVYTGDYNMT DRHLGAA+IDRL LDLLISESTYATTIR SKY RER FL
Sbjct: 162 MVYAKVGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 1388 NAVHKCVSNGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYFSAGLTLQAYMYYKVL 1209
AVHKCV+ GGK LIP+FALGRAQELC+LLDDYWERM++KVPIYFS+GLT+QA MYYK+L
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 1208 INWTSQKVKDAYTTRNAFDFKHVCSFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAP 1029
I+WTSQ VK+ + T N FDFK+V F+RS+I+APGPCVLFATPGM+ GFSLEVFKHWAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 341
Query: 1028 YEENLITLPGYCVAGTVGHKLMSGKATKXXXXXXXXXXXRCKIHQLSFSP 879
NL+ LPGY VAGTVGHKLMSGK T RCKIHQ++FSP
Sbjct: 342 SPLNLVALPGYSVAGTVGHKLMSGKPTTVDLYNGTKVDVRCKIHQVAFSP 391
Score = 150 bits (379), Expect(2) = e-133
Identities = 79/152 (51%), Positives = 98/152 (64%)
Frame = -1
Query: 883 APHTDAKGIMDLVKFLSPKHLILVHGEKPRMISLQERIQSELGILTYCPANNETVSVPST 704
+PHTDAKGIMDL KFLSPK+++LVHGEKP M+ L+++I SEL I + PAN ETVSV ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKDKITSELDIPCFVPANGETVSVAST 449
Query: 703 HYVKADISDTSRWKAKYPNFKFSKTNPEGNSNRGFMATPIDPLRVFDDRVTDGILWLEKS 524
Y+KA+ SD PNFKFS + LRV D R DG+L +EKS
Sbjct: 450 TYIKANASDMFLKSCSSPNFKFSNST---------------QLRVTDQRTADGVLVIEKS 494
Query: 523 KKAKAVHQDEFLGMLGAEKHELQFAYCCQVRI 428
KKAK VHQDE +L + H + AYCC V++
Sbjct: 495 KKAKIVHQDEVSEVLHEKNHVVSLAYCCPVKV 526
>gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 350 bits (897), Expect(2) = e-131
Identities = 168/230 (73%), Positives = 192/230 (83%)
Frame = -3
Query: 1568 MFYAKVGDTSIVYTGDYNMTPDRHLGAAQIDRLHLDLLISESTYATTIRDSKYARER*FL 1389
M YAK+GD +IVYTGDYNMT DRHLGAA+IDRL LDLLISESTYATTIR SKY RER FL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221
Query: 1388 NAVHKCVSNGGKVLIPTFALGRAQELCILLDDYWERMSLKVPIYFSAGLTLQAYMYYKVL 1209
AVHKCV+ GGK LIP+FALGRAQELC+LLDDYWERM++KVPIYFS+GLT+QA MYYK+L
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKML 281
Query: 1208 INWTSQKVKDAYTTRNAFDFKHVCSFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAP 1029
I+WTSQ VK+ + T N FDFK+V F+RS+I+APGPCVLFATPGM+ GFSLEVFKHWAP
Sbjct: 282 ISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 341
Query: 1028 YEENLITLPGYCVAGTVGHKLMSGKATKXXXXXXXXXXXRCKIHQLSFSP 879
NL+ LPGY VAGTVGHKLM+GK T RCK+HQ++FSP
Sbjct: 342 SPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSP 391
Score = 147 bits (372), Expect(2) = e-131
Identities = 78/152 (51%), Positives = 97/152 (63%)
Frame = -1
Query: 883 APHTDAKGIMDLVKFLSPKHLILVHGEKPRMISLQERIQSELGILTYCPANNETVSVPST 704
+PHTDAKGIMDL KFLSPK+++LVHGEKP M+ L+E+I SEL I + PAN ETVS ST
Sbjct: 390 SPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFAST 449
Query: 703 HYVKADISDTSRWKAKYPNFKFSKTNPEGNSNRGFMATPIDPLRVFDDRVTDGILWLEKS 524
Y+KA+ SD PNFKFS + LRV D R DG+L +EKS
Sbjct: 450 TYIKANASDMFLKSCSNPNFKFSNST---------------QLRVTDHRTADGVLVIEKS 494
Query: 523 KKAKAVHQDEFLGMLGAEKHELQFAYCCQVRI 428
KKAK VHQDE +L + H + A+CC V++
Sbjct: 495 KKAKIVHQDEISEVLHEKNHVVSLAHCCPVKV 526